MELO3C027613 (gene) Melon (DHL92) v4

Overview
NameMELO3C027613
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRibulose bisphosphate carboxylase large chain
Locationchr07: 5408975 .. 5409230 (-)
RNA-Seq ExpressionMELO3C027613
SyntenyMELO3C027613
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTGATTTTACCAAAGATGATGAAAACGTGAATTCCCAACCATTTATGCGTTGGAGAGACCGTTTCCTATTTTGTGCGGAAGCTATTTTTAAATCACAGGCTGAAACAGGTGAAATCAAAGGACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAGGGCTATATTTGCCCGAGAATTGGGAGTTCCTATCGTAATGCATGACTACTTAACAGGTGGATTCACTGCAAATACTAGCTTGGCT

mRNA sequence

ACTTGATTTTACCAAAGATGATGAAAACGTGAATTCCCAACCATTTATGCGTTGGAGAGACCGTTTCCTATTTTGTGCGGAAGCTATTTTTAAATCACAGGCTGAAACAGGTGAAATCAAAGGACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAGGGCTATATTTGCCCGAGAATTGGGAGTTCCTATCGTAATGCATGACTACTTAACAGGTGGATTCACTGCAAATACTAGCTTGGCT

Coding sequence (CDS)

ATGCGTTGGAGAGACCGTTTCCTATTTTGTGCGGAAGCTATTTTTAAATCACAGGCTGAAACAGGTGAAATCAAAGGACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAGGGCTATATTTGCCCGAGAATTGGGAGTTCCTATCGTAATGCATGACTACTTAACAGGTGGATTCACTGCAAATACTAGCTTGGCT

Protein sequence

MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLTGGFTANTSLA
Homology
BLAST of MELO3C027613 vs. NCBI nr
Match: AAR98686.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Leontodon hispidus] >AKG25202.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Leontodon hispidus])

HSP 1 Score: 148.7 bits (374), Expect = 1.9e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT
Sbjct: 205 MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 264

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 265 GGFTANTSLA 274

BLAST of MELO3C027613 vs. NCBI nr
Match: AIN40872.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Pterocypsela elata])

HSP 1 Score: 148.7 bits (374), Expect = 1.9e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT
Sbjct: 190 MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 249

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 250 GGFTANTSLA 259

BLAST of MELO3C027613 vs. NCBI nr
Match: AUZ97425.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Cucumis melo subsp. agrestis])

HSP 1 Score: 148.7 bits (374), Expect = 1.9e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT
Sbjct: 194 MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 253

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 254 GGFTANTSLA 263

BLAST of MELO3C027613 vs. NCBI nr
Match: YP_009447654.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Vitis cordifolia] >BBB35984.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Vitis cordifolia])

HSP 1 Score: 148.7 bits (374), Expect = 1.9e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT
Sbjct: 212 MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 271

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 272 GGFTANTSLA 281

BLAST of MELO3C027613 vs. NCBI nr
Match: AUZ97422.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Cucumis melo subsp. meloides] >AUZ97423.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Cucumis melo subsp. meloides] >AUZ97424.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Cucumis melo subsp. melo])

HSP 1 Score: 148.7 bits (374), Expect = 1.9e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT
Sbjct: 194 MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 253

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 254 GGFTANTSLA 263

BLAST of MELO3C027613 vs. ExPASy Swiss-Prot
Match: Q31669 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthospermum herbaceum OX=43444 GN=rbcL PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT
Sbjct: 203 MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 262

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 263 GGFTANTSLA 272

BLAST of MELO3C027613 vs. ExPASy Swiss-Prot
Match: P48693 (Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus OX=13427 GN=rbcL PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT
Sbjct: 212 MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 271

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 272 GGFTANTSLA 281

BLAST of MELO3C027613 vs. ExPASy Swiss-Prot
Match: P48706 (Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa OX=4236 GN=rbcL PE=3 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT
Sbjct: 212 MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 271

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 272 GGFTANTSLA 281

BLAST of MELO3C027613 vs. ExPASy Swiss-Prot
Match: P28460 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Vitis aestivalis OX=3605 GN=rbcL PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT
Sbjct: 203 MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 262

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 263 GGFTANTSLA 272

BLAST of MELO3C027613 vs. ExPASy Swiss-Prot
Match: Q49KZ0 (Ribulose bisphosphate carboxylase large chain OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rbcL PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 3.3e-35
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRA+FARELGVPIVMHDYLT
Sbjct: 212 MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPIVMHDYLT 271

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 272 GGFTANTSLA 281

BLAST of MELO3C027613 vs. ExPASy TrEMBL
Match: A0A4P9D485 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthospermum emirnense OX=2583253 GN=rbcL PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.3e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT
Sbjct: 201 MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 260

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 261 GGFTANTSLA 270

BLAST of MELO3C027613 vs. ExPASy TrEMBL
Match: A0A481P8J9 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Ixeridium dentatum OX=190260 GN=rbcL PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.3e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT
Sbjct: 101 MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 160

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 161 GGFTANTSLA 170

BLAST of MELO3C027613 vs. ExPASy TrEMBL
Match: A0A4P9D2E0 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthospermum rigidum OX=2583265 GN=rbcL PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.3e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT
Sbjct: 201 MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 260

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 261 GGFTANTSLA 270

BLAST of MELO3C027613 vs. ExPASy TrEMBL
Match: A0A3S7DW51 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cucumis melo subsp. melo OX=412675 GN=rbcL PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.3e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT
Sbjct: 194 MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 253

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 254 GGFTANTSLA 263

BLAST of MELO3C027613 vs. ExPASy TrEMBL
Match: A0A096X8I7 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Dasiphora fruticosa OX=32239 GN=rbcL PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.3e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT
Sbjct: 166 MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 225

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 226 GGFTANTSLA 235

BLAST of MELO3C027613 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 144.4 bits (363), Expect = 3.4e-35
Identity = 66/70 (94.29%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEAI+KSQAETGEIKGHYLNATAGTCEEM+KRA+FARELGVPIVMHDYLT
Sbjct: 212 MRWRDRFLFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLT 271

Query: 61  GGFTANTSLA 71
           GGFTANTSL+
Sbjct: 272 GGFTANTSLS 281

BLAST of MELO3C027613 vs. TAIR 10
Match: AT2G07732.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-33
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEA++K+QAETG IKGHYLNAT GTCEEM+KRA+FARELGVPIVMHDYLT
Sbjct: 44  MRWRDRFLFCAEAVYKAQAETGGIKGHYLNATPGTCEEMIKRAVFARELGVPIVMHDYLT 103

Query: 61  GGFTANTSLA 71
           GGFTANTSLA
Sbjct: 104 GGFTANTSLA 113

BLAST of MELO3C027613 vs. TAIR 10
Match: ATMG00280.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 121.3 bits (303), Expect = 3.0e-28
Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1   MRWRDRFLFCAEAIFKSQAETGEIKGHYLNATAGTCEEMMKRAIFARELGVPIVMHDYLT 60
           MRWRDRFLFCAEA++K+QAETG IKGHYLNATAGTCEEM+KRA+FARELGVPIVMHDYL 
Sbjct: 44  MRWRDRFLFCAEAVYKAQAETGGIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLN 103

Query: 61  GG 63
            G
Sbjct: 104 RG 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AAR98686.11.9e-32100.00ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Leontodo... [more]
AIN40872.11.9e-32100.00ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Pterocyp... [more]
AUZ97425.11.9e-32100.00ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Cucumis ... [more]
YP_009447654.11.9e-32100.00ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Vitis cordifolia]... [more]
AUZ97422.11.9e-32100.00ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Cucumis ... [more]
Match NameE-valueIdentityDescription
Q316692.5e-35100.00Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthospermum herbace... [more]
P486932.5e-35100.00Ribulose bisphosphate carboxylase large chain OS=Cichorium intybus OX=13427 GN=r... [more]
P487062.5e-35100.00Ribulose bisphosphate carboxylase large chain OS=Lactuca sativa OX=4236 GN=rbcL ... [more]
P284602.5e-35100.00Ribulose bisphosphate carboxylase large chain (Fragment) OS=Vitis aestivalis OX=... [more]
Q49KZ03.3e-3598.57Ribulose bisphosphate carboxylase large chain OS=Eucalyptus globulus subsp. glob... [more]
Match NameE-valueIdentityDescription
A0A4P9D4859.3e-33100.00Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthospermum emirnen... [more]
A0A481P8J99.3e-33100.00Ribulose bisphosphate carboxylase large chain (Fragment) OS=Ixeridium dentatum O... [more]
A0A4P9D2E09.3e-33100.00Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anthospermum rigidum... [more]
A0A3S7DW519.3e-33100.00Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cucumis melo subsp. ... [more]
A0A096X8I79.3e-33100.00Ribulose bisphosphate carboxylase large chain (Fragment) OS=Dasiphora fruticosa ... [more]
Match NameE-valueIdentityDescription
ATCG00490.13.4e-3594.29ribulose-bisphosphate carboxylases [more]
AT2G07732.11.1e-3390.00Ribulose bisphosphate carboxylase large chain, catalytic domain [more]
ATMG00280.13.0e-2887.10Ribulose bisphosphate carboxylase large chain, catalytic domain [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyGENE3D3.20.20.110coord: 1..70
e-value: 1.8E-24
score: 88.2
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilySUPERFAMILY51649RuBisCo, C-terminal domaincoord: 1..70
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalPFAMPF00016RuBisCO_largecoord: 1..69
e-value: 8.7E-21
score: 74.4
NoneNo IPR availablePANTHERPTHR47910RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN, CATALYTIC DOMAIN-CONTAINING PROTEINcoord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027613.1MELO3C027613.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0000287 magnesium ion binding