MELO3C027699.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C027699.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCMP-sialic acid transporter 4
Locationchr05: 8607619 .. 8608623 (-)
RNA-Seq ExpressionMELO3C027699.jh1
SyntenyMELO3C027699.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAATGAACAAAAAAATCGAATTTGTTGGGCGTTACATTTTCTTTGCAACTTCGATCATGTTCTTCAGACACCTTTTCAAGGTTGACTGATGGCTATATTGAGTTCCCATTCTGTAATGCTTTATGAGAGAAGTGTGGTGTATGTTTTGTGGGAAGAGTGATCCTTAAAGTACTTATTGTATTTATGGTGGTTTGTTTTTGTAGATCATGGCACTCTTGAGTGGATTTGCTGGAGTGTACACTAAGGTGAATTACTTGTGTTCATTTATTACGGTTCTCATGATCCTAAATCATGCCCTAAGGTATTAAACAATTGCACTCTTAGAGTTATTAGCATCAATAGTAGATCTTATCTTAGGCTAACTTTATGGAAATCTTCGTTATTCAATCAATTAAGTCTTGTGGGTTTGTGCGATAGTGTGGAAATATACACTACAAAAATAGCACCAAGTCTATTTTCTTAATTTTTTTTTATAGTTAGAAAAATATGGTGACAACATTTGTTTTTCAGTGGCATTGTTGTATCTATGGTGTTGAAGTATGCGGATAATATTGTGAAGGTATTGCTTATTGCAACTACAAGGCCTTAATTCATTTGATGAATTTATTTGTACCTTTAAGGTCCAACTACTTAAAGTTGTTATATTGCAGTCCTACTACAATCATCATCAAATGTGTATGTGTTGTGTTGTTGAAGTGAATGTGCAGTGTTGTTAGATGCGTAGAGTCATACTCTAAAATTTCTTTTTCTTTTCTTACTAGGTTTTTGCAATAATCCATTGGAGCAGTGAAGCCATATTTGTGAAATTCATTGATGTATAGGTCTTTTTGTAGATTTGGTAGCAAAATTTTGGTTCAAATGTACTTATTTAAATAGGTTGTTCGTATCAAAACATACATGTTCATTGCTTCATTGTACAAACACTTTACCAACAATTGTACAGATATTAGAAAGTGTATGTTAAAGTATATATATTAAAGCGTTCTCCGTTTCTTTCCATA

mRNA sequence

ATGACAATGAACAAAAAAATCGAATTTGTTGGGCGTTACATTTTCTTTGCAACTTCGATCATGTTCTTCAGACACCTTTTCAAGATCATGGCACTCTTGAGTGGATTTGCTGGAGTGTACACTAAGGTGAATTACTTGTGTTCATTTATTACGGTTCTCATGATCCTAAATCATGCCCTAAGTGGCATTGTTGTATCTATGGTGTTGAAGTATGCGGATAATATTGTGAAGGTTTTTGCAATAATCCATTGGAGCAGTGAAGCCATATTTGTGAAATTCATTGATGTATAGGTCTTTTTGTAGATTTGGTAGCAAAATTTTGGTTCAAATGTACTTATTTAAATAGGTTGTTCGTATCAAAACATACATGTTCATTGCTTCATTGTACAAACACTTTACCAACAATTGTACAGATATTAGAAAGTGTATGTTAAAGTATATATATTAAAGCGTTCTCCGTTTCTTTCCATA

Coding sequence (CDS)

ATGACAATGAACAAAAAAATCGAATTTGTTGGGCGTTACATTTTCTTTGCAACTTCGATCATGTTCTTCAGACACCTTTTCAAGATCATGGCACTCTTGAGTGGATTTGCTGGAGTGTACACTAAGGTGAATTACTTGTGTTCATTTATTACGGTTCTCATGATCCTAAATCATGCCCTAAGTGGCATTGTTGTATCTATGGTGTTGAAGTATGCGGATAATATTGTGAAGGTTTTTGCAATAATCCATTGGAGCAGTGAAGCCATATTTGTGAAATTCATTGATGTATAG

Protein sequence

MTMNKKIEFVGRYIFFATSIMFFRHLFKIMALLSGFAGVYTKVNYLCSFITVLMILNHALSGIVVSMVLKYADNIVKVFAIIHWSSEAIFVKFIDV
Homology
[Close]
BLAST of MELO3C027699.jh1 vs. NCBI nr
Match: RLN33371.1 (hypothetical protein C2845_PM03G10930 [Panicum miliaceum])

HSP 1 Score: 69.3 bits (168), Expect = 3.28e-11
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 29  IMALLSGFAGVYTK-----VNYLC----SFITVLMILNHALSGIVVSMVLKYADNIVK 77
           +MALLSGFAGVYT+     +N  C    SFIT+LMILNHALSGI VSMV+KYADNIVK
Sbjct: 664 VMALLSGFAGVYTEDFDAVINKGCFHGYSFITILMILNHALSGIAVSMVMKYADNIVK 721

