MELO3C027779 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027779
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Glial fibrillary acidic protein-like
Location	chr05: 17488390 .. 17488694 (+)
RNA-Seq Expression	MELO3C027779
Synteny	MELO3C027779

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAATCGCTATTGCTCCTCAATCATTGGATCCCAACAATGTTTTTATAATAAATCATGATGATCAGGAAAAGGACTTGAAATGATTAAGAGAGATGAACCATGTTCTTGCAACAGAGAATGAGGGGTTGAGGGAAGAAGTGAAGCAATGGGTACAACAAGCTACAGCTTCTCAGAGGCAATTGGAAGAAGCAAAACGACATCTTACAAGACAGTTGGAGTTGAAAAGAGTGAGCAAGGTTGCTGTAGAATTTGAAAGTGCATTAGATGAGCAAGCGACATCAACTCAAAAAATCACCGCA

mRNA sequence

ATGGTTGAATCGCTATTGCTCCTCAATCATTGGATCCCAACAATGTTTTTATAATAAATCATGATGATCAGGAAAAGGACTTGAAATGATTAAGAGAGATGAACCATGTTCTTGCAACAGAGAATGAGGGGTTGAGGGAAGAAGTGAAGCAATGGGTACAACAAGCTACAGCTTCTCAGAGGCAATTGGAAGAAGCAAAACGACATCTTACAAGACAGTTGGAGTTGAAAAGAGTGAGCAAGGTTGCTGTAGAATTTGAAAGTGCATTAGATGAGCAAGCGACATCAACTCAAAAAATCACCGCA

Coding sequence (CDS)

ATGAACCATGTTCTTGCAACAGAGAATGAGGGGTTGAGGGAAGAAGTGAAGCAATGGGTACAACAAGCTACAGCTTCTCAGAGGCAATTGGAAGAAGCAAAACGACATCTTACAAGACAGTTGGAGTTGAAAAGAGTGAGCAAGGTTGCTGTAGAATTTGAAAGTGCATTAGATGAGCAAGCGACATCAACTCAAAAAATCACCGCA

Protein sequence

MNHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQATSTQKITA

Homology

[Close]

BLAST of MELO3C027779 vs. NCBI nr
Match: KAA0056207.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 1.0e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MNHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 60
           MNHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ
Sbjct: 79  MNHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 138

Query: 61  ATSTQKITA 70
           ATSTQKITA
Sbjct: 139 ATSTQKITA 147

[Close]

BLAST of MELO3C027779 vs. NCBI nr
Match: KAA0056193.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 2.9e-25
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MNHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 60
           MNHV ATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ
Sbjct: 79  MNHVFATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 138

Query: 61  ATSTQKITA 70
           ATSTQKITA
Sbjct: 139 ATSTQKITA 147

[Close]

BLAST of MELO3C027779 vs. NCBI nr
Match: KAA0056197.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 2.9e-25
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MNHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 60
           MNHVLATENEGLREEVKQWVQQATASQRQLEE KRHLTRQLELKRVSKVAVEFESALDEQ
Sbjct: 79  MNHVLATENEGLREEVKQWVQQATASQRQLEEVKRHLTRQLELKRVSKVAVEFESALDEQ 138

Query: 61  ATSTQKITA 70
           ATSTQKITA
Sbjct: 139 ATSTQKITA 147

[Close]

BLAST of MELO3C027779 vs. NCBI nr
Match: KAA0056688.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 2.9e-25
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MNHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 60
          MNHVLATENEGLREEVKQWVQQAT SQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ
Sbjct: 17 MNHVLATENEGLREEVKQWVQQATTSQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 76

Query: 61 ATSTQKITA 70
          ATSTQKITA
Sbjct: 77 ATSTQKITA 85

[Close]

BLAST of MELO3C027779 vs. NCBI nr
Match: KAA0031860.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 3.8e-25
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MNHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 60
          M+HVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ
Sbjct: 17 MSHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 76

Query: 61 ATSTQKITA 70
          ATSTQKITA
Sbjct: 77 ATSTQKITA 85

[Close]

BLAST of MELO3C027779 vs. ExPASy TrEMBL
Match: A0A5A7UNM5 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold431G00360 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-26
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MNHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 60
           MNHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ
Sbjct: 79  MNHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 138

Query: 61  ATSTQKITA 70
           ATSTQKITA
Sbjct: 139 ATSTQKITA 147

[Close]

BLAST of MELO3C027779 vs. ExPASy TrEMBL
Match: A0A5A7UNL9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73G00160 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MNHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 60
          MNHVLATENEGLREEVKQWVQQAT SQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ
Sbjct: 17 MNHVLATENEGLREEVKQWVQQATTSQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 76

Query: 61 ATSTQKITA 70
          ATSTQKITA
Sbjct: 77 ATSTQKITA 85

[Close]

BLAST of MELO3C027779 vs. ExPASy TrEMBL
Match: A0A5A7UJQ2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold431G00200 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MNHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 60
           MNHV ATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ
Sbjct: 79  MNHVFATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 138

Query: 61  ATSTQKITA 70
           ATSTQKITA
Sbjct: 139 ATSTQKITA 147

[Close]

BLAST of MELO3C027779 vs. ExPASy TrEMBL
Match: A0A5A7UNL4 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold431G00250 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MNHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 60
           MNHVLATENEGLREEVKQWVQQATASQRQLEE KRHLTRQLELKRVSKVAVEFESALDEQ
Sbjct: 79  MNHVLATENEGLREEVKQWVQQATASQRQLEEVKRHLTRQLELKRVSKVAVEFESALDEQ 138

Query: 61  ATSTQKITA 70
           ATSTQKITA
Sbjct: 139 ATSTQKITA 147

[Close]

BLAST of MELO3C027779 vs. ExPASy TrEMBL
Match: A0A5A7SM81 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold480G00070 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MNHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 60
          M+HVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ
Sbjct: 17 MSHVLATENEGLREEVKQWVQQATASQRQLEEAKRHLTRQLELKRVSKVAVEFESALDEQ 76

Query: 61 ATSTQKITA 70
          ATSTQKITA
Sbjct: 77 ATSTQKITA 85

The following BLAST results are available for this feature:

BLAST of MELO3C027779 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056207.1	1.0e-25	100.00	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0056193.1	2.9e-25	98.55	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0056197.1	2.9e-25	98.55	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0056688.1	2.9e-25	98.55	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0031860.1	3.8e-25	98.55	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C027779 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C027779 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UNM5	4.9e-26	100.00	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7UNL9	1.4e-25	98.55	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7UJQ2	1.4e-25	98.55	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7UNL4	1.4e-25	98.55	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SM81	1.8e-25	98.55	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of MELO3C027779 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027779.1	MELO3C027779.1	mRNA