MELO3C027618 (gene) Melon (DHL92) v4

Overview
NameMELO3C027618
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTranscriptional corepressor LEUNIG_HOMOLOG-like isoform X2
Locationchr04: 6369495 .. 6370281 (-)
RNA-Seq ExpressionMELO3C027618
SyntenyMELO3C027618
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTATCTTCAGCAGCCGTCCATTATAACCCACGCAAATGATCCACTGCCAGCCACCATAAACGCGATGGGTTTCAGACGACATCTCCAGACGCGACGGGCTTCGTCAGACGGCATCTCGAGACGACGGTCTTCGTCAGACGGCATCTCCACATGCAACGGGCTTCAGACGGCGACCTCGACGGGCTTTGGATTGTGAACCACGGTCTTCCGACGACGGCCCACGGACTTCTGACGGCGACCCACGGCCTTCCGATGGCGACCCACTGTAGTCCGACCACTCCCACACTAACTCCGACCCATGGTAAGATCAGAACATATATATCATTCTCATTAATAATATCAATAAGCCTCAAATTGTAAGAGGTTTTCTTCTATTTGGACTCCTTTTTAACTAGAGTACATGCTAATATTTGTTGTTTGTATTGAAGAACAAAAGTGACTAAATAATGGTTCTCGCCCAACCTAATTTTTAACTTGTATTAAATAAGAAAAGAACAAGGATTCAGTTTTTTGTTAGAAGAGGGAAGGATAATTCTATGTACTCTGTTTTACAAACCCGCCGCTGCACCTAATGAAAGTTATAGAAGTAGTAGTGAAGAAAAAGAAATTGCTTAAACATCACCCACTACGTATACTTTTCTTTATTTTCAAGCTGTTTGTAATTTTCTTTTTTAATAATGTATAGATTCCAATTGCATCTTTGTTGAATTATCATACACCATAGAATCTGAAGAAGAAGGAAGTTCTGGAGCTGAGGAGTTCTGGCTTTTTTTCCAGGTTAATTC

mRNA sequence

CTCTATCTTCAGCAGCCGTCCATTATAACCCACGCAAATGATCCACTGCCAGCCACCATAAACGCGATGGGTTTCAGACGACATCTCCAGACGCGACGGGCTTCGTCAGACGGCATCTCGAGACGACGGTCTTCGTCAGACGGCATCTCCACATGCAACGGGCTTCAGACGGCGACCTCGACGGGCTTTGGATTGTGAACCACGGTCTTCCGACGACGGCCCACGGACTTCTGACGGCGACCCACGGCCTTCCGATGGCGACCCACTGTAGTCCGACCACTCCCACACTAACTCCGACCCATGATTCCAATTGCATCTTTGTTGAATTATCATACACCATAGAATCTGAAGAAGAAGGAAGTTCTGGAGCTGAGGAGTTCTGGCTTTTTTTCCAGGTTAATTC

Coding sequence (CDS)

ATGCAACGGGCTTCAGACGGCGACCTCGACGGGCTTTGGATTGTGAACCACGGTCTTCCGACGACGGCCCACGGACTTCTGACGGCGACCCACGGCCTTCCGATGGCGACCCACTGTAGTCCGACCACTCCCACACTAACTCCGACCCATGATTCCAATTGCATCTTTGTTGAATTATCATACACCATAGAATCTGAAGAAGAAGGAAGTTCTGGAGCTGAGGAGTTCTGGCTTTTTTTCCAGGTTAAT

Protein sequence

MQRASDGDLDGLWIVNHGLPTTAHGLLTATHGLPMATHCSPTTPTLTPTHDSNCIFVELSYTIESEEEGSSGAEEFWLFFQVN
Homology
[Close]
BLAST of MELO3C027618 vs. NCBI nr
Match: TYK01301.1 (hypothetical protein E5676_scaffold827G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 3.0e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQRASDGDLDGLWIVNHGLPTTAHGLLTATHGLPMATHCSPTTPTLTPTHDSNCIFVELS 60
          MQRASDGDLDGLWIVNHGLPTTAHGLLTATHGLPMATHCSPTTPTLTPTHDSNCIFVELS
Sbjct: 1  MQRASDGDLDGLWIVNHGLPTTAHGLLTATHGLPMATHCSPTTPTLTPTHDSNCIFVELS 60

Query: 61 YTIESEEEGSSGAEEFWLFFQV 83
          YTIESEEEGSSGAEEFWLFFQV
Sbjct: 61 YTIESEEEGSSGAEEFWLFFQV 82

[Close]
BLAST of MELO3C027618 vs. NCBI nr
Match: KAA0051724.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 3.0e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQRASDGDLDGLWIVNHGLPTTAHGLLTATHGLPMATHCSPTTPTLTPTHDSNCIFVELS 60
          MQRASDGDLDGLWIVNHGLPTTAHGLLTATHGLPMATHCSPTTPTLTPTHDSNCIFVELS
Sbjct: 1  MQRASDGDLDGLWIVNHGLPTTAHGLLTATHGLPMATHCSPTTPTLTPTHDSNCIFVELS 60

Query: 61 YTIESEEEGSSGAEEFWLFFQV 83
          YTIESEEEGSSGAEEFWLFFQV
Sbjct: 61 YTIESEEEGSSGAEEFWLFFQV 82

[Close]
BLAST of MELO3C027618 vs. NCBI nr
Match: KAA0042275.1 (transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 49  THDSNCIFVELSYTIESEEEGSSGAEEFWLFFQ 82
           T D NCIFVELSYTIESEEEGSSGAEEFWLFFQ
Sbjct: 191 TQDFNCIFVELSYTIESEEEGSSGAEEFWLFFQ 223

[Close]
BLAST of MELO3C027618 vs. ExPASy TrEMBL
Match: A0A5A7U8R8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001100 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.4e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQRASDGDLDGLWIVNHGLPTTAHGLLTATHGLPMATHCSPTTPTLTPTHDSNCIFVELS 60
          MQRASDGDLDGLWIVNHGLPTTAHGLLTATHGLPMATHCSPTTPTLTPTHDSNCIFVELS
Sbjct: 1  MQRASDGDLDGLWIVNHGLPTTAHGLLTATHGLPMATHCSPTTPTLTPTHDSNCIFVELS 60

Query: 61 YTIESEEEGSSGAEEFWLFFQV 83
          YTIESEEEGSSGAEEFWLFFQV
Sbjct: 61 YTIESEEEGSSGAEEFWLFFQV 82

[Close]
BLAST of MELO3C027618 vs. ExPASy TrEMBL
Match: A0A5D3BNC8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold827G00010 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.4e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MQRASDGDLDGLWIVNHGLPTTAHGLLTATHGLPMATHCSPTTPTLTPTHDSNCIFVELS 60
          MQRASDGDLDGLWIVNHGLPTTAHGLLTATHGLPMATHCSPTTPTLTPTHDSNCIFVELS
Sbjct: 1  MQRASDGDLDGLWIVNHGLPTTAHGLLTATHGLPMATHCSPTTPTLTPTHDSNCIFVELS 60

Query: 61 YTIESEEEGSSGAEEFWLFFQV 83
          YTIESEEEGSSGAEEFWLFFQV
Sbjct: 61 YTIESEEEGSSGAEEFWLFFQV 82

[Close]
BLAST of MELO3C027618 vs. ExPASy TrEMBL
Match: A0A5A7TLF6 (Transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00590 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.5e-08
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 49  THDSNCIFVELSYTIESEEEGSSGAEEFWLFFQ 82
           T D NCIFVELSYTIESEEEGSSGAEEFWLFFQ
Sbjct: 191 TQDFNCIFVELSYTIESEEEGSSGAEEFWLFFQ 223

The following BLAST results are available for this feature:
BLAST of MELO3C027618 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK01301.13.0e-40100.00hypothetical protein E5676_scaffold827G00010 [Cucumis melo var. makuwa][more]
KAA0051724.13.0e-40100.00ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0042275.11.1e-0793.94transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Cucumis melo var. ma... [more]
BLAST of MELO3C027618 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C027618 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U8R81.4e-40100.00Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60... [more]
A0A5D3BNC81.4e-40100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TLF65.5e-0893.94Transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 OS=Cucumis melo var. ... [more]
BLAST of MELO3C027618 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027618.1MELO3C027618.1mRNA