MELO3C027565.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C027565.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionIntegrase catalytic domain-containing protein
Locationchr10: 24595646 .. 24595862 (+)
RNA-Seq ExpressionMELO3C027565.jh1
SyntenyMELO3C027565.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGACGAAATCTTGGAAGGCGACTTCATTGCGAGAGAAGGCTCAGCAGAAACACGGCAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTTGTGCGAGAGATTTAGGATGATGGAGAACAAGGAAGACGAAGAGAAGGTTCGTGCGAGAGATGGCAACCGCGAACAATGAAGACGAAGAGAAGGGAAAATTGAGGGTTTAG

mRNA sequence

ATGGGAAAGACGAAATCTTGGAAGGCGACTTCATTGCGAGAGAAGGCTCAGCAGAAACACGGCAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTTGTGCGAGAGATTTAGGATGATGGAGAACAAGGAAGACGAAGAGAAGGTTCGTGCGAGAGATGGCAACCGCGAACAATGAAGACGAAGAGAAGGGAAAATTGAGGGTTTAG

Coding sequence (CDS)

ATGGGAAAGACGAAATCTTGGAAGGCGACTTCATTGCGAGAGAAGGCTCAGCAGAAACACGGCAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTTGTGCGAGAGATTTAGGATGATGGAGAACAAGGAAGACGAAGAGAAGGTTCGTGCGAGAGATGGCAACCGCGAACAATGA

Protein sequence

MGKTKSWKATSLREKAQQKHGRGFDFREQGGRREGLCERFRMMENKEDEEKVRARDGNREQ
Homology
[Close]
BLAST of MELO3C027565.jh1 vs. NCBI nr
Match: KAA0050651.1 (uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK07783.1 uncharacterized protein E5676_scaffold1737G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.11e-12
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 8  KATSLREKAQQKHGRGFDFREQGGRREGLCERFRMMENKEDEEK 51
          KA S+REKAQQKH R FDF EQGGRREG CERFR+M NKEDEEK
Sbjct: 3  KAASVREKAQQKHDRRFDFHEQGGRREGSCERFRVMANKEDEEK 46

[Close]
BLAST of MELO3C027565.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C784 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00660 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.35e-13
Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 8  KATSLREKAQQKHGRGFDFREQGGRREGLCERFRMMENKEDEEK 51
          KA S+REKAQQKH R FDF EQGGRREG CERFR+M NKEDEEK
Sbjct: 3  KAASVREKAQQKHDRRFDFHEQGGRREGSCERFRVMANKEDEEK 46

The following BLAST results are available for this feature:
BLAST of MELO3C027565.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050651.11.11e-1281.82uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of MELO3C027565.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C027565.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C7845.35e-1381.82Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C027565.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027565.jh1.t1MELO3C027565.jh1.t1mRNA