MELO3C027431 (gene) Melon (DHL92) v4

Overview
NameMELO3C027431
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Locationchr01: 27329203 .. 27329477 (+)
RNA-Seq ExpressionMELO3C027431
SyntenyMELO3C027431
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCAACAACTCAGTTTTCGTATCGCGGGGTAAAGAGTGATCCTGCGAAGGTTTCTTTGTTTTGTATTGGTCATAAGTGCTTCCAGCTTCGAGACTCATACTCCGATGACTTCAGTTTACATTCCTGGCATTGTCCATCACTCGTTTTCCCAAGGTATAGGTTGGAAAGCGAGCTCGTTGGAGGGAGGACTAAGGTGCAACACAAAACGATAGACAAGATGGCCAAGCTCCACCAACGAGTGGCGAACGCTCGTCCGGTGