MELO3C027597 (gene) Melon (DHL92) v4

Overview
NameMELO3C027597
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr12: 9405337 .. 9406038 (-)
RNA-Seq ExpressionMELO3C027597
SyntenyMELO3C027597
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAACCTCAAATCGTGCCCCAAGACATGTTTGGACGAAAGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTGGTGTCAATGGGGGGATGGAAATCAGATAATGGTACGTTCCGTCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCAGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTGAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGTAGTGGCTTTGGGTGGAACGATGAAGTGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGGTATGGAATATAATTTAAACGTCACACAACGTTCACAATGTACATTTAGTTAACAATTTTTCAATCAGTACTCATACGTGATTTGTTTTTTGCCCGCAGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAACCATTCCCGTATTACGACGAACTTACATATGTATTCGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCTTGGTGGCGGATATGACAGATTTGATATAGGGGATGGAAACGAGGACTTCCCGCCCATGTACAGCCAGGGAATTGACCTCTCGTAGGACGATGTACGTGCATCTCGACCTTCTCGCGCTTCAGAGGGTAGGACC

mRNA sequence

ATGTCAACCTCAAATCGTGCCCCAAGACATGTTTGGACGAAAGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTGGTGTCAATGGGGGGATGGAAATCAGATAATGGTACGTTCCGTCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCAGAGAAACTACCTGGATGTCAGACACTGAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGTAGTGGCTTTGGGTGGAACGATGAAGTGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAACCATTCCCGTATTACGACGAACTTACATATGTATTCGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCTTGGTGGCGGATATGACAGATTTGATATAGGGGATGGAAACGAGGACTTCCCGCCCATGTACAGCCAGGGAATTGACCTCTCGTAGGACGATGTACGTGCATCTCGACCTTCTCGCGCTTCAGAGGGTAGGACC

Coding sequence (CDS)

ATGTCAACCTCAAATCGTGCCCCAAGACATGTTTGGACGAAAGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTGGTGTCAATGGGGGGATGGAAATCAGATAATGGTACGTTCCGTCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCAGAGAAACTACCTGGATGTCAGACACTGAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGTAGTGGCTTTGGGTGGAACGATGAAGTGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAACCATTCCCGTATTACGACGAACTTACATATGTATTCGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCTTGGTGGCGGATATGACAGATTTGATATAGGGGATGGAAACGAGGACTTCCCGCCCATGTACAGCCAGGGAATTGACCTCTCGTAG

Protein sequence

MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQTLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNELGGGYDRFDIGDGNEDFPPMYSQGIDLS
Homology
[Close]
BLAST of MELO3C027597 vs. NCBI nr
Match: TYJ96194.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97116.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK01046.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK12167.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 2.8e-93
Identity = 164/184 (89.13%), Postives = 170/184 (92.39%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ------------TLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKG 120
                       TLKRTFQAIAEMRGPACSGFGWNDE KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNELGGGYDRFDIGDGNEDFPPMYSQG 173
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNE GGGYDRFD+GDGNEDFPP+YSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

[Close]
BLAST of MELO3C027597 vs. NCBI nr
Match: KAA0031555.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0043921.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047622.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049406.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 2.8e-93
Identity = 164/184 (89.13%), Postives = 170/184 (92.39%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ------------TLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKG 120
                       TLKRTFQAIAEMRGPACSGFGWNDE KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNELGGGYDRFDIGDGNEDFPPMYSQG 173
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNE GGGYDRFD+GDGNEDFPP+YSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

[Close]
BLAST of MELO3C027597 vs. NCBI nr
Match: KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 2.8e-93
Identity = 164/184 (89.13%), Postives = 170/184 (92.39%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ------------TLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKG 120
                       TLKRTFQAIAEMRGPACSGFGWNDE KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNELGGGYDRFDIGDGNEDFPPMYSQG 173
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNE GGGYDRFD+GDGNEDFPP+YSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

[Close]
BLAST of MELO3C027597 vs. NCBI nr
Match: KAA0044610.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 2.8e-93
Identity = 164/184 (89.13%), Postives = 170/184 (92.39%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ------------TLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKG 120
                       TLKRTFQAIAEMRGPACSGFGWNDE KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNELGGGYDRFDIGDGNEDFPPMYSQG 173
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNE GGGYDRFD+GDGNEDFPP+YSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

[Close]
BLAST of MELO3C027597 vs. NCBI nr
Match: KAA0038065.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.1 bits (902), Expect = 2.8e-93
Identity = 164/184 (89.13%), Postives = 170/184 (92.39%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ------------TLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKG 120
                       TLKRTFQAIAEMRGPACSGFGWNDE KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNELGGGYDRFDIGDGNEDFPPMYSQG 173
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNE GGGYDRFD+GDGNEDFPP+YSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

[Close]
BLAST of MELO3C027597 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 164/184 (89.13%), Postives = 170/184 (92.39%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ------------TLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKG 120
                       TLKRTFQAIAEMRGPACSGFGWNDE KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNELGGGYDRFDIGDGNEDFPPMYSQG 173
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNE GGGYDRFD+GDGNEDFPP+YSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

[Close]
BLAST of MELO3C027597 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 164/184 (89.13%), Postives = 170/184 (92.39%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ------------TLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKG 120
                       TLKRTFQAIAEMRGPACSGFGWNDE KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNELGGGYDRFDIGDGNEDFPPMYSQG 173
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNE GGGYDRFD+GDGNEDFPP+YSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

[Close]
BLAST of MELO3C027597 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 164/184 (89.13%), Postives = 170/184 (92.39%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ------------TLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKG 120
                       TLKRTFQAIAEMRGPACSGFGWNDE KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNELGGGYDRFDIGDGNEDFPPMYSQG 173
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNE GGGYDRFD+GDGNEDFPP+YSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

[Close]
BLAST of MELO3C027597 vs. ExPASy TrEMBL
Match: A0A5D3BCN9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001070 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 164/184 (89.13%), Postives = 170/184 (92.39%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ------------TLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKG 120
                       TLKRTFQAIAEMRGPACSGFGWNDE KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNELGGGYDRFDIGDGNEDFPPMYSQG 173
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNE GGGYDRFD+GDGNEDFPP+YSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

[Close]
BLAST of MELO3C027597 vs. ExPASy TrEMBL
Match: A0A5A7SRU1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00100 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 164/184 (89.13%), Postives = 170/184 (92.39%), Query Frame = 0 

Query: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWT+EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ------------TLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKG 120
                       TLKRTFQAIAEMRGPACSGFGWNDE KCI+AEKELFDNWVRSHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNELGGGYDRFDIGDGNEDFPPMYSQG 173
           LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNE GGGYDRFD+GDGNEDFPP+YSQG
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

[Close]
BLAST of MELO3C027597 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 8.3e-11
Identity = 41/139 (29.50%), Postives = 66/139 (47.48%), Query Frame = 0 

Query: 12  WTKEEEGTLVECLMELVSMGGWKSDNGT---------FRPGYLAQLVRM--MAEKLPGCQ 71
           W+ EE   LV+ L+E ++   W+  NGT         F P    +  R       L   +
Sbjct: 17  WSPEETKLLVQLLVEGIN-NNWRDSNGTISKLTVETKFMPEINKEFCRSKNYNHYLSRMK 76

Query: 72  TLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDEL 131
            LK  +Q+  +++    SGFGW+   K   A  E++ +++++HP  K L    F ++DEL
Sbjct: 77  YLKIQYQSCLDLQ-RFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDEL 136

Query: 132 TYVFGRDRATGRFAETFAD 140
             +FG   ATG+ A    D
Sbjct: 137 QIIFGEGVATGKNAIGLCD 153

[Close]
BLAST of MELO3C027597 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-06
Identity = 35/161 (21.74%), Postives = 71/161 (44.10%), Query Frame = 0 

Query: 5   NRAPRHVWTKEEEGTLVECLMELVSMG-----------GWKSDNGTFRPGYLAQLVRMMA 64
           N   R VWT E +   +E ++E V  G            WK  + +F   +     + + 
Sbjct: 7   NERLRTVWTPEMDQYFIELMVEQVRKGNRFEDHLFSKRAWKFMSCSFTAKFKFLYGKDVL 66

Query: 65  EKLPGCQTLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKGLLNKP 124
           +     +TL+  F+++  +      GF W+D  + ++A+  ++D +++ HP ++    K 
Sbjct: 67  KNRH--KTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKS 126

Query: 125 FPYYDELTYVFGRDRATGRFAETFADVGSNEL---GGGYDR 152
            P Y +L  V+    +  +  E+ ++  S  L     GY+R
Sbjct: 127 IPCYKDLCLVYSDGMSEHKAEESISEGESKTLIQEDDGYNR 163

[Close]
BLAST of MELO3C027597 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-06
Identity = 35/161 (21.74%), Postives = 71/161 (44.10%), Query Frame = 0 

Query: 5   NRAPRHVWTKEEEGTLVECLMELVSMG-----------GWKSDNGTFRPGYLAQLVRMMA 64
           N   R VWT E +   +E ++E V  G            WK  + +F   +     + + 
Sbjct: 7   NERLRTVWTPEMDQYFIELMVEQVRKGNRFEDHLFSKRAWKFMSCSFTAKFKFLYGKDVL 66

Query: 65  EKLPGCQTLKRTFQAIAEMRGPACSGFGWNDEVKCIIAEKELFDNWVRSHPAAKGLLNKP 124
           +     +TL+  F+++  +      GF W+D  + ++A+  ++D +++ HP ++    K 
Sbjct: 67  KNRH--KTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKS 126

Query: 125 FPYYDELTYVFGRDRATGRFAETFADVGSNEL---GGGYDR 152
            P Y +L  V+    +  +  E+ ++  S  L     GY+R
Sbjct: 127 IPCYKDLCLVYSDGMSEHKAEESISEGESKTLIQEDDGYNR 163

[Close]
BLAST of MELO3C027597 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 2.1e-06
Identity = 16/56 (28.57%), Postives = 35/56 (62.50%), Query Frame = 0 

Query: 78  SGFGWNDEVKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRF 134
           +GF W+     +IA+ ++++ ++++HP A+    K  P Y  L ++FG++ + GR+
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDGRY 454

[Close]
BLAST of MELO3C027597 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 9.8e-04
Identity = 16/62 (25.81%), Postives = 34/62 (54.84%), Query Frame = 0 

Query: 79  GFGWNDEVKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFA 138
           GF W+   + +I +  L+  ++++HP A+    KP   + +L  ++G   A GR++ +  
Sbjct: 88  GFVWDQTHQTVIGDDSLWSLYLKAHPEARVYKTKPVLNFSDLCLIYGYTVADGRYSMSSH 147

Query: 139 DV 141
           D+
Sbjct: 148 DL 149

The following BLAST results are available for this feature:
BLAST of MELO3C027597 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C027597 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ96194.12.8e-9389.13retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon p... [more]
KAA0031555.12.8e-9389.13retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon... [more]
KAA0032766.12.8e-9389.13retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0044610.12.8e-9389.13retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0038065.12.8e-9389.13retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C027597 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CWL21.4e-9389.13Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TRV11.4e-9389.13Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DCZ11.4e-9389.13Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BCN91.4e-9389.13Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SRU11.4e-9389.13Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C027597 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G27260.18.3e-1129.50unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.11.6e-0621.74unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.21.6e-0621.74unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G24960.22.1e-0628.57unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G24960.19.8e-0425.81unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 2..140
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 2..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027597.1MELO3C027597.1mRNA