MELO3C027531 (gene) Melon (DHL92) v4

Overview
NameMELO3C027531
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein, putative, Ty3-gypsy sub-class
Locationchr12: 4337670 .. 4337892 (+)
RNA-Seq ExpressionMELO3C027531
SyntenyMELO3C027531
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GACCAATACAAAACGAAGAAATCGTTGAAGGACTTCAGTTTACGTTCAACTCTAAGGACTTCAATCTACATTCCTGGACTCGTCCCTCACACATTTTCCCAAAGTATAGGTCAGGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTACAATCCGAAATGATAAAAAACATAGTCAATGCTCTTCCAATGAGTGCAAACGCTCATCTGGTGTCAGAACCCACTAA

mRNA sequence

GACCAATACAAAACGAAGAAATCGTTGAAGGACTTCAGTTTACGTTCAACTCTAAGGACTTCAATCTACATTCCTGGACTCGTCCCTCACACATTTTCCCAAAGTATAGGTCAGGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTACAATCCGAAATGATAAAAAACATAGTCAATGCTCTTCCAATGAGTGCAAACGCTCATCTGGTGTCAGAACCCACTAA

Coding sequence (CDS)

CCAATACAAAACGAAGAAATCGTTGAAGGACTTCAGTTTACGTTCAACTCTAAGGACTTCAATCTACATTCCTGGACTCGTCCCTCACACATTTTCCCAAAGTATAGGTCAGGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTACAATCCGAAATGATAAAAAACATAGTCAATGCTCTTCCAATGAGTGCAAACGCTCATCTGGTGTCAGAACCCACT

Protein sequence

PIQNEEIVEGLQFTFNSKDFNLHSWTRPSHIFPKYRSGSELVGGRTKVQSEMIKNIVNALPMSANAHLVSEPT
Homology
BLAST of MELO3C027531 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 18 KDFNLHSWTRPSHIFPKYRSGSELVGGRTKVQSEMIKNIVNALPMS 64
          KDF+LH W   S IFP+YRSGSELVG RTKVQS  I+ I NALP S
Sbjct: 20 KDFSLHCWHHSSPIFPRYRSGSELVGRRTKVQSGTIEKIANALPTS 65

BLAST of MELO3C027531 vs. NCBI nr
Match: KAA0065520.1 (retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-06
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 16   NSKDFNLHSWTRPSHIFPKYRSGSELVGGRTKVQSEMIKNIVNALPMS 64
            NS+ F+L+ W RPS +FPKYRS SE++ GRTKVQ E I+ + NALP S
Sbjct: 1000 NSEYFSLYFWHRPSPVFPKYRSRSEIIEGRTKVQPETIEMMANALPTS 1047

BLAST of MELO3C027531 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 4.6e-05
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 16  NSKDFNLHSWTRPSHIFPKYRSGSELVGGRTKVQSEMIKNIVNALPMS 64
           +SKDF+LHS  RPS +F KYRSG ELV  RTKVQ   I+ + NAL MS
Sbjct: 380 SSKDFSLHSLHRPSLVFAKYRSGCELVWERTKVQHGAIEKMANALRMS 427

BLAST of MELO3C027531 vs. NCBI nr
Match: KAA0047409.1 (retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa] >TYK14084.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 17  SKDFNLHSWTRPSHIFPKYRSGSELVGGRTKVQSEMIKNIVNALPMS 64
           S+DF+LHSW  PS +  KY S +EL GGRTKVQ   I+ +VNAL MS
Sbjct: 92  SEDFSLHSWNCPSLVVLKYSSRNELGGGRTKVQPAKIEKMVNALSMS 138

BLAST of MELO3C027531 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.2e-08
Identity = 32/46 (69.57%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 18 KDFNLHSWTRPSHIFPKYRSGSELVGGRTKVQSEMIKNIVNALPMS 64
          KDF+LH W   S IFP+YRSGSELVG RTKVQS  I+ I NALP S
Sbjct: 20 KDFSLHCWHHSSPIFPRYRSGSELVGRRTKVQSGTIEKIANALPTS 65

BLAST of MELO3C027531 vs. ExPASy TrEMBL
Match: A0A5A7VEB1 (Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00210 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.1e-07
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 16   NSKDFNLHSWTRPSHIFPKYRSGSELVGGRTKVQSEMIKNIVNALPMS 64
            NS+ F+L+ W RPS +FPKYRS SE++ GRTKVQ E I+ + NALP S
Sbjct: 1000 NSEYFSLYFWHRPSPVFPKYRSRSEIIEGRTKVQPETIEMMANALPTS 1047

BLAST of MELO3C027531 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 16  NSKDFNLHSWTRPSHIFPKYRSGSELVGGRTKVQSEMIKNIVNALPMS 64
           +SKDF+LHS  RPS +F KYRSG ELV  RTKVQ   I+ + NAL MS
Sbjct: 380 SSKDFSLHSLHRPSLVFAKYRSGCELVWERTKVQHGAIEKMANALRMS 427

BLAST of MELO3C027531 vs. ExPASy TrEMBL
Match: A0A5A7U1Q6 (Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00650 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.5e-05
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 17  SKDFNLHSWTRPSHIFPKYRSGSELVGGRTKVQSEMIKNIVNALPMS 64
           S+DF+LHSW  PS +  KY S +EL GGRTKVQ   I+ +VNAL MS
Sbjct: 92  SEDFSLHSWNCPSLVVLKYSSRNELGGGRTKVQPAKIEKMVNALSMS 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
TYJ98800.11.7e-0769.57uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa][more]
KAA0065520.11.9e-0660.42retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo v... [more]
KAA0065516.14.6e-0562.50uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa][more]
KAA0047409.11.3e-0459.57retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa... [more]
Match NameE-valueIdentityDescription
A0A5D3BG858.2e-0869.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VEB19.1e-0760.42Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo... [more]
A0A5A7VGQ52.2e-0562.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U1Q66.5e-0559.57Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. maku... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027531.1MELO3C027531.1mRNA