MELO3C027528 (gene) Melon (DHL92) v4

Overview
NameMELO3C027528
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Locationchr09: 13636482 .. 13639647 (-)
RNA-Seq ExpressionMELO3C027528
SyntenyMELO3C027528
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTTTTATATCGCAGGGAAAAAAGTGGTCCTGCAACGATTTCTTTGTTTTGTATTGGTCATAAGTACTTGTACCTTTGGCATTCATACTCTGAGGACTTTAGTCCACATTCTTGGCATCGTCCCTCCACATTTTCTCAAAGTATAAGTCAGAAAGCAACCTCGTTGGAGGAAGAACTAAGGTGCAACCCGAAACGATCGAAAAGATGGCTAATGCTCTTCCAACGAGTGGTGAACGCTTGTCCAGTGTCAAAAACAAATGAAAATGCATTTCAGCAAAGTAGACGAGCTAAGCTCAAGAACTTCTGGTGTTTGCCCCAGAAAAATGCAAACGAGAATGCCCCAAAAGCGGTCCTACAACAGTTTCTTTGTTTTGTATTGGTCATAACTACTTCGAGCTTCGAGACTCATACTTCGAGGACTTCAGTGTACATTCCTGGCATCATCCCTCACACATTTTCCCAAAATATGGGTCAGGAAGCGAGCTTGTTGTACGGAGAACTAAGGTTCAACCCGACACGATCGAAAAGATGGCCAATGCCCTTCCAACGAGTGGTAAACGCTCGTCCGATGTTAGAAACCACTCAAAATTTACTTCAGCGAAGGAAACGGGCTAAGCTTAAGAACTTCTGGTGTTTGTCCAAGGAAAATGCGAACGAGAATGCCCTGGCGTCAATTTTTCTATCACGGGGAAAAATGCAGTTCTGTAACGGTTTCTTTGTTTTGTATTGGTCATAACTGCTTCGAGCTTTGGAACTCATACTCCAAGGACTTAAGTCTACATTCCTGGCATCGTCCCTTCACATTATCCCAAAGTATACGTTGGAAAGCTATCTCGTTGATGGGAGAACTAAGGTGCAACTCGAAAACGATCGAAAAGATGGCCAATGCTCTTCCAACGAGTGGCGAACGAAAGTTCGGTGTCAGAAACCACTGAAAACGCATTTTAGCAAAGAAAACGGGCTAAGCTCAAGAACTTCTAGTTTTCGTCCCAGGAAAGTTTGAATGAGAATGCCCCGGACTTAATTTTTCTATCGCAGGGTAAAAAGCGGTCGTACAACGGTTTCTTTGTTTTGTATTGGTCATAAGTGCTTCGAGCTTCGGGACTCATACTTCAAGTACTTCAATCTACATTCCAGGCATTGTGCCTAACGCATTTTCCCAAAGTATATGTCGGGAAGCGCGCTCATTGGAGGGAGAACTAAGGTGCAACCTGAAATGATAAAAAAGATGACCAATGCTCTTACAACGAGTGGAAAACGCTCGTCCGTAGTTTGGTGTTCATCCCAGGAAAATTCATTTCAGCAAAGGAAATAGACTAAGCTGAAGAACATCTGGGGTTCGTCCTAGGAAAATGCGAACGAGATTACCCCAGACTCAGTTTTTCTATCGCGGAGTAAAAAGCGGTTCTCTAACAGTTTCTTTATTTTTTATTGGTCATAAGTGCTTCGAGCTTCGGGACTGATACTCCGAGGACTTCAGTCTAAATTCCTGGCATCATCCCTCACAAATTTTCCTAAAGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTGCAACCTGAAACAATCGAAAAGATGGCCAATACTCTTCCTACGAGTGGTAAACGCTCGTCCTGTGTCAGAAACAGCTTAAAATGCATTTCAGCGAAGGAAACGGGCTAAGCTCAAGATGTTTTGGTGTTTGTCTCAGGAAAATGCGAATGCAAATACCCCGAACTCAGTTTTTCTATTGTGGGGTAAAAAGCGGTCCTACAAACGATTTCTTTGTTTCGTATTGCTCATAAGTGCTTGAGCTTTAGAACTCATAATCCAGGACTCATAATCCAAGGACTTCAGTCTAAATTTTGGGCATCGTCCCTCACACATTTTCCAAAAGTATAGGTTGGGAAGCGAGCTCGTTGGAGCGAAGAACTAAGGTGCAACCCAAAACAATCGAAAAGATGGCCAATGCTCTTGCAACGAGTGGCGAACGCTCGTCTGGTGTCAGAAACAACTGAAAATGCATTTCAGGGAAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAAGGAAACGGGCTAAGCTCAGAACTTCTAGTGTTCATCCAGGAAAATGCGAAGGAGAATGCCCCGGACCGATTTTTCTATCGCGGGGTAAAAAAGCGATCCTGCAACAGTTTCTTTGTTTTGTATTGGTCATAAGTGCTTCAAGCTTTGGAAATCATACTCTAAGGACTTTAGTTACATTCCTAGCATCGTCCCTCACACATTTTCCCAAAGTATAGGTCGGGAAATGAGCTCGTGTCAGGAAGAACTAAGGTACAACCCGAAACGATAAAAAAGATGGCCAATGCTCGTTCGACAAGTGGCCAACACTTGTACGGAGTCAGAAACCACAAAAAATACATTACCAGTGAAGGAAATGGAGTAAGCTCAAGAATTTCTAATGTTCGTCCCAAGTCAATCCGAACGAGAATGCCTCAGACTCAGTTTTTCTACCTCGGGGTAAAAATCGAGGAGTCAACGGTTTCTTTGTTTTGTATTGGTCACAAGTATTTCGAGCTTCGGAATTCATATTTCGAGGACATTAGTCTAAATTATTGGCATCGTCACTCACACATTTTCCCAAAGTATAGGTTAGGAAGCGAGCTCGTTCGAGGGAGAACTAAGATGTAACCCGAAACGATAGAAAAGATGGCCAATACTCTTCTAACGAGTGGCGAACACTCATCTAGAGTCAGAAACAACAATAAATCCATTTCCAGTGAAGGAAATGGAGTAAGCTCAAGAACTTCTACTGTTCATCCCAAGAAAATGCGAACGAGAATTCCTCATAGTCAGTTTTTCTACCTCAGGGTAAAAATCGAGTCGTCAACTGTTTCTTTTTTTTGTATTGGTCATAACTGTTTCAAGCTTCTGGACTCATACTCTGATTACATCAATCTACATTTCTTGCATCGTCCCCAACACATTTTCCTAAAGTATAGATTTAGAAACGAGCTCGTTGGAGGGAGAACTAAGGTGCAACCCGTAACGATCGAAAAGATGGCCAATCCTCTTCCAACGAGTGGCGAACGCTCATTTGGTGTTCGAATCCTTTGAAAA

mRNA sequence

AGTTTTTATATCGCAGGGAAAAAAGTGGTCCTGCAACGATTTCTTTGTTTTGTATTGGTCATAACTGTTTCAAGCTTCTGGACTCATACTCTGATTACATCAATCTACATTTCTTGCATCGTCCCCAACACATTTTCCTAAAGTATAGATTTAGAAACGAGCTCGTTGGAGGGAGAACTAAGGTGCAACCCGTAACGATCGAAAAGATGGCCAATCCTCTTCCAACGAGTGGCGAACGCTCATTTGGTGTTCGAATCCTTTGAAAA

Coding sequence (CDS)

TTTTTATATCGCAGGGAAAAAAGTGGTCCTGCAACGATTTCTTTGTTTTGTATTGGTCATAACTGTTTCAAGCTTCTGGACTCATACTCTGATTACATCAATCTACATTTCTTGCATCGTCCCCAACACATTTTCCTAAAGTATAGATTTAGAAACGAGCTCGTTGGAGGGAGAACTAAGGTGCAACCCGTAACGATCGAAAAGATGGCCAATCCTCTTCCAACGAGTGGCGAACGCTCATTTGGTGTTCGAATCCTTTGA

Protein sequence

FLYRREKSGPATISLFCIGHNCFKLLDSYSDYINLHFLHRPQHIFLKYRFRNELVGGRTKVQPVTIEKMANPLPTSGERSFGVRIL
Homology
[Close]
BLAST of MELO3C027528 vs. NCBI nr
Match: KAA0065520.1 (retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 3.1e-16
Identity = 50/107 (46.73%), Postives = 61/107 (57.01%), Query Frame = 0 

Query: 1    FLYRREKSGPATISLFCIGHNCFKLLDSY---------------------------SDYI 60
            + YRR KS P  + LFC+GH  F+L DSY                           S+Y 
Sbjct: 945  YFYRRVKSVPTRVCLFCVGHKRFELRDSYPRTLVYIPGIVPHPFSQSIALRATGLNSEYF 1004

Query: 61   NLHFLHRPQHIFLKYRFRNELVGGRTKVQPVTIEKMANPLPTSGERS 81
            +L+F HRP  +F KYR R+E++ GRTKVQP TIE MAN LPTSGERS
Sbjct: 1005 SLYFWHRPSPVFPKYRSRSEIIEGRTKVQPETIEMMANALPTSGERS 1051

[Close]
BLAST of MELO3C027528 vs. NCBI nr
Match: KAA0051945.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12215.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 3.7e-09
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 1  FLYRREKSGPATISLFCIGHNCFKLLDSYSDYINLHFLHRPQHIFLKYRFRNELVGGRTK 60
          FLY   KSGP+T+ LF IGH CF+L DSY +  NLH  H P HI+ KYR  +EL GGR K
Sbjct: 30 FLYLEAKSGPSTVPLFRIGHKCFELWDSYFENFNLHSWHWPSHIYSKYRSGSEL-GGRKK 88

[Close]
BLAST of MELO3C027528 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 38/66 (57.58%), Postives = 41/66 (62.12%), Query Frame = 0 

Query: 21  NCFKLLDSYSDYINLHFLHRPQHIFLKYRFRNELVGGRTKVQPVTIEKMANPLPTSGERS 80
           N F+L DS S   +LH LHRP  +F KYR   ELV  RTKVQ   IEKMAN L  SG  S
Sbjct: 372 NRFELQDSSSKDFSLHSLHRPSLVFAKYRSGCELVWERTKVQHGAIEKMANALRMSGASS 431

Query: 81  FGVRIL 87
           FG R L
Sbjct: 432 FGTRAL 437

[Close]
BLAST of MELO3C027528 vs. NCBI nr
Match: KAA0047409.1 (retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa] >TYK14084.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-06
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 27  DSYSDYINLHFLHRPQHIFLKYRFRNELVGGRTKVQPVTIEKMANPLPTSGERS 81
           +SYS+  +LH  + P  + LKY  RNEL GGRTKVQP  IEKM N L  SGERS
Sbjct: 89  NSYSEDFSLHSWNCPSLVVLKYSSRNELGGGRTKVQPAKIEKMVNALSMSGERS 142

[Close]
BLAST of MELO3C027528 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 5.5e-05
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 34 NLHFLHRPQHIFLKYRFRNELVGGRTKVQPVTIEKMANPLPTSGERS 81
          +LH  H    IF +YR  +ELVG RTKVQ  TIEK+AN LPTSGERS
Sbjct: 23 SLHCWHHSSPIFPRYRSGSELVGRRTKVQSGTIEKIANALPTSGERS 69

[Close]
BLAST of MELO3C027528 vs. ExPASy TrEMBL
Match: A0A5A7VEB1 (Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00210 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 50/107 (46.73%), Postives = 61/107 (57.01%), Query Frame = 0 

Query: 1    FLYRREKSGPATISLFCIGHNCFKLLDSY---------------------------SDYI 60
            + YRR KS P  + LFC+GH  F+L DSY                           S+Y 
Sbjct: 945  YFYRRVKSVPTRVCLFCVGHKRFELRDSYPRTLVYIPGIVPHPFSQSIALRATGLNSEYF 1004

Query: 61   NLHFLHRPQHIFLKYRFRNELVGGRTKVQPVTIEKMANPLPTSGERS 81
            +L+F HRP  +F KYR R+E++ GRTKVQP TIE MAN LPTSGERS
Sbjct: 1005 SLYFWHRPSPVFPKYRSRSEIIEGRTKVQPETIEMMANALPTSGERS 1051

[Close]
BLAST of MELO3C027528 vs. ExPASy TrEMBL
Match: A0A5D3CKZ2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00020 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 1  FLYRREKSGPATISLFCIGHNCFKLLDSYSDYINLHFLHRPQHIFLKYRFRNELVGGRTK 60
          FLY   KSGP+T+ LF IGH CF+L DSY +  NLH  H P HI+ KYR  +EL GGR K
Sbjct: 30 FLYLEAKSGPSTVPLFRIGHKCFELWDSYFENFNLHSWHWPSHIYSKYRSGSEL-GGRKK 88

[Close]
BLAST of MELO3C027528 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.4e-08
Identity = 38/66 (57.58%), Postives = 41/66 (62.12%), Query Frame = 0 

Query: 21  NCFKLLDSYSDYINLHFLHRPQHIFLKYRFRNELVGGRTKVQPVTIEKMANPLPTSGERS 80
           N F+L DS S   +LH LHRP  +F KYR   ELV  RTKVQ   IEKMAN L  SG  S
Sbjct: 372 NRFELQDSSSKDFSLHSLHRPSLVFAKYRSGCELVWERTKVQHGAIEKMANALRMSGASS 431

Query: 81  FGVRIL 87
           FG R L
Sbjct: 432 FGTRAL 437

[Close]
BLAST of MELO3C027528 vs. ExPASy TrEMBL
Match: A0A5A7U1Q6 (Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00650 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 27  DSYSDYINLHFLHRPQHIFLKYRFRNELVGGRTKVQPVTIEKMANPLPTSGERS 81
           +SYS+  +LH  + P  + LKY  RNEL GGRTKVQP  IEKM N L  SGERS
Sbjct: 89  NSYSEDFSLHSWNCPSLVVLKYSSRNELGGGRTKVQPAKIEKMVNALSMSGERS 142

[Close]
BLAST of MELO3C027528 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-05
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0 

Query: 34 NLHFLHRPQHIFLKYRFRNELVGGRTKVQPVTIEKMANPLPTSGERS 81
          +LH  H    IF +YR  +ELVG RTKVQ  TIEK+AN LPTSGERS
Sbjct: 23 SLHCWHHSSPIFPRYRSGSELVGRRTKVQSGTIEKIANALPTSGERS 69

The following BLAST results are available for this feature:
BLAST of MELO3C027528 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065520.13.1e-1646.73retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo v... [more]
KAA0051945.13.7e-0958.33pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12215... [more]
KAA0065516.11.5e-0757.58uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa][more]
KAA0047409.12.2e-0659.26retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa... [more]
TYJ98800.15.5e-0563.83uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa][more]
BLAST of MELO3C027528 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C027528 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VEB11.5e-1646.73Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo... [more]
A0A5D3CKZ21.8e-0958.33Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7VGQ57.4e-0857.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U1Q61.1e-0659.26Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. maku... [more]
A0A5D3BG852.6e-0563.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C027528 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027528.1MELO3C027528.1mRNA