MELO3C027729.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C027729.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCACTA en-spm transposon protein
Locationchr05: 9188741 .. 9189193 (-)
RNA-Seq ExpressionMELO3C027729.jh1
SyntenyMELO3C027729.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCATTATGTCATATTGACGATCAAATTTTATGGAGATGGACGATATGTTCCTACAGTTTAAGGATGATTTAGATAACATTGCGGGAGGGTTGTCATCTGTGGGCGACAATACGGGTGATTCTAAGAATTTTCTTCATTTTAACTTACAAATATTTCATGTAGGGGTTTCTAACTTTATATGTTATTGTCTATTTATTGAGCAGGATCTTCTTCTCAACAAATGACTCCGACTCCTAGGAGACGTGCGCAATCTGGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGACGCATTCTGATGACGATCGCCTCTGGAGCGGAGAAGCCTATTTCTTCACACGTCGTTCGCTTCAGCAGGCGATAGGCGTGTGCGTGCGAAAGACATTTCCCGTCCGCTGTCTTAAGTGGGCGGACGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCAA

mRNA sequence

GTCATTATGTCATATTGACGATCAAATTTTATGGAGATGGACGATATGTTCCTACAGTTTAAGGATGATTTAGATAACATTGCGGGAGGGTTGTCATCTGTGGGCGACAATACGGGATCTTCTTCTCAACAAATGACTCCGACTCCTAGGAGACGTGCGCAATCTGGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGACGCATTCTGATGACGATCGCCTCTGGAGCGGAGAAGCCTATTTCTTCACACGTCGTTCGCTTCAGCAGGCGATAGGCGTGTGCGTGCGAAAGACATTTCCCGTCCGCTGTCTTAAGTGGGCGGACGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCAA

Coding sequence (CDS)

ATGGAGATGGACGATATGTTCCTACAGTTTAAGGATGATTTAGATAACATTGCGGGAGGGTTGTCATCTGTGGGCGACAATACGGGATCTTCTTCTCAACAAATGACTCCGACTCCTAGGAGACGTGCGCAATCTGGACTCTTGGAGTTAGAGCGCCACGTTGCAATAAATGGACGCATTCTGATGACGATCGCCTCTGGAGCGGAGAAGCCTATTTCTTCACACGTCGTTCGCTTCAGCAGGCGATAG

Protein sequence

MEMDDMFLQFKDDLDNIAGGLSSVGDNTGSSSQQMTPTPRRRAQSGLLELERHVAINGRILMTIASGAEKPISSHVVRFSRR
Homology
BLAST of MELO3C027729.jh1 vs. NCBI nr
Match: KAA0059057.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (354), Expect = 1.52e-40
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0

Query: 1  MEMDDMFLQFKDDLDNIAGGLSSVGDNTGSSSQQMTPTPRRRAQSGLLELERHVAINGRI 60
          ME DDMFLQF++DLDNIAGG SSVGDNTGSSSQQMTPTPRRRAQS LLELERHV INGRI
Sbjct: 1  METDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQMTPTPRRRAQSRLLELERHVVINGRI 60

Query: 61 LMTIASGAEKPISSHVVRFSR 81
          LMTIA GAEKPIS HVVRFS+
Sbjct: 61 LMTIAPGAEKPISPHVVRFSQ 81

BLAST of MELO3C027729.jh1 vs. NCBI nr
Match: KAA0040810.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (345), Expect = 7.39e-40
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0

Query: 1  MEMDDMFLQFKDDLDNIAGGLSSVGDNTGSSSQQMTPTPRRRAQSGLLELERHVAINGRI 60
          ME DDMFLQF++DLDNIAGG SSVGDNTGSSSQQ TPTPRRRAQS LLELERHVAINGRI
Sbjct: 1  METDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRI 60

Query: 61 LMTIASGAEKPISSHVVRFSR 81
           MTIA GAEKPIS HVVRFS+
Sbjct: 61 PMTIAPGAEKPISPHVVRFSQ 81

BLAST of MELO3C027729.jh1 vs. NCBI nr
Match: KAA0041798.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK27087.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (332), Expect = 7.07e-38
Identity = 68/81 (83.95%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1  MEMDDMFLQFKDDLDNIAGGLSSVGDNTGSSSQQMTPTPRRRAQSGLLELERHVAINGRI 60
          ME DDMFLQF++DLDNIAGG SSVGDNT SSSQQ TPTPRRRAQS LLELERHVAINGRI
Sbjct: 1  METDDMFLQFEEDLDNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGRI 60

Query: 61 LMTIASGAEKPISSHVVRFSR 81
           MTIA GAEKPIS H +RFS+
Sbjct: 61 PMTIAPGAEKPISPHAIRFSQ 81

BLAST of MELO3C027729.jh1 vs. NCBI nr
Match: KAA0056747.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 2.73e-37
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0

Query: 1  MEMDDMFLQFKDDLDNIAGGLSSVGDNTGSSSQQMTPTPRRRAQSGLLELERHVAINGRI 60
          ME DDMFLQF++DLDNIAGG SSVGDNTGSSSQQ TPTPRRRAQS LLELERHVAINGRI
Sbjct: 1  METDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRI 60

