MELO3C027508 (gene) Melon (DHL92) v4

Overview
NameMELO3C027508
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr10: 7752665 .. 7752889 (-)
RNA-Seq ExpressionMELO3C027508
SyntenyMELO3C027508
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATACTTCAAATATCGAACCCTAGATTTTGCACAAAAGGATGCTACACGATGACTCGAAACGACGGCGATGGAGCGACCTTGACCAAGCTGAAGAAGAACAACGCTCGGTGACGGAGCGACATTCGACGGATGACGTTTGGAAGATGGAGCGACGTCGACGAGTTCACAGCGACAGACGCGAAGAAAGTAAAGAAAAAATTGGGGGAGGCGCGCGCGAGAA

mRNA sequence

ATGAAATACTTCAAATATCGAACCCTAGATTTTGCACAAAAGGATGCTACACGATGACTCGAAACGACGGCGATGGAGCGACCTTGACCAAGCTGAAGAAGAACAACGCTCGGTGACGGAGCGACATTCGACGGATGACGTTTGGAAGATGGAGCGACGTCGACGAGTTCACAGCGACAGACGCGAAGAAAGTAAAGAAAAAATTGGGGGAGGCGCGCGCGAGAA

Coding sequence (CDS)

ATGCTACACGATGACTCGAAACGACGGCGATGGAGCGACCTTGACCAAGCTGAAGAAGAACAACGCTCGGTGACGGAGCGACATTCGACGGATGACGTTTGGAAGATGGAGCGACGTCGACGAGTTCACAGCGACAGACGCGAAGAAAGTAAAGAAAAAATTGGGGGAGGCGCGCGCGAG

Protein sequence

MLHDDSKRRRWSDLDQAEEEQRSVTERHSTDDVWKMERRRRVHSDRREESKEKIGGGARE
Homology
[Close]
BLAST of MELO3C027508 vs. NCBI nr
Match: KAA0051559.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK21263.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 5.7e-17
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MLHDDSKRRRWSDLDQAEEEQRSVTERHSTDDVWKMERRRRVHSDRREES 51
          MLHDDSKRRRWSDLDQAEEEQRSVTERHSTDDVWKMERRRRVHSDRREE+
Sbjct: 1  MLHDDSKRRRWSDLDQAEEEQRSVTERHSTDDVWKMERRRRVHSDRREEN 50

[Close]
BLAST of MELO3C027508 vs. ExPASy TrEMBL
Match: A0A5D3DCG1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00140 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-17
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MLHDDSKRRRWSDLDQAEEEQRSVTERHSTDDVWKMERRRRVHSDRREES 51
          MLHDDSKRRRWSDLDQAEEEQRSVTERHSTDDVWKMERRRRVHSDRREE+
Sbjct: 1  MLHDDSKRRRWSDLDQAEEEQRSVTERHSTDDVWKMERRRRVHSDRREEN 50

The following BLAST results are available for this feature:
BLAST of MELO3C027508 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051559.15.7e-1798.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
BLAST of MELO3C027508 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C027508 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DCG12.7e-1798.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of MELO3C027508 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027508.1MELO3C027508.1mRNA