MELO3C027530 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027530
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr10: 7555999 .. 7556391 (-)
RNA-Seq Expression	MELO3C027530
Synteny	MELO3C027530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAGTCCGGGATTGAACATGTCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAGTGAACGTAGAAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGGACATGCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTATGGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACTTCAAGATGCTACTCAAACACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAAGTTCCCGACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAACCGATGA

mRNA sequence

ATGTACAGTCCGGGATTGAACATGTCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAGTGAACGTAGAAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGGACATGCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTATGGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACTTCAAGATGCTACTCAAACACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAAGTTCCCGACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAACCGATGA

Coding sequence (CDS)

ATGTACAGTCCGGGATTGAACATGTCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAGTGAACGTAGAAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGGACATGCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTATGGAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACTTCAAGATGCTACTCAAACACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAAGTTCCCGACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAACCGATGA

Protein sequence

MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCSIILQENR

Homology

[Close]

BLAST of MELO3C027530 vs. NCBI nr
Match: KAA0065892.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 256.5 bits (654), Expect = 1.2e-64
Identity = 128/130 (98.46%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
           MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 173 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 232

Query: 61  AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
           AEWPILQ QDATQTRQEIVRQLE IPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP
Sbjct: 233 AEWPILQRQDATQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 292

Query: 121 YCSIILQENR 131
           YCSIILQENR
Sbjct: 293 YCSIILQENR 302

[Close]

BLAST of MELO3C027530 vs. NCBI nr
Match: KAA0065737.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.8 bits (647), Expect = 7.8e-64
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
           MYSPGLNMSPDDLMETRTARVSERRNVSS SKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 169 MYSPGLNMSPDDLMETRTARVSERRNVSSESKRKRPGHATDSGDIVRTAIEYGNEQLHRI 228

Query: 61  AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
           AEWPILQ QDATQTRQ+IVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP
Sbjct: 229 AEWPILQRQDATQTRQDIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 288

Query: 121 YCSIILQENR 131
           YCSIILQENR
Sbjct: 289 YCSIILQENR 298

[Close]

BLAST of MELO3C027530 vs. NCBI nr
Match: KAA0041028.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.8 bits (647), Expect = 7.8e-64
Identity = 127/130 (97.69%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
           MYSPGLNMSPDDLME RTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 1   MYSPGLNMSPDDLMEIRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60

Query: 61  AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
           AEWPILQ QDATQTRQEIVRQLEAIPELTLMDRCRLMRI MRNVDDMKAFLEVPDNMKYP
Sbjct: 61  AEWPILQHQDATQTRQEIVRQLEAIPELTLMDRCRLMRIFMRNVDDMKAFLEVPDNMKYP 120

Query: 121 YCSIILQENR 131
           YCSIILQENR
Sbjct: 121 YCSIILQENR 130

[Close]

BLAST of MELO3C027530 vs. NCBI nr
Match: KAA0054687.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.4 bits (646), Expect = 1.0e-63
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
           MYS GLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 1   MYSRGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60

Query: 61  AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
           AEWPILQ QDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP
Sbjct: 61  AEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120

Query: 121 YCSIILQENR 131
           YC+IILQENR
Sbjct: 121 YCNIILQENR 130

[Close]

BLAST of MELO3C027530 vs. NCBI nr
Match: KAA0050782.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 252.7 bits (644), Expect = 1.7e-63
Identity = 126/130 (96.92%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
           MYSPGLNMSPDDLMETRTARVSERRNVSSGSK KRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 125 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKWKRPGHATDSGDIVRTAIEYGNEQLHRI 184

Query: 61  AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
           AEWPILQ QDATQTRQEIVRQLEAIPELTLMDRCRLMRI+MRNVDDMKAFL+VPDNMKYP
Sbjct: 185 AEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRIIMRNVDDMKAFLKVPDNMKYP 244

Query: 121 YCSIILQENR 131
           YCSIILQENR
Sbjct: 245 YCSIILQENR 254

[Close]

BLAST of MELO3C027530 vs. ExPASy TrEMBL
Match: A0A5A7VC47 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00690 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 5.9e-65
Identity = 128/130 (98.46%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
           MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 173 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 232

Query: 61  AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
           AEWPILQ QDATQTRQEIVRQLE IPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP
Sbjct: 233 AEWPILQRQDATQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 292

Query: 121 YCSIILQENR 131
           YCSIILQENR
Sbjct: 293 YCSIILQENR 302

[Close]

BLAST of MELO3C027530 vs. ExPASy TrEMBL
Match: A0A5A7VF53 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00250 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.8e-64
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
           MYSPGLNMSPDDLMETRTARVSERRNVSS SKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 169 MYSPGLNMSPDDLMETRTARVSERRNVSSESKRKRPGHATDSGDIVRTAIEYGNEQLHRI 228

Query: 61  AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
           AEWPILQ QDATQTRQ+IVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP
Sbjct: 229 AEWPILQRQDATQTRQDIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 288

Query: 121 YCSIILQENR 131
           YCSIILQENR
Sbjct: 289 YCSIILQENR 298

[Close]

BLAST of MELO3C027530 vs. ExPASy TrEMBL
Match: A0A5A7TDI5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31351G00010 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.8e-64
Identity = 127/130 (97.69%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
           MYSPGLNMSPDDLME RTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 1   MYSPGLNMSPDDLMEIRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60

Query: 61  AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
           AEWPILQ QDATQTRQEIVRQLEAIPELTLMDRCRLMRI MRNVDDMKAFLEVPDNMKYP
Sbjct: 61  AEWPILQHQDATQTRQEIVRQLEAIPELTLMDRCRLMRIFMRNVDDMKAFLEVPDNMKYP 120

Query: 121 YCSIILQENR 131
           YCSIILQENR
Sbjct: 121 YCSIILQENR 130

[Close]

BLAST of MELO3C027530 vs. ExPASy TrEMBL
Match: A0A5A7UJB1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G005120 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.0e-64
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
           MYS GLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 1   MYSRGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60

Query: 61  AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
           AEWPILQ QDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP
Sbjct: 61  AEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120

Query: 121 YCSIILQENR 131
           YC+IILQENR
Sbjct: 121 YCNIILQENR 130

[Close]

BLAST of MELO3C027530 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.5e-64
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 60
           MYS GLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI
Sbjct: 515 MYSLGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 574

Query: 61  AEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 120
           AEWPILQ QDATQTRQEIV+QLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP
Sbjct: 575 AEWPILQRQDATQTRQEIVQQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYP 634

Query: 121 YCSIILQENR 131
           YCSIILQENR
Sbjct: 635 YCSIILQENR 644

The following BLAST results are available for this feature:

BLAST of MELO3C027530 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065892.1	1.2e-64	98.46	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065737.1	7.8e-64	97.69	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0041028.1	7.8e-64	97.69	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054687.1	1.0e-63	97.69	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0050782.1	1.7e-63	96.92	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C027530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C027530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VC47	5.9e-65	98.46	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VF53	3.8e-64	97.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TDI5	3.8e-64	97.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UJB1	5.0e-64	97.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SWD8	8.5e-64	97.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C027530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027530.1	MELO3C027530.1	mRNA