Query: 61 LMTIASGAEKPISSHVVRFSR 81
           MTIA GAEKPIS HVVRFS+
Sbjct: 61 PMTIALGAEKPISPHVVRFSQ 81

BLAST of MELO3C027729.jh1 vs. NCBI nr
Match: KAA0067969.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 3.49e-37
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1  MEMDDMFLQFKDDLDNIAGGLSSVGDNTGSSSQQMTPTPRRRAQSGLLELERHVAINGRI 60
          ME DDMFLQF+DDLDNIAGG SSVGDNTGSSSQQ TPTPRRRAQS LLELERHVAING I
Sbjct: 1  METDDMFLQFEDDLDNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGCI 60

Query: 61 LMTIASGAEKPISSHVVRFSR 81
           MTIA GAEKPIS H VRFS+
Sbjct: 61 SMTIAPGAEKPISPHAVRFSQ 81

BLAST of MELO3C027729.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UWM2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00840 PE=4 SV=1)

HSP 1 Score: 140 bits (354), Expect = 7.36e-41
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0

Query: 1  MEMDDMFLQFKDDLDNIAGGLSSVGDNTGSSSQQMTPTPRRRAQSGLLELERHVAINGRI 60
          ME DDMFLQF++DLDNIAGG SSVGDNTGSSSQQMTPTPRRRAQS LLELERHV INGRI
Sbjct: 1  METDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQMTPTPRRRAQSRLLELERHVVINGRI 60

Query: 61 LMTIASGAEKPISSHVVRFSR 81
          LMTIA GAEKPIS HVVRFS+
Sbjct: 61 LMTIAPGAEKPISPHVVRFSQ 81

BLAST of MELO3C027729.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TBV3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00250 PE=4 SV=1)

HSP 1 Score: 137 bits (345), Expect = 3.58e-40
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0

Query: 1  MEMDDMFLQFKDDLDNIAGGLSSVGDNTGSSSQQMTPTPRRRAQSGLLELERHVAINGRI 60
          ME DDMFLQF++DLDNIAGG SSVGDNTGSSSQQ TPTPRRRAQS LLELERHVAINGRI
Sbjct: 1  METDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRI 60

Query: 61 LMTIASGAEKPISSHVVRFSR 81
           MTIA GAEKPIS HVVRFS+
Sbjct: 61 PMTIAPGAEKPISPHVVRFSQ 81

BLAST of MELO3C027729.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DTK3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00990 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 3.42e-38
Identity = 68/81 (83.95%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1  MEMDDMFLQFKDDLDNIAGGLSSVGDNTGSSSQQMTPTPRRRAQSGLLELERHVAINGRI 60
          ME DDMFLQF++DLDNIAGG SSVGDNT SSSQQ TPTPRRRAQS LLELERHVAINGRI
Sbjct: 1  METDDMFLQFEEDLDNIAGGSSSVGDNTESSSQQTTPTPRRRAQSRLLELERHVAINGRI 60

Query: 61 LMTIASGAEKPISSHVVRFSR 81
           MTIA GAEKPIS H +RFS+
Sbjct: 61 PMTIAPGAEKPISPHAIRFSQ 81

BLAST of MELO3C027729.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UQ38 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00210 PE=4 SV=1)

HSP 1 Score: 137 bits (344), Expect = 1.32e-37
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0

Query: 1  MEMDDMFLQFKDDLDNIAGGLSSVGDNTGSSSQQMTPTPRRRAQSGLLELERHVAINGRI 60
          ME DDMFLQF++DLDNIAGG SSVGDNTGSSSQQ TPTPRRRAQS LLELERHVAINGRI
Sbjct: 1  METDDMFLQFEEDLDNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGRI 60

Query: 61 LMTIASGAEKPISSHVVRFSR 81
           MTIA GAEKPIS HVVRFS+
Sbjct: 61 PMTIALGAEKPISPHVVRFSQ 81

BLAST of MELO3C027729.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VS75 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001550 PE=4 SV=1)

HSP 1 Score: 134 bits (338), Expect = 1.69e-37
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1  MEMDDMFLQFKDDLDNIAGGLSSVGDNTGSSSQQMTPTPRRRAQSGLLELERHVAINGRI 60
          ME DDMFLQF+DDLDNIAGG SSVGDNTGSSSQQ TPTPRRRAQS LLELERHVAING I
Sbjct: 1  METDDMFLQFEDDLDNIAGGSSSVGDNTGSSSQQTTPTPRRRAQSRLLELERHVAINGCI 60

Query: 61 LMTIASGAEKPISSHVVRFSR 81
           MTIA GAEKPIS H VRFS+
Sbjct: 61 SMTIAPGAEKPISPHAVRFSQ 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0059057.11.52e-4088.89CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0040810.17.39e-4087.65CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0041798.17.07e-3883.95CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK27087.1 CACTA en-... [more]
KAA0056747.12.73e-3787.65CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0067969.13.49e-3786.42CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UWM27.36e-4188.89CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7TBV33.58e-4087.65CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3DTK33.42e-3883.95CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7UQ381.32e-3787.65CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7VS751.69e-3786.42CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..41

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027729.jh1.t1MELO3C027729.jh1.t1mRNA