MELO3C027462 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027462
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Cytochrome b559 subunit alpha
Location	chr10: 8195404 .. 8195652 (-)
RNA-Seq Expression	MELO3C027462
Synteny	MELO3C027462

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAAAGCACGAGAGAACATTCTTTTGCTGATATTATCACCAATATTCAATATTTGGTCATTCAGAGCATTACTATACCTTGTTTATTCATTGTAGGTTGGCTATTCATTAACACGGGTTTGGTTTACAATGTTTTTGTAAGCGCTCGTCCAAATGAGTATTTTATAGAGAGTCGACAAGTAATTCCATTAATAATTGGCAGTTTTGATTCTTTGAAACAACTCGATGAATTTAGTAGATCTTTT

mRNA sequence

ATGTCTGAAAGCACGAGAGAACATTCTTTTGCTGATATTATCACCAATATTCAATATTTGGTCATTCAGAGCATTACTATACCTTGTTTATTCATTGTAGGTTGGCTATTCATTAACACGGGTTTGGTTTACAATGTTTTTGTAAGCGCTCGTCCAAATGAGTATTTTATAGAGAGTCGACAAGTAATTCCATTAATAATTGGCAGTTTTGATTCTTTGAAACAACTCGATGAATTTAGTAGATCTTTT

Coding sequence (CDS)

ATGTCTGAAAGCACGAGAGAACATTCTTTTGCTGATATTATCACCAATATTCAATATTTGGTCATTCAGAGCATTACTATACCTTGTTTATTCATTGTAGGTTGGCTATTCATTAACACGGGTTTGGTTTACAATGTTTTTGTAAGCGCTCGTCCAAATGAGTATTTTATAGAGAGTCGACAAGTAATTCCATTAATAATTGGCAGTTTTGATTCTTTGAAACAACTCGATGAATTTAGTAGATCTTTT

Protein sequence

MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESRQVIPLIIGSFDSLKQLDEFSRSF

Homology

[Close]

BLAST of MELO3C027462 vs. NCBI nr
Match: TYG76194.1 (hypothetical protein ES288_D03G094300v1 [Gossypium darwinii])

HSP 1 Score: 127.5 bits (319), Expect = 5.4e-26
Identity = 65/83 (78.31%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1   MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
           MSEST E SFADIIT+I+Y VI SITIP LFIVGWLF++TGL Y+VF S RPNEYF ESR
Sbjct: 110 MSESTGERSFADIITSIRYWVIHSITIPSLFIVGWLFVSTGLAYDVFGSPRPNEYFTESR 169

Query: 61  QVIPLIIGSFDSLKQLDEFSRSF 84
           Q IPLI G FDSL+QLDEFSRSF
Sbjct: 170 QGIPLITGRFDSLEQLDEFSRSF 192

[Close]

BLAST of MELO3C027462 vs. NCBI nr
Match: KAB2037620.1 (hypothetical protein ES319_D03G087500v1 [Gossypium barbadense])

HSP 1 Score: 127.5 bits (319), Expect = 5.4e-26
Identity = 65/83 (78.31%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
          MSEST E SFADIIT+I+Y VI SITIP LFIVGWLF++TGL Y+VF S RPNEYF ESR
Sbjct: 1  MSESTGERSFADIITSIRYWVIHSITIPSLFIVGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QVIPLIIGSFDSLKQLDEFSRSF 84
          Q IPLI G FDSL+QLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C027462 vs. NCBI nr
Match: TYH87637.1 (hypothetical protein ES332_D01G131300v1 [Gossypium tomentosum])

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-25
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1   MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
           MS ST E SFADIIT+I+Y VI SITIP LFI GWLF++TGL YNVF S RPNEYF ESR
Sbjct: 110 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYNVFGSPRPNEYFTESR 169

Query: 61  QVIPLIIGSFDSLKQLDEFSRSF 84
           Q IPLI G FDSL+QLDEFSRSF
Sbjct: 170 QGIPLITGRFDSLEQLDEFSRSF 192

[Close]

BLAST of MELO3C027462 vs. NCBI nr
Match: CAB4074464.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-25
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1   MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
           MS ST EHSFADIITNI Y VI SITIP LFI GWLF++TGL Y+VF   RPNEYF E+R
Sbjct: 33  MSGSTGEHSFADIITNICYWVIHSITIPSLFIAGWLFVSTGLAYDVFGIPRPNEYFTENR 92

Query: 61  QVIPLIIGSFDSLKQLDEFSRSF 84
           Q IPLIIG FDSL+QLDEFSRSF
Sbjct: 93  QGIPLIIGRFDSLEQLDEFSRSF 115

[Close]

BLAST of MELO3C027462 vs. NCBI nr
Match: YP_009539687.1 (photosystem II cytochrome b559 alpha subunit [Dracaena cochinchinensis] >YP_010042942.1 photosystem II cytochrome b559 alpha subunit [Dracaena fragrans] >AEX95614.1 photosystem II cytochrome b559 alpha subunit [Sansevieria trifasciata] >QGX05824.1 photosystem II cytochrome b559 alpha subunit [Dracaena angustifolia] >QGX06076.1 photosystem II cytochrome b559 alpha subunit [Dracaena elliptica] >QGX06161.1 photosystem II cytochrome b559 alpha subunit [Dracaena hokouensis] >QGX06246.1 photosystem II cytochrome b559 alpha subunit [Dracaena terniflora] >QNV48583.1 photosystem II cytochrome b559 alpha subunit [Sansevieria trifasciata var. laurentii])

HSP 1 Score: 124.8 bits (312), Expect = 3.5e-25
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
          MS ST E SFADIIT+I+Y VI SITIP LFI GWLF++TGL Y+VF S RPNEYF ESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QVIPLIIGSFDSLKQLDEFSRSF 84
          Q IPLI G FDSLKQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLKQLDEFSRSF 83

[Close]

BLAST of MELO3C027462 vs. ExPASy Swiss-Prot
Match: Q70XY9 (Cytochrome b559 subunit alpha OS=Amborella trichopoda OX=13333 GN=psbE PE=3 SV=3)

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-27
Identity = 63/83 (75.90%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
          MS ST E SFADIIT+I+Y VI SITIP LFI GWLF++TGL Y+VF S RPNEYF ESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QVIPLIIGSFDSLKQLDEFSRSF 84
          Q IPLI G FDSL+QLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C027462 vs. ExPASy Swiss-Prot
Match: P56779 (Cytochrome b559 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=psbE PE=1 SV=4)

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-27
Identity = 63/83 (75.90%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
          MS ST E SFADIIT+I+Y VI SITIP LFI GWLF++TGL Y+VF S RPNEYF ESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QVIPLIIGSFDSLKQLDEFSRSF 84
          Q IPLI G FDSL+QLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C027462 vs. ExPASy Swiss-Prot
Match: P59702 (Cytochrome b559 subunit alpha OS=Atropa belladonna OX=33113 GN=psbE PE=3 SV=3)

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-27
Identity = 63/83 (75.90%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
          MS ST E SFADIIT+I+Y VI SITIP LFI GWLF++TGL Y+VF S RPNEYF ESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QVIPLIIGSFDSLKQLDEFSRSF 84
          Q IPLI G FDSL+QLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C027462 vs. ExPASy Swiss-Prot
Match: P69382 (Cytochrome b559 subunit alpha OS=Beta vulgaris OX=161934 GN=psbE PE=3 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-27
Identity = 63/83 (75.90%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
          MS ST E SFADIIT+I+Y VI SITIP LFI GWLF++TGL Y+VF S RPNEYF ESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QVIPLIIGSFDSLKQLDEFSRSF 84
          Q IPLI G FDSL+QLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C027462 vs. ExPASy Swiss-Prot
Match: Q4VZH5 (Cytochrome b559 subunit alpha OS=Cucumis sativus OX=3659 GN=psbE PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-27
Identity = 63/83 (75.90%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
          MS ST E SFADIIT+I+Y VI SITIP LFI GWLF++TGL Y+VF S RPNEYF ESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QVIPLIIGSFDSLKQLDEFSRSF 84
          Q IPLI G FDSL+QLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C027462 vs. ExPASy TrEMBL
Match: A0A5J5S2D3 (Cytochrome b559 subunit alpha OS=Gossypium barbadense OX=3634 GN=ES319_D03G087500v1 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-26
Identity = 65/83 (78.31%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
          MSEST E SFADIIT+I+Y VI SITIP LFIVGWLF++TGL Y+VF S RPNEYF ESR
Sbjct: 1  MSESTGERSFADIITSIRYWVIHSITIPSLFIVGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QVIPLIIGSFDSLKQLDEFSRSF 84
          Q IPLI G FDSL+QLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C027462 vs. ExPASy TrEMBL
Match: A0A5D2D469 (Cytochrome b559 subunit alpha OS=Gossypium darwinii OX=34276 GN=ES288_D03G094300v1 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-26
Identity = 65/83 (78.31%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1   MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
           MSEST E SFADIIT+I+Y VI SITIP LFIVGWLF++TGL Y+VF S RPNEYF ESR
Sbjct: 110 MSESTGERSFADIITSIRYWVIHSITIPSLFIVGWLFVSTGLAYDVFGSPRPNEYFTESR 169

Query: 61  QVIPLIIGSFDSLKQLDEFSRSF 84
           Q IPLI G FDSL+QLDEFSRSF
Sbjct: 170 QGIPLITGRFDSLEQLDEFSRSF 192

[Close]

BLAST of MELO3C027462 vs. ExPASy TrEMBL
Match: A0A5D2M8G7 (Cytochrome b559 subunit alpha OS=Gossypium tomentosum OX=34277 GN=ES332_D01G131300v1 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1   MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
           MS ST E SFADIIT+I+Y VI SITIP LFI GWLF++TGL YNVF S RPNEYF ESR
Sbjct: 110 MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYNVFGSPRPNEYFTESR 169

Query: 61  QVIPLIIGSFDSLKQLDEFSRSF 84
           Q IPLI G FDSL+QLDEFSRSF
Sbjct: 170 QGIPLITGRFDSLEQLDEFSRSF 192

[Close]

BLAST of MELO3C027462 vs. ExPASy TrEMBL
Match: A0A6S7L5K1 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS3292 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1   MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
           MS ST EHSFADIITNI Y VI SITIP LFI GWLF++TGL Y+VF   RPNEYF E+R
Sbjct: 33  MSGSTGEHSFADIITNICYWVIHSITIPSLFIAGWLFVSTGLAYDVFGIPRPNEYFTENR 92

Query: 61  QVIPLIIGSFDSLKQLDEFSRSF 84
           Q IPLIIG FDSL+QLDEFSRSF
Sbjct: 93  QGIPLIIGRFDSLEQLDEFSRSF 115

[Close]

BLAST of MELO3C027462 vs. ExPASy TrEMBL
Match: A0A7S8CUW5 (Photosystem II cytochrome b559 alpha subunit OS=Dracaena fragrans OX=231032 GN=psbE PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.7e-25
Identity = 64/83 (77.11%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
          MS ST E SFADIIT+I+Y VI SITIP LFI GWLF++TGL Y+VF S RPNEYF ESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QVIPLIIGSFDSLKQLDEFSRSF 84
          Q IPLI G FDSLKQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLKQLDEFSRSF 83

[Close]

BLAST of MELO3C027462 vs. TAIR 10
Match: ATCG00580.1 (photosystem II reaction center protein E )

HSP 1 Score: 121.3 bits (303), Expect = 3.6e-28
Identity = 62/83 (74.70%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  MSESTREHSFADIITNIQYLVIQSITIPCLFIVGWLFINTGLVYNVFVSARPNEYFIESR 60
          MS ST E SFADIIT+I+Y VI SITIP LFI GWLF++TGL Y+VF S RPNEYF ESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QVIPLIIGSFDSLKQLDEFSRSF 84
          Q IPLI G FD L+QLDEFSRSF
Sbjct: 61 QGIPLITGRFDPLEQLDEFSRSF 83

The following BLAST results are available for this feature:

BLAST of MELO3C027462 vs. NCBI nr


Match Name	E-value	Identity	Description
TYG76194.1	5.4e-26	78.31	hypothetical protein ES288_D03G094300v1 [Gossypium darwinii]	[more]
KAB2037620.1	5.4e-26	78.31	hypothetical protein ES319_D03G087500v1 [Gossypium barbadense]	[more]
TYH87637.1	2.7e-25	77.11	hypothetical protein ES332_D01G131300v1 [Gossypium tomentosum]	[more]
CAB4074464.1	2.7e-25	77.11	unnamed protein product [Lactuca saligna]	[more]
YP_009539687.1	3.5e-25	77.11	photosystem II cytochrome b559 alpha subunit [Dracaena cochinchinensis] >YP_0100...	[more]

BLAST of MELO3C027462 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q70XY9	1.3e-27	75.90	Cytochrome b559 subunit alpha OS=Amborella trichopoda OX=13333 GN=psbE PE=3 SV=3	[more]
P56779	1.3e-27	75.90	Cytochrome b559 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=psbE PE=1 SV=4	[more]
P59702	1.3e-27	75.90	Cytochrome b559 subunit alpha OS=Atropa belladonna OX=33113 GN=psbE PE=3 SV=3	[more]
P69382	1.3e-27	75.90	Cytochrome b559 subunit alpha OS=Beta vulgaris OX=161934 GN=psbE PE=3 SV=2	[more]
Q4VZH5	1.3e-27	75.90	Cytochrome b559 subunit alpha OS=Cucumis sativus OX=3659 GN=psbE PE=3 SV=1	[more]

BLAST of MELO3C027462 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5J5S2D3	2.6e-26	78.31	Cytochrome b559 subunit alpha OS=Gossypium barbadense OX=3634 GN=ES319_D03G08750...	[more]
A0A5D2D469	2.6e-26	78.31	Cytochrome b559 subunit alpha OS=Gossypium darwinii OX=34276 GN=ES288_D03G094300...	[more]
A0A5D2M8G7	1.3e-25	77.11	Cytochrome b559 subunit alpha OS=Gossypium tomentosum OX=34277 GN=ES332_D01G1313...	[more]
A0A6S7L5K1	1.3e-25	77.11	Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS3292 PE=3 SV=1	[more]
A0A7S8CUW5	1.7e-25	77.11	Photosystem II cytochrome b559 alpha subunit OS=Dracaena fragrans OX=231032 GN=p...	[more]

BLAST of MELO3C027462 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00580.1	3.6e-28	74.70	photosystem II reaction center protein E	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013082	Photosystem II cytochrome b559, alpha subunit, lumenal region	PFAM	PF00284	Cytochrom_B559a	coord: 42..79 e-value: 4.3E-10 score: 39.2
IPR037025	Photosystem II cytochrome b559, alpha subunit superfamily	GENE3D	1.20.5.860	Photosystem II cytochrome b559, alpha subunit	coord: 1..83 e-value: 2.4E-34 score: 119.0
IPR006217	Photosystem II cytochrome b559, alpha subunit	PIRSF	PIRSF000036	Cytochrome_PsbE	coord: 1..83 e-value: 1.6E-36 score: 122.0
IPR006217	Photosystem II cytochrome b559, alpha subunit	TIGRFAM	TIGR01332	TIGR01332	coord: 3..80 e-value: 4.8E-31 score: 104.6
None	No IPR available	PANTHER	PTHR33391	CYTOCHROME B559 SUBUNIT BETA-RELATED	coord: 1..83
None	No IPR available	SUPERFAMILY	161045	Cytochrome b559 subunits	coord: 4..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027462.1	MELO3C027462.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding