MELO3C027682 (gene) Melon (DHL92) v4

Overview
NameMELO3C027682
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionDNA-directed RNA polymerase subunit beta''
Locationchr07: 5172309 .. 5172879 (+)
RNA-Seq ExpressionMELO3C027682
SyntenyMELO3C027682
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTACCTAATCCTCTGGTATCTCACTCAGCTAAGTAATTATATGACACCGGTATGAATTTTGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTAACTCAAACCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATA

mRNA sequence

TTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTACCTAATCCTCTGGTATCTCACTCAGCTAAGTAATTATATGACACCGGTATGAATTTTGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTAACTCAAACCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAATA

Coding sequence (CDS)

ATGAATTTTGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTAACTCAAACCTATTGTCGAACCCCACTCAGCGTAATATGGAGGTACTTATGGCGGAACGGGCCGATCTGGTCTTTCACAATAAAGTGATAGATGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGATCACTTCGGAATGGCATATACATCACACATCCTGGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGGTATGCTACAAGTGAA

Protein sequence

MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE
Homology
[Close]
BLAST of MELO3C027682 vs. NCBI nr
Match: YP_010131084.1 (RNA polymerase beta'' subunit [Benincasa hispida] >QPZ75731.1 RNA polymerase beta'' subunit [Benincasa hispida])

HSP 1 Score: 302.8 bits (774), Expect = 1.8e-78
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
           M FVLSGSTRTIGPEFLRESRSRKGSFLII+SNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1   MKFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
           DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
           AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE
Sbjct: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 155

[Close]
BLAST of MELO3C027682 vs. NCBI nr
Match: YP_009525176.1 (RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94570.1 RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94656.1 RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94740.1 RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94825.1 RNA polymerase beta subunit [Hodgsonia macrocarpa])

HSP 1 Score: 301.6 bits (771), Expect = 3.9e-78
Identity = 152/155 (98.06%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
           MNFVLSGSTRTIGPEFLRESRSRKGSF II+SNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFPIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
           DGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61  DGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
           AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE
Sbjct: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 155

[Close]
BLAST of MELO3C027682 vs. NCBI nr
Match: QJS52311.1 (RNA polymerase beta'' subunit [Indofevillea khasiana])

HSP 1 Score: 300.8 bits (769), Expect = 6.7e-78
Identity = 151/155 (97.42%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
           MNFVLSGSTRTIGPEFLRESRSRKGSF +I+SNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFPLIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
           DGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61  DGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
           AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE
Sbjct: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 155

[Close]
BLAST of MELO3C027682 vs. NCBI nr
Match: QWQ50133.1 (RNA polymerase beta'' subunit [Cyclanthera pedata])

HSP 1 Score: 299.7 bits (766), Expect = 1.5e-77
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
           MNFVLSGSTRT+GPEFLRESRSRKGSF II+SNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1   MNFVLSGSTRTVGPEFLRESRSRKGSFPIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
           DGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61  DGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
           AEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSE
Sbjct: 121 AEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSE 155

[Close]
BLAST of MELO3C027682 vs. NCBI nr
Match: KAF8376852.1 (hypothetical protein HHK36_031436 [Tetracentron sinense])

HSP 1 Score: 271.6 bits (693), Expect = 4.3e-69
Identity = 138/154 (89.61%), Postives = 143/154 (92.86%), Query Frame = 0 

Query: 2   NFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVID 61
           N  LSGSTR I PEFLR+SRSRKGS  I +SN LSNPTQRNMEVLMAERADLVFHNK ID
Sbjct: 308 NSGLSGSTRIIVPEFLRKSRSRKGSLRITDSNPLSNPTQRNMEVLMAERADLVFHNKAID 367

Query: 62  GTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDA 121
           GTA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATS+SLGIDDLLTIPSKGWLVQDA
Sbjct: 368 GTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSLSLGIDDLLTIPSKGWLVQDA 427

Query: 122 EQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
           EQQS ILEKHHHY NVHAVEKLRQSIEIWYATSE
Sbjct: 428 EQQSSILEKHHHYANVHAVEKLRQSIEIWYATSE 461

[Close]
BLAST of MELO3C027682 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.1e-58
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 43  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
           MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 60

Query: 103 LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 113

[Close]
BLAST of MELO3C027682 vs. ExPASy Swiss-Prot
Match: Q06H07 (DNA-directed RNA polymerase subunit beta'' OS=Drimys granadensis OX=224735 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-57
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 43  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
           MEVLMAERADLVFHNKVIDGTA+KRLISRLIDHFGMAYTSHILDQ+KT+GFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTMGFQQATATSIS 60

Query: 103 LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 113

[Close]
BLAST of MELO3C027682 vs. ExPASy Swiss-Prot
Match: Q9THV5 (DNA-directed RNA polymerase subunit beta'' OS=Sinapis alba OX=3728 GN=rpoC2 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.8e-57
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 43  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
           MEVLMAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSIS
Sbjct: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60

Query: 103 LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 113

[Close]
BLAST of MELO3C027682 vs. ExPASy Swiss-Prot
Match: Q09G56 (DNA-directed RNA polymerase subunit beta'' OS=Platanus occidentalis OX=4403 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.0e-57
Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 43  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
           MEVLMAERADLVFHNK IDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60

Query: 103 LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 113

[Close]
BLAST of MELO3C027682 vs. ExPASy Swiss-Prot
Match: Q0G9M9 (DNA-directed RNA polymerase subunit beta'' OS=Liriodendron tulipifera OX=3415 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.2e-57
Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 43  MEVLMAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSIS 102
           MEVLMAERADLVFHNKVID TA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSIS
Sbjct: 1   MEVLMAERADLVFHNKVIDATAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS 60

Query: 103 LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
           LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE
Sbjct: 61  LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 113

[Close]
BLAST of MELO3C027682 vs. ExPASy TrEMBL
Match: A0A7T3QNJ7 (RNA polymerase beta'' subunit OS=Benincasa hispida OX=102211 GN=rpoC2 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.5e-79
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
           M FVLSGSTRTIGPEFLRESRSRKGSFLII+SNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1   MKFVLSGSTRTIGPEFLRESRSRKGSFLIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
           DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
           AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE
Sbjct: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 155

[Close]
BLAST of MELO3C027682 vs. ExPASy TrEMBL
Match: A0A346QNZ0 (DNA-directed RNA polymerase subunit beta'' OS=Hodgsonia macrocarpa OX=2184935 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 152/155 (98.06%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
           MNFVLSGSTRTIGPEFLRESRSRKGSF II+SNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFPIIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
           DGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61  DGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
           AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE
Sbjct: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 155

[Close]
BLAST of MELO3C027682 vs. ExPASy TrEMBL
Match: A0A6M4SPN7 (DNA-directed RNA polymerase subunit beta'' OS=Indofevillea khasiana OX=383665 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.2e-78
Identity = 151/155 (97.42%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVI 60
           MNFVLSGSTRTIGPEFLRESRSRKGSF +I+SNLLSNPTQRNMEVLMAERADLVFHNKVI
Sbjct: 1   MNFVLSGSTRTIGPEFLRESRSRKGSFPLIDSNLLSNPTQRNMEVLMAERADLVFHNKVI 60

Query: 61  DGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120
           DGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQD
Sbjct: 61  DGTAIKRLISRLIDHFGMAYTSHILDQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQD 120

Query: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
           AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE
Sbjct: 121 AEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 155

[Close]
BLAST of MELO3C027682 vs. ExPASy TrEMBL
Match: A0A7J7M9Q4 (DNA-directed RNA polymerase subunit OS=Kingdonia uniflora OX=39325 GN=GIB67_012980 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.1e-69
Identity = 138/153 (90.20%), Postives = 141/153 (92.16%), Query Frame = 0 

Query: 3   FVLSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVIDG 62
           FVL  ST  I PEFL ESRSRKGS  I +SNLLSNPT RNMEVLMAERADLVFHNK IDG
Sbjct: 303 FVLYDSTNFIIPEFLHESRSRKGSLRITDSNLLSNPTHRNMEVLMAERADLVFHNKAIDG 362

Query: 63  TAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAE 122
           TA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGIDDLLTIPSKGWLVQDAE
Sbjct: 363 TAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAE 422

Query: 123 QQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
           QQS ILEKHHHYGNVHAVEKLRQSIEIWYATSE
Sbjct: 423 QQSFILEKHHHYGNVHAVEKLRQSIEIWYATSE 455

[Close]
BLAST of MELO3C027682 vs. ExPASy TrEMBL
Match: A0A4D6NNC8 (Multifunctional fusion protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g731 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.1e-69
Identity = 138/151 (91.39%), Postives = 143/151 (94.70%), Query Frame = 0 

Query: 5    LSGSTRTIGPEFLRESRSRKGSFLIINSNLLSNPTQRNMEVLMAERADLVFHNKVIDGTA 64
            + GS RTI PEFL ESRSRKGSF II+SN LSNPTQRN EVLMAERA+LVFHNKVIDGTA
Sbjct: 1707 IQGSPRTIVPEFLCESRSRKGSFPIIDSNPLSNPTQRNREVLMAERANLVFHNKVIDGTA 1766

Query: 65   IKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQ 124
            IKRLISRLIDHFGMAYTSHILDQ+KTLGF+QATATSISLGIDDLLTIPSKGWLVQDAEQQ
Sbjct: 1767 IKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGIDDLLTIPSKGWLVQDAEQQ 1826

Query: 125  SLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
            S ILEKHHHYGNVHAVEKLRQSIEIWYATSE
Sbjct: 1827 SFILEKHHHYGNVHAVEKLRQSIEIWYATSE 1857

[Close]
BLAST of MELO3C027682 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 214.2 bits (544), Expect = 7.6e-56
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 0 

Query: 47  MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 106
           MAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1   MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60

Query: 107 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSE 156
           DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSE
Sbjct: 61  DLLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSE 109

The following BLAST results are available for this feature:
BLAST of MELO3C027682 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_010131084.11.8e-7898.71RNA polymerase beta'' subunit [Benincasa hispida] >QPZ75731.1 RNA polymerase bet... [more]
YP_009525176.13.9e-7898.06RNA polymerase beta subunit [Hodgsonia macrocarpa] >AXR94570.1 RNA polymerase be... [more]
QJS52311.16.7e-7897.42RNA polymerase beta'' subunit [Indofevillea khasiana][more]
QWQ50133.11.5e-7796.77RNA polymerase beta'' subunit [Cyclanthera pedata][more]
KAF8376852.14.3e-6989.61hypothetical protein HHK36_031436 [Tetracentron sinense][more]
BLAST of MELO3C027682 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZP32.1e-58100.00DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P... [more]
Q06H071.8e-5797.35DNA-directed RNA polymerase subunit beta'' OS=Drimys granadensis OX=224735 GN=rp... [more]
Q9THV51.8e-5798.23DNA-directed RNA polymerase subunit beta'' OS=Sinapis alba OX=3728 GN=rpoC2 PE=1... [more]
Q09G563.0e-5797.35DNA-directed RNA polymerase subunit beta'' OS=Platanus occidentalis OX=4403 GN=r... [more]
Q0G9M95.2e-5797.35DNA-directed RNA polymerase subunit beta'' OS=Liriodendron tulipifera OX=3415 GN... [more]
BLAST of MELO3C027682 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7T3QNJ78.5e-7998.71RNA polymerase beta'' subunit OS=Benincasa hispida OX=102211 GN=rpoC2 PE=4 SV=1[more]
A0A346QNZ01.9e-7898.06DNA-directed RNA polymerase subunit beta'' OS=Hodgsonia macrocarpa OX=2184935 GN... [more]
A0A6M4SPN73.2e-7897.42DNA-directed RNA polymerase subunit beta'' OS=Indofevillea khasiana OX=383665 GN... [more]
A0A7J7M9Q42.1e-6990.20DNA-directed RNA polymerase subunit OS=Kingdonia uniflora OX=39325 GN=GIB67_0129... [more]
A0A4D6NNC82.1e-6991.39Multifunctional fusion protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g731 PE... [more]
BLAST of MELO3C027682 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00170.17.6e-5697.25DNA-directed RNA polymerase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042102RNA polymerase Rpb1, domain 3 superfamilyGENE3D1.10.274.100RNA polymerase Rpb1, domain 3coord: 28..107
e-value: 1.5E-12
score: 49.9
IPR007066RNA polymerase Rpb1, domain 3PFAMPF04983RNA_pol_Rpb1_3coord: 42..108
e-value: 3.7E-7
score: 30.2
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 47..151
NoneNo IPR availablePANTHERPTHR19376:SF47DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''coord: 47..151
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 22..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027682.1MELO3C027682.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity