MELO3C027702.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C027702.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr01: 19290124 .. 19290348 (-)
RNA-Seq ExpressionMELO3C027702.jh1
SyntenyMELO3C027702.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAAAGGTTAGTAATCAAAGAACACACCCATTGTAGGAATAGTTGTGATAATTTCTCCGAGCTTGAGCTTGAGCTTGTACAAGATCGTGGTCTTTCCAGCAGCATCAAGACCAACCATCAAAATCTGCATCTCCTTCTTTGCAAAAAGCCTAGTGAAGAGCTTGGTGAAGGTCAATCCCATTTCTCCTTTTCCTTAGCCGACTATTTTCAATTTGTCTAA

mRNA sequence

ATGAAAAAAAGGTTAGTAATCAAAGAACACACCCATTGTAGGAATAGTTGTGATAATTTCTCCGAGCTTGAGCTTGAGCTTGTACAAGATCGTGGTCTTTCCAGCAGCATCAAGACCAACCATCAAAATCTGCATCTCCTTCTTTGCAAAAAGCCTAGTGAAGAGCTTGGTGAAGGTCAATCCCATTTCTCCTTTTCCTTAGCCGACTATTTTCAATTTGTCTAA

Coding sequence (CDS)

ATGAAAAAAAGGTTAGTAATCAAAGAACACACCCATTGTAGGAATAGTTGTGATAATTTCTCCGAGCTTGAGCTTGAGCTTGTACAAGATCGTGGTCTTTCCAGCAGCATCAAGACCAACCATCAAAATCTGCATCTCCTTCTTTGCAAAAAGCCTAGTGAAGAGCTTGGTGAAGGTCAATCCCATTTCTCCTTTTCCTTAGCCGACTATTTTCAATTTGTCTAA

Protein sequence

MKKRLVIKEHTHCRNSCDNFSELELELVQDRGLSSSIKTNHQNLHLLLCKKPSEELGEGQSHFSFSLADYFQFV
Homology
BLAST of MELO3C027702.jh1 vs. NCBI nr
Match: PHT24427.1 (hypothetical protein CQW23_35836 [Capsicum baccatum])

HSP 1 Score: 58.5 bits (140), Expect = 5.71e-09
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 14 RNSCDNFSELELELVQDRGLSSSIKTNHQNLHLLLCKKPSEELGEGQSHFS 64
          RN  D+ SEL+L  VQD  L+S I+T H+N HL L KKP+E+LGE Q HFS
Sbjct: 34 RNGGDDLSELKL--VQDSSLTSCIETYHENSHLFLSKKPAEKLGERQPHFS 82

BLAST of MELO3C027702.jh1 vs. NCBI nr
Match: KAG6554759.1 (hypothetical protein Mapa_003778 [Marchantia paleacea])

HSP 1 Score: 60.1 bits (144), Expect = 1.59e-08
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 11  THCRNSCDNFSELELELVQDRGLSSSIKTNHQNLHLLLCKKPSEELGEGQSHFSFSLAD 69
           T  RN   N S+L+L  VQ+R LSS I+T+HQN HLLL KKP E+LGE + HF   L +
Sbjct: 139 TDRRNGGHNLSQLQL--VQNRRLSSRIQTHHQNSHLLLSKKPLEQLGESEPHFGSELLE 195

BLAST of MELO3C027702.jh1 vs. NCBI nr
Match: GER44985.1 (F-box and associated interaction domains-containing protein, partial [Striga asiatica])

HSP 1 Score: 52.0 bits (123), Expect = 1.73e-05
Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 0

Query: 24 ELELVQDRGLSSSIKTNHQNLHLLLCKKPSEELGEGQSH 62
          +LE+VQ  GL+SSI+TNH++ HL L K+ +E+LGEGQ+H
Sbjct: 8  QLEIVQYGGLTSSIETNHKDSHLFLRKQAAEKLGEGQTH 46

BLAST of MELO3C027702.jh1 vs. NCBI nr
Match: XP_002618501.1 (ADP-ribosylation factor 1 [Clavispora lusitaniae ATCC 42720] >EEQ37837.1 ADP-ribosylation factor 1 [Clavispora lusitaniae ATCC 42720])

HSP 1 Score: 48.9 bits (115), Expect = 1.08e-04
Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 0

Query: 11  THCRNSCDNFSELELELVQDRGLSSSIKTNHQNLHLLLCKKPSEELGEGQSH 62
           T+ RN   N ++L+L  VQD GL+S ++ +HQ+ H L+ KK  ++LGE Q+H
Sbjct: 97  TNSRNGGHNLTKLQL--VQDGGLTSGVQADHQDSHFLVTKKVGKQLGERQTH 146

BLAST of MELO3C027702.jh1 vs. NCBI nr
Match: RUS89062.1 (hypothetical protein EGW08_003173, partial [Elysia chlorotica])

HSP 1 Score: 47.8 bits (112), Expect = 1.40e-04
Identity = 24/54 (44.44%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 5   LVIKEHTHCRNSCDNFSELELELVQDRGLSSSIKTNHQNLHLLLCKKPSEELGE 58
           L  +E T  R+ CD+F++ EL  VQ+   +SSI+T+HQN HL L K+  E++G+
Sbjct: 72  LKSRELTDSRDCCDDFTQFEL--VQNCRFTSSIQTDHQNPHLTLAKEALEQIGK 123

BLAST of MELO3C027702.jh1 vs. ExPASy TrEMBL
Match: A0A1J3CFT5 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR15828_c2_g1_i1_g.48519 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.38e-13
Identity = 34/53 (64.15%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 11 THCRNSCDNFSELELELVQDRGLSSSIKTNHQNLHLLLCKKPSEELGEGQSHF 63
          T+ RN  D+ SELEL  VQD  L+SSIKTNHQ+ HL LCK+P+E+L EGQ HF
Sbjct: 14 TNGRNGSDDLSELEL--VQDGRLTSSIKTNHQDSHLFLCKEPAEQLSEGQPHF 64

BLAST of MELO3C027702.jh1 vs. ExPASy TrEMBL
Match: A0A1J3FG78 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR1283_c6_g1_i1_g.4348 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.78e-12
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 11 THCRNSCDNFSELELELVQDRGLSSSIKTNHQNLHLLLCKKPSEELGEGQSHF 63
          T+ RN  D+ S+LEL  VQD  L+SSIKTNHQ+ HL LCK+P+E+L EGQ HF
Sbjct: 14 TNGRNGSDDLSKLEL--VQDGRLTSSIKTNHQDSHLFLCKEPAEQLSEGQPHF 64

BLAST of MELO3C027702.jh1 vs. ExPASy TrEMBL
Match: A0A1J3IDT2 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR23595_c1_g1_i1_g.68897 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.00e-12
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 11 THCRNSCDNFSELELELVQDRGLSSSIKTNHQNLHLLLCKKPSEELGEGQSHF 63
          T+ RN  D+ S+LEL  VQD  L+SSIKT+HQ+ HL LCK+P+E+L EGQ HF
Sbjct: 14 TNGRNGSDDLSKLEL--VQDGRLTSSIKTHHQDSHLFLCKEPAEQLSEGQPHF 64

BLAST of MELO3C027702.jh1 vs. ExPASy TrEMBL
Match: A0A2G2UUK3 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_35836 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.76e-09
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 14 RNSCDNFSELELELVQDRGLSSSIKTNHQNLHLLLCKKPSEELGEGQSHFS 64
          RN  D+ SEL+L  VQD  L+S I+T H+N HL L KKP+E+LGE Q HFS
Sbjct: 34 RNGGDDLSELKL--VQDSSLTSCIETYHENSHLFLSKKPAEKLGERQPHFS 82

BLAST of MELO3C027702.jh1 vs. ExPASy TrEMBL
Match: A0A1J3CRR4 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR5472_c0_g1_i1_g.17468 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.53e-07
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 0

Query: 24 ELELVQDRGLSSSIKTNHQNLHLLLCKKPSEELGEGQSH 62
          +L+LVQD GL+  IKT+HQN HLLL ++P E+LGE ++H
Sbjct: 61 QLQLVQDGGLTRGIKTDHQNAHLLLGEEPREQLGERETH 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PHT24427.15.71e-0958.82hypothetical protein CQW23_35836 [Capsicum baccatum][more]
KAG6554759.11.59e-0854.24hypothetical protein Mapa_003778 [Marchantia paleacea][more]
GER44985.11.73e-0558.97F-box and associated interaction domains-containing protein, partial [Striga asi... [more]
XP_002618501.11.08e-0444.23ADP-ribosylation factor 1 [Clavispora lusitaniae ATCC 42720] >EEQ37837.1 ADP-rib... [more]
RUS89062.11.40e-0444.44hypothetical protein EGW08_003173, partial [Elysia chlorotica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1J3CFT53.38e-1364.15Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR158... [more]
A0A1J3FG781.78e-1262.26Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR128... [more]
A0A1J3IDT29.00e-1260.38Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR235... [more]
A0A2G2UUK32.76e-0958.82Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_35836 PE=4 SV=1[more]
A0A1J3CRR42.53e-0758.97Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR547... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027702.jh1.t1MELO3C027702.jh1.t1mRNA