MELO3C027603 (gene) Melon (DHL92) v4

Overview
NameMELO3C027603
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase domain-containing protein
Locationchr05: 17269646 .. 17271898 (+)
RNA-Seq ExpressionMELO3C027603
SyntenyMELO3C027603
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACGTTGGAGCAAATTCGGATATTTATTTGGTGCTTTTTGATGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGGTCCCTGGTTTTTCTTGTATTTCAGAGTGTATCGGTGGAATTAAAATCTCTATTTTGTATGGTTGGAAAGCTTATTCAATTTACTACAACTTTCATAAAGAAATTGTAAACCAAAAACGACTAAAAATTAGTTAAATTGTAGGGACAAGTTAAAGAGGTCATGTGCGCGCGATTCTGGAAGTGTTTCTGTTTTGAGGGTTATATGTGTTTATGCACGGGGAATCAGATTTATATGTCTTCAGGTAAGTTTTATAGGATCTCAAAATGAAGATTTTGATAAAGAATACTCATTTTGTTTAAGTATTGAGAAAGTTATAGTCCTTTGAAGTTTATGTTAGAAATCTGGAAATTTTAGAGAATTGTTGAAATAGGATTTTATTTCTTAAGCTTTGTTTTCATGAGCGTCATCTTTGGTGCGACATGTTATGTATATCTTTAGGAAACCAGAATGTTTAGAGTTTTAATACTCGGTTGGGTTGTTGGCAGGCCGAGAAGAATTAAACCGAGCTTATAGACCAAGGATCTAGCCCAAGACTGTGAGTGACAAAACCAACTTTGAAATATTTTCCATAATTGTTATTATGATTGAATGCGATAAATGTTTATTTACGAAGCCATTAAAGGTATTTGAATTTCATGACTATTTTCAAGTATACATTTGGAGACTAGATTTCTTAAAGAAATTTATGCTAGCACGTAGATATTAAATGTTTGGAAAGTATTTAAACAACAATATTTTAAGCAAAGCATGAATTAGTATGAAGTTTTGTTTTAAGAACTACAATTTTCCACGAAAGAGCTGAGTAGAGTTCGAGCTTTGTGTAAAATTATAAGCAGGCATGTTTTAATATTTTAAGATGAGTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGTGCACACTGGTTAGATTCCGTTGTTGACGTTGAGTGTACTCCGTAACAACGATGCTGTCGTGAGTGCTGGGCAGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCTACTACATCGTAGTGCTTGTAAACGTTGTTGTACTAGGTGTACCCTACACAACGTAGATTCGTCATGTTAGTTAAAATGCTTCGATATACTTGATATGCCTTGCTAGATTTCAATGATGAACATGCTGAGTATTTAAGGAAGCTATTCTTACTACTACGCATTTACATTTACGACTTGTATAAACAGATTTATATGTGTAAAGTTTTCACGTGCTCTTATCTTTAAATTCATAGTTTTAAACTGAGTCACTCACTGAGCTTCATAGCTCACCCTTTCCAAAATGTTTTACCCATTTTCCAGAAATTGATCGACTTCCCGGTGCCTGATAGACGTCCTTAGTCTGCAGAAGCTTCATTATCGATTGCCAGTACGTGTTTTGAGTTGGCCATAAAGTCTGTTGTGTTGTGATGTATATACACCCTTGTATGTTATAGATACTCAAAAGTTTGTATAAGCTTTAGGAGCTATAGTTGTGTAAATTTTGTTGGTTATATTTTGATTAAGGTGTCTTTAGGTTTACTCGTGAAATCGGTAAATTTTGAGGTACACTTCATGTATGTGTTTGACTAGCCTAGGATCCGCTGTGTTTTGTGGCATGTACAATAGTTTATATACTAGATTGGCAAGTTCATCACATGAAAGTTTTAAGCAGAGTCGACAGATACAGGTACAGAAAAGCATTATTCGTCGGCTTCACGCCATCTTTCGATCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGACACTCCACTTCGGGTCACGGTGAGTCTTCGGTAAGGATCATTTTGATAATTTACCCAATGTTGCTATAACCATTTCGAGTTTGAATATTGGAGTAAGACTGGGTCCTATCTTTCGTTCCTTGAAGGTGATAGGGGTTTGACGCTCAAGTTCACGGTCCCACGGCAAGTTCATTTGGGAATAGCTCCCTTTACTCGGGTAAGCCGATGTTGTCGTTTCGAATGATTTAAAAAGGTGACTTATACTGGTGTCATCGTTTAAACCCTTGTGTTTTCGTTTAGGTGGATCTGTTGAGCGTGGACTCGATCGAGGGGCATAACCAAGTATCAGGTAAGGGTTTTCCTACTACTGGACCTCGGATCGAGGCTGGAAACGTAGTAATCCA

mRNA sequence

ATGAAGAACGTTGGAGCAAATTCGGATATTTATTTGGTGCTTTTTGATGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGGTCCCTGGTTTTTCTTGGACAAGTTAAAGAGGTCATGTGCGCGCGATTCTGGAAGTGTTTCTGTTTTGAGGGTTATATGTGTTTATGCACGGGGAATCAGATTTATATGTCTTCAGAGTCGACAGATACAGGTACAGAAAAGCATTATTCGTCGGCTTCACGCCATCTTTCGATCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGACACTCCACTTCGGGTCACGGTGAGTCTTCGATATTGGAGTAAGACTGGGTCCTATCTTTCGTTCCTTGAAGGTGATAGGGGTTTGACGCTCAAGTTCACGGTCCCACGGCAAGTTCATTTGGGAATAGCTCCCTTTACTCGGGTGGATCTGTTGAGCGTGGACTCGATCGAGGGGCATAACCAAGTATCAGGTAAGGGTTTTCCTACTACTGGACCTCGGATCGAGGCTGGAAACGTAGTAATCCA

Coding sequence (CDS)

ATGAAGAACGTTGGAGCAAATTCGGATATTTATTTGGTGCTTTTTGATGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGGTCCCTGGTTTTTCTTGGACAAGTTAAAGAGGTCATGTGCGCGCGATTCTGGAAGTGTTTCTGTTTTGAGGGTTATATGTGTTTATGCACGGGGAATCAGATTTATATGTCTTCAGAGTCGACAGATACAGGTACAGAAAAGCATTATTCGTCGGCTTCACGCCATCTTTCGATCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGACACTCCACTTCGGGTCACGGTGA

Protein sequence

MKNVGANSDIYLVLFDEENRAVGFHSKSGGPWFFLDKLKRSCARDSGSVSVLRVICVYARGIRFICLQSRQIQVQKSIIRRLHAIFRSKVAGSPGGGVTLHFGSR
Homology
[Close]
BLAST of MELO3C027603 vs. NCBI nr
Match: KAA0042134.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 9.0e-18
Identity = 56/92 (60.87%), Postives = 62/92 (67.39%), Query Frame = 0 

Query: 36  DKLKRSCARDSGSVSVLRVICVYARGIRFICLQ-----------------------SRQI 95
           DKLKRSCA DSGS SVLRVICVYARGIRFICLQ                       S  +
Sbjct: 34  DKLKRSCAHDSGSGSVLRVICVYARGIRFICLQIPLLTLSVLRNNDAVVSLGFLVKSVNL 93

Query: 96  QVQKSIIRRLHAIFRSKVAGSPGGGVTLHFGS 105
           +VQKS++R+LHAIFRSKVAGSPGGGVT  + S
Sbjct: 94  EVQKSVVRQLHAIFRSKVAGSPGGGVTTWYQS 125

[Close]
BLAST of MELO3C027603 vs. NCBI nr
Match: KAA0035073.1 (uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 3.9e-13
Identity = 60/140 (42.86%), Postives = 68/140 (48.57%), Query Frame = 0 

Query: 7   NSDIYLVLFDEENRAVGFHSKS---GGPWFFL-DKLKRSCARDSGSVSVLRVICVYARGI 66
           + D + ++F       GF   S   GG    + +KLKRSCARDSGS SVLRVICVYARGI
Sbjct: 62  SEDKWQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGI 121

Query: 67  RFICLQ--------------------------------------------------SRQI 93
           RFICLQ                                                  SRQI
Sbjct: 122 RFICLQIPLLTLSVLRNNDAVVEIDFPVPVDCLSLRKLHYRLPVSLGLLVKSVNFESRQI 181

[Close]
BLAST of MELO3C027603 vs. NCBI nr
Match: KAA0056684.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 9.6e-12
Identity = 52/112 (46.43%), Postives = 56/112 (50.00%), Query Frame = 0 

Query: 36  DKLKRSCARDSGSVSVLRVICVYARGIRFICL---------------------------- 93
           +KLKRSCARDSGS SVLRVICVYARGIRFICL                            
Sbjct: 137 NKLKRSCARDSGSGSVLRVICVYARGIRFICLQISLLTLSVLRNNDAVVEIDFPVPDRLP 196

[Close]
BLAST of MELO3C027603 vs. NCBI nr
Match: KAA0056677.1 (hypothetical protein E6C27_scaffold73G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-10
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 68  QSRQIQVQKSIIRRLHAIFRSKVAGSPGGGVTLHFGSR 106
           QSRQIQVQKS++RRLHAIFRSKVAGSPGGGVTLHFGSR
Sbjct: 19  QSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVTLHFGSR 56

[Close]
BLAST of MELO3C027603 vs. NCBI nr
Match: KAA0056192.1 (hypothetical protein E6C27_scaffold431G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 9.0e-10
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 68  QSRQIQVQKSIIRRLHAIFRSKVAGSPGGGVTLHFGSR 106
           QSRQIQVQK+++RR HAIFRSKVAGSPGGGVTLHFGSR
Sbjct: 19  QSRQIQVQKNVVRRFHAIFRSKVAGSPGGGVTLHFGSR 56

[Close]
BLAST of MELO3C027603 vs. ExPASy TrEMBL
Match: A0A5A7TFC5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006220 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.3e-18
Identity = 56/92 (60.87%), Postives = 62/92 (67.39%), Query Frame = 0 

Query: 36  DKLKRSCARDSGSVSVLRVICVYARGIRFICLQ-----------------------SRQI 95
           DKLKRSCA DSGS SVLRVICVYARGIRFICLQ                       S  +
Sbjct: 34  DKLKRSCAHDSGSGSVLRVICVYARGIRFICLQIPLLTLSVLRNNDAVVSLGFLVKSVNL 93

Query: 96  QVQKSIIRRLHAIFRSKVAGSPGGGVTLHFGS 105
           +VQKS++R+LHAIFRSKVAGSPGGGVT  + S
Sbjct: 94  EVQKSVVRQLHAIFRSKVAGSPGGGVTTWYQS 125

[Close]
BLAST of MELO3C027603 vs. ExPASy TrEMBL
Match: A0A5A7SX02 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G001380 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.9e-13
Identity = 60/140 (42.86%), Postives = 68/140 (48.57%), Query Frame = 0 

Query: 7   NSDIYLVLFDEENRAVGFHSKS---GGPWFFL-DKLKRSCARDSGSVSVLRVICVYARGI 66
           + D + ++F       GF   S   GG    + +KLKRSCARDSGS SVLRVICVYARGI
Sbjct: 62  SEDKWQLVFTRNQEVSGFSCISECIGGVRISIWNKLKRSCARDSGSGSVLRVICVYARGI 121

Query: 67  RFICLQ--------------------------------------------------SRQI 93
           RFICLQ                                                  SRQI
Sbjct: 122 RFICLQIPLLTLSVLRNNDAVVEIDFPVPVDCLSLRKLHYRLPVSLGLLVKSVNFESRQI 181

[Close]
BLAST of MELO3C027603 vs. ExPASy TrEMBL
Match: A0A5A7UNA3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73G00100 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.6e-12
Identity = 52/112 (46.43%), Postives = 56/112 (50.00%), Query Frame = 0 

Query: 36  DKLKRSCARDSGSVSVLRVICVYARGIRFICL---------------------------- 93
           +KLKRSCARDSGS SVLRVICVYARGIRFICL                            
Sbjct: 137 NKLKRSCARDSGSGSVLRVICVYARGIRFICLQISLLTLSVLRNNDAVVEIDFPVPDRLP 196

[Close]
BLAST of MELO3C027603 vs. ExPASy TrEMBL
Match: A0A5A7UPX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73G00010 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.7e-11
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 68  QSRQIQVQKSIIRRLHAIFRSKVAGSPGGGVTLHFGSR 106
           QSRQIQVQKS++RRLHAIFRSKVAGSPGGGVTLHFGSR
Sbjct: 19  QSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVTLHFGSR 56

[Close]
BLAST of MELO3C027603 vs. ExPASy TrEMBL
Match: A0A5A7UJY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold431G00190 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.3e-10
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 68  QSRQIQVQKSIIRRLHAIFRSKVAGSPGGGVTLHFGSR 106
           QSRQIQVQK+++RR HAIFRSKVAGSPGGGVTLHFGSR
Sbjct: 19  QSRQIQVQKNVVRRFHAIFRSKVAGSPGGGVTLHFGSR 56

The following BLAST results are available for this feature:
BLAST of MELO3C027603 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0042134.19.0e-1860.87DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0035073.13.9e-1342.86uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa][more]
KAA0056684.19.6e-1246.43DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0056677.11.4e-1094.74hypothetical protein E6C27_scaffold73G00010 [Cucumis melo var. makuwa][more]
KAA0056192.19.0e-1089.47hypothetical protein E6C27_scaffold431G00190 [Cucumis melo var. makuwa][more]
BLAST of MELO3C027603 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C027603 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TFC54.3e-1860.87Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
A0A5A7SX021.9e-1342.86CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5A7UNA34.6e-1246.43Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73... [more]
A0A5A7UPX36.7e-1194.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UJY24.3e-1089.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C027603 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027603.1MELO3C027603.1mRNA