[Close]
BLAST of MELO3C027699.jh1 vs. NCBI nr
Match: PKU69150.1 (CMP-sialic acid transporter 4 [Dendrobium catenatum])

HSP 1 Score: 66.2 bits (160), Expect = 3.79e-10
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 29  IMALLSGFAGVYTK-----VN----YLCSFITVLMILNHALSGIVVSMVLKYADNIVKVF 80
           +MALLSGFAGVYT+     VN    +  +FITV MILNHALSGI VSMV+K+ADNIVKV+
Sbjct: 332 VMALLSGFAGVYTEDFDAVVNNGFFHGYTFITVCMILNHALSGIAVSMVMKFADNIVKVY 391

[Close]
BLAST of MELO3C027699.jh1 vs. NCBI nr
Match: KAA0048509.1 (CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa] >TYK28300.1 CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 2.96e-09
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 29  IMALLSGFAGVYTKVNYLCSFITVLMILNHALSGI 63
           IM LLSGFAGVYT+VNYLCSFITVLMILNHAL  +
Sbjct: 96  IMTLLSGFAGVYTEVNYLCSFITVLMILNHALRAV 130

[Close]
BLAST of MELO3C027699.jh1 vs. NCBI nr
Match: MQM12132.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 61.6 bits (148), Expect = 1.61e-08
Identity = 39/59 (66.10%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 29  IMALLSGFAGVYTK-----VN----YLCSFITVLMILNHALSGIVVSMVLKYADNIVKV 78
           +MALLSGFAGVYT+     +N    +  S IT LMILNHALSGI VS V+KYADNIVKV
Sbjct: 333 VMALLSGFAGVYTEDFDAVMNKGFFHGYSLITTLMILNHALSGIAVSFVMKYADNIVKV 391

[Close]
BLAST of MELO3C027699.jh1 vs. NCBI nr
Match: XP_002463067.1 (CMP-sialic acid transporter 2 [Sorghum bicolor] >EER99588.1 hypothetical protein SORBI_3002G349000 [Sorghum bicolor] >KAG0545493.1 hypothetical protein BDA96_02G366100 [Sorghum bicolor])

HSP 1 Score: 59.7 bits (143), Expect = 7.16e-08
Identity = 44/94 (46.81%), Postives = 51/94 (54.26%), Query Frame = 0 

Query: 29  IMALLSGFAGVYTKV-------------NY-------------LC--------------- 80
           +MALLSGFAGVYT+V             N+             +C               
Sbjct: 215 VMALLSGFAGVYTEVIIKKRPSRNINAQNFWLYIFGMLFNLVAICVQDFDAVMNKGFFHG 274

[Close]
BLAST of MELO3C027699.jh1 vs. ExPASy Swiss-Prot
Match: B8B7Q4 (CMP-sialic acid transporter 2 OS=Oryza sativa subsp. indica OX=39946 GN=CSTLP2 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.1e-08
Identity = 43/94 (45.74%), Postives = 50/94 (53.19%), Query Frame = 0 

Query: 29  IMALLSGFAGVYTKV-------------NY-------------LC--------------- 81
           +MALLSGFAGVYT+              N+             +C               
Sbjct: 216 VMALLSGFAGVYTEAIIKKRPSRNINVQNFWLYIFGMLFNLVAICVQDFDAVMNKGFFHG 275

[Close]
BLAST of MELO3C027699.jh1 vs. ExPASy Swiss-Prot
Match: Q6ZL17 (CMP-sialic acid transporter 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CSTLP2 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.1e-08
Identity = 43/94 (45.74%), Postives = 50/94 (53.19%), Query Frame = 0 

Query: 29  IMALLSGFAGVYTKV-------------NY-------------LC--------------- 81
           +MALLSGFAGVYT+              N+             +C               
Sbjct: 216 VMALLSGFAGVYTEAIIKKRPSRNINVQNFWLYIFGMLFNLVAICVQDFDAVMNKGFFHG 275

[Close]
BLAST of MELO3C027699.jh1 vs. ExPASy Swiss-Prot
Match: F4JN00 (CMP-sialic acid transporter 4 OS=Arabidopsis thaliana OX=3702 GN=At4g35335 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-07
Identity = 41/94 (43.62%), Postives = 48/94 (51.06%), Query Frame = 0 

Query: 29  IMALLSGFAGVYTKV-------------NYLC---------------------------- 81
           +MALLSGFAGVYT+              N+                              
Sbjct: 215 VMALLSGFAGVYTEAIIKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHG 274

[Close]
BLAST of MELO3C027699.jh1 vs. ExPASy TrEMBL
Match: A0A3L6T531 (Putative_PNPOx domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM03G10930 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.59e-11
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 29  IMALLSGFAGVYTK-----VNYLC----SFITVLMILNHALSGIVVSMVLKYADNIVK 77
           +MALLSGFAGVYT+     +N  C    SFIT+LMILNHALSGI VSMV+KYADNIVK
Sbjct: 664 VMALLSGFAGVYTEDFDAVINKGCFHGYSFITILMILNHALSGIAVSMVMKYADNIVK 721

[Close]
BLAST of MELO3C027699.jh1 vs. ExPASy TrEMBL
Match: A0A2I0W0G7 (CMP-sialic acid transporter 4 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca002420 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.84e-10
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 29  IMALLSGFAGVYTK-----VN----YLCSFITVLMILNHALSGIVVSMVLKYADNIVKVF 80
           +MALLSGFAGVYT+     VN    +  +FITV MILNHALSGI VSMV+K+ADNIVKV+
Sbjct: 332 VMALLSGFAGVYTEDFDAVVNNGFFHGYTFITVCMILNHALSGIAVSMVMKFADNIVKVY 391

[Close]
BLAST of MELO3C027699.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U4Z1 (CMP-sialic acid transporter 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001190 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.43e-09
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 29  IMALLSGFAGVYTKVNYLCSFITVLMILNHALSGI 63
           IM LLSGFAGVYT+VNYLCSFITVLMILNHAL  +
Sbjct: 96  IMTLLSGFAGVYTEVNYLCSFITVLMILNHALRAV 130

[Close]
BLAST of MELO3C027699.jh1 vs. ExPASy TrEMBL
Match: C5XCC2 (Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=SORBI_3002G349000 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.47e-08
Identity = 44/94 (46.81%), Postives = 51/94 (54.26%), Query Frame = 0 

Query: 29  IMALLSGFAGVYTKV-------------NY-------------LC--------------- 80
           +MALLSGFAGVYT+V             N+             +C               
Sbjct: 215 VMALLSGFAGVYTEVIIKKRPSRNINAQNFWLYIFGMLFNLVAICVQDFDAVMNKGFFHG 274

[Close]
BLAST of MELO3C027699.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UF52 (50S ribosomal protein L1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00090 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.87e-08
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 29  IMALLSGFAGVYTKVNYLCSFITVLMILNHAL 60
           IMA LSGFAGVYTKVNYLCSFIT+LMILNH L
Sbjct: 165 IMAPLSGFAGVYTKVNYLCSFITILMILNHVL 196

[Close]
BLAST of MELO3C027699.jh1 vs. TAIR 10
Match: AT4G35335.1 (Nucleotide-sugar transporter family protein )

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-08
Identity = 41/94 (43.62%), Postives = 48/94 (51.06%), Query Frame = 0 

Query: 29  IMALLSGFAGVYTKV-------------NYLC---------------------------- 81
           +MALLSGFAGVYT+              N+                              
Sbjct: 215 VMALLSGFAGVYTEAIIKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHG 274

The following BLAST results are available for this feature:
BLAST of MELO3C027699.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
RLN33371.13.28e-1170.69hypothetical protein C2845_PM03G10930 [Panicum miliaceum][more]
PKU69150.13.79e-1067.21CMP-sialic acid transporter 4 [Dendrobium catenatum][more]
KAA0048509.12.96e-0985.71CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa] >TYK28300.1 ... [more]
MQM12132.11.61e-0866.10hypothetical protein [Colocasia esculenta][more]
XP_002463067.17.16e-0846.81CMP-sialic acid transporter 2 [Sorghum bicolor] >EER99588.1 hypothetical protein... [more]
BLAST of MELO3C027699.jh1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B8B7Q46.1e-0845.74CMP-sialic acid transporter 2 OS=Oryza sativa subsp. indica OX=39946 GN=CSTLP2 P... [more]
Q6ZL176.1e-0845.74CMP-sialic acid transporter 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CSTLP2... [more]
F4JN003.0e-0743.62CMP-sialic acid transporter 4 OS=Arabidopsis thaliana OX=3702 GN=At4g35335 PE=2 ... [more]
BLAST of MELO3C027699.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3L6T5311.59e-1170.69Putative_PNPOx domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_P... [more]
A0A2I0W0G71.84e-1067.21CMP-sialic acid transporter 4 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca00242... [more]
A0A5A7U4Z11.43e-0985.71CMP-sialic acid transporter 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
C5XCC23.47e-0846.81Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=SORBI_3002G349000 PE=3 SV=... [more]
A0A5A7UF523.87e-0890.6350S ribosomal protein L1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
BLAST of MELO3C027699.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G35335.12.2e-0843.62Nucleotide-sugar transporter family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10231:SF71CMP-SIALIC ACID TRANSPORTER 4coord: 48..80
IPR007271Nucleotide-sugar transporterPANTHERPTHR10231NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTERcoord: 48..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027699.jh1.t1MELO3C027699.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090481 pyrimidine nucleotide-sugar transmembrane transport
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity