MELO3C027619 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027619
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	F-box/LRR-repeat protein 10
Location	chr01: 15368105 .. 15368974 (+)
RNA-Seq Expression	MELO3C027619
Synteny	MELO3C027619

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGATTGTTTGGTTTAGATAAACCCTAGCTTTTAATTGGGGCTCCGGAAGCGAAAGATTTACAGTTGCGCCCAAAATGTACAAGTATAGAATAGTTATATATTTTGAATATTGGTTTTATCTATATATTCCTGAATTAAGAGATACGGAAAAAATACATATGAATAATATTTTTAAAAATAATATTTTCTAAAAGTAATATATTTTCAAAAAACAATATTTTTTTAACCATGATATTTTTAAAAAATAATTATGGTAACCAAACCTACCTTTTAAATATTTTAGGTTTGTCTTCTGCTATTTTTTTTTATCTAACTACCTTCTTTACCCTTCTCTTCTTCTTTTATTTGATAATTTTTTCTTTTTTTAACGATAAAATTAAGAAGTTCAAATAGCGGGAAATACGAAAAAACAAACCTAAAAAATAATTGCAACGTTGTTATGACACATTTTTTATATTTTAGACTTATTCAAATATTTGGTGGTTTGTTTTATCGAAAAGATCCATTTATTTATTTATATTTATTTCGGTCTTGTAATATTTAAACAGAGAAAGAAGGGGTCGGGTCGGAGGTTGAATTTGGATGAGGATGCAAAGATGGTCGTCGTGAACAGTACATTCCCATATAACCAGATCCATCTTTCATCGAATCAAAGTTGAAGAAACTTGATTTGAAACTGTACCGACAAAATATGGCGGACGGAGATGGCAGCGTCAAAAGCCTCGATCTCCTGCCTTCTGCTGTCCTTGCTACAATCATGACTAAACTCGATTTGCCTTCCATCTGCTCCCTTGCCTCCACATGCAGGATCTTCCATTCTTGTGCTTCCCAAATTCTCAATTTTCTCCCCACTTTTCATCTCCTTGTAA

mRNA sequence

GGGATTGTTTGGTTTAGATAAACCCTAGCTTTTAATTGGGGCTCCGGAAGCGAAAGATTTACAGTTGCGCCCAAAATAGAAAGAAGGGGTCGGGTCGGAGGTTGAATTTGGATGAGGATGCAAAGATGGTCGTCGTGAACAGTACATTCCCATATAACCAGATCCATCTTTCATCGAATCAAAGTTGAAGAAACTTGATTTGAAACTGTACCGACAAAATATGGCGGACGGAGATGGCAGCGTCAAAAGCCTCGATCTCCTGCCTTCTGCTGTCCTTGCTACAATCATGACTAAACTCGATTTGCCTTCCATCTGCTCCCTTGCCTCCACATGCAGGATCTTCCATTCTTGTGCTTCCCAAATTCTCAATTTTCTCCCCACTTTTCATCTCCTTGTAA

Coding sequence (CDS)

ATGGCGGACGGAGATGGCAGCGTCAAAAGCCTCGATCTCCTGCCTTCTGCTGTCCTTGCTACAATCATGACTAAACTCGATTTGCCTTCCATCTGCTCCCTTGCCTCCACATGCAGGATCTTCCATTCTTGTGCTTCCCAAATTCTCAATTTTCTCCCCACTTTTCATCTCCTTGTA

Protein sequence

MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLLV

Homology

[Close]

BLAST of MELO3C027619 vs. NCBI nr
Match: XP_008465541.1 (PREDICTED: F-box/LRR-repeat protein 10-like isoform X1 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 3.4e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL 59
          MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL
Sbjct: 1  MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL 58

[Close]

BLAST of MELO3C027619 vs. NCBI nr
Match: KAA0040326.1 (F-box/LRR-repeat protein 10 isoform X2 [Cucumis melo var. makuwa] >TYK23379.1 F-box/LRR-repeat protein 10 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 3.4e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL 59
          MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL
Sbjct: 1  MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL 58

[Close]

BLAST of MELO3C027619 vs. NCBI nr
Match: XP_004144867.1 (F-box/LRR-repeat protein 10 isoform X1 [Cucumis sativus] >KGN43284.1 hypothetical protein Csa_020307 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-20
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL 59
          MADGDGSV+SLDLLPSAVLATIMT LDLPSICSLASTCR FHSCASQILNFLPTFHLL
Sbjct: 1  MADGDGSVESLDLLPSAVLATIMTNLDLPSICSLASTCRTFHSCASQILNFLPTFHLL 58

[Close]

BLAST of MELO3C027619 vs. NCBI nr
Match: XP_038888116.1 (F-box/LRR-repeat protein 10 isoform X1 [Benincasa hispida])

HSP 1 Score: 108.2 bits (269), Expect = 2.4e-20
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL 59
          MADGDGSV+SLDLLPSAVLATIMTKLDLPSICS+ASTCR FHSCASQILNFLP+FHLL
Sbjct: 1  MADGDGSVESLDLLPSAVLATIMTKLDLPSICSVASTCRTFHSCASQILNFLPSFHLL 58

[Close]

BLAST of MELO3C027619 vs. NCBI nr
Match: KAG6589027.1 (F-box/LRR-repeat protein 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.8 bits (242), Expect = 3.3e-17
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL 59
          MAD +GSV+SLD LPSAVLATIMTKLDLPSICS+ASTC  FHSCASQ+LNFLP FHLL
Sbjct: 26 MADENGSVESLDRLPSAVLATIMTKLDLPSICSIASTCTTFHSCASQLLNFLPNFHLL 83

[Close]

BLAST of MELO3C027619 vs. ExPASy Swiss-Prot
Match: Q9SDA8 (F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana OX=3702 GN=FBL10 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.2e-11
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 3  DGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHL 58
          +G    +SLDLLP+A+L TIMTKLD+ S+CSLASTC+   SC +++L F P FH+
Sbjct: 15 EGCDGERSLDLLPAALLETIMTKLDVASLCSLASTCKTLKSCVTRVLTFTPNFHI 69

[Close]

BLAST of MELO3C027619 vs. ExPASy TrEMBL
Match: A0A5A7TE11 (F-box/LRR-repeat protein 10 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004450 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL 59
          MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL
Sbjct: 1  MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL 58

[Close]

BLAST of MELO3C027619 vs. ExPASy TrEMBL
Match: A0A1S3CP38 (F-box/LRR-repeat protein 10-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503169 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL 59
          MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL
Sbjct: 1  MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL 58

[Close]

BLAST of MELO3C027619 vs. ExPASy TrEMBL
Match: A0A0A0K2N0 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G017670 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.9e-21
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL 59
          MADGDGSV+SLDLLPSAVLATIMT LDLPSICSLASTCR FHSCASQILNFLPTFHLL
Sbjct: 1  MADGDGSVESLDLLPSAVLATIMTNLDLPSICSLASTCRTFHSCASQILNFLPTFHLL 58

[Close]

BLAST of MELO3C027619 vs. ExPASy TrEMBL
Match: A0A6J1EQT5 (F-box/LRR-repeat protein 10 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435048 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-17
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL 59
          MAD +GSV+SLD LPSAVLATIMTKLDLPSICS+ASTC  FHSCASQ+LNFLP FHLL
Sbjct: 1  MADENGSVESLDRLPSAVLATIMTKLDLPSICSIASTCTTFHSCASQLLNFLPNFHLL 58

[Close]

BLAST of MELO3C027619 vs. ExPASy TrEMBL
Match: A0A6J1JQ15 (F-box/LRR-repeat protein 10 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486436 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.8e-17
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MADGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHLL 59
          MAD +GSV+SLD LPSAVLATIMTKLDLPSICS+ASTC  FHSCASQ+ NFLP+FHLL
Sbjct: 1  MADENGSVESLDRLPSAVLATIMTKLDLPSICSIASTCTTFHSCASQLHNFLPSFHLL 58

[Close]

BLAST of MELO3C027619 vs. TAIR 10
Match: AT2G17020.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 4.4e-12
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 3  DGDGSVKSLDLLPSAVLATIMTKLDLPSICSLASTCRIFHSCASQILNFLPTFHL 58
          +G    +SLDLLP+A+L TIMTKLD+ S+CSLASTC+   SC +++L F P FH+
Sbjct: 15 EGCDGERSLDLLPAALLETIMTKLDVASLCSLASTCKTLKSCVTRVLTFTPNFHI 69

The following BLAST results are available for this feature:

BLAST of MELO3C027619 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465541.1	3.4e-22	100.00	PREDICTED: F-box/LRR-repeat protein 10-like isoform X1 [Cucumis melo]	[more]
KAA0040326.1	3.4e-22	100.00	F-box/LRR-repeat protein 10 isoform X2 [Cucumis melo var. makuwa] >TYK23379.1 F-...	[more]
XP_004144867.1	1.4e-20	94.83	F-box/LRR-repeat protein 10 isoform X1 [Cucumis sativus] >KGN43284.1 hypothetica...	[more]
XP_038888116.1	2.4e-20	93.10	F-box/LRR-repeat protein 10 isoform X1 [Benincasa hispida]	[more]
KAG6589027.1	3.3e-17	84.48	F-box/LRR-repeat protein 10, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MELO3C027619 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SDA8	6.2e-11	56.36	F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana OX=3702 GN=FBL10 PE=2 SV=1	[more]

BLAST of MELO3C027619 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TE11	1.6e-22	100.00	F-box/LRR-repeat protein 10 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3CP38	1.6e-22	100.00	F-box/LRR-repeat protein 10-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503...	[more]
A0A0A0K2N0	6.9e-21	94.83	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G017670 PE=4 ...	[more]
A0A6J1EQT5	1.6e-17	84.48	F-box/LRR-repeat protein 10 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1JQ15	7.8e-17	82.76	F-box/LRR-repeat protein 10 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114864...	[more]

BLAST of MELO3C027619 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17020.1	4.4e-12	56.36	F-box/RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 10..46 e-value: 3.3E-7 score: 30.0
None	No IPR available	GENE3D	1.20.1280.50		coord: 7..50 e-value: 3.1E-5 score: 25.8
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 8..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027619.1	MELO3C027619.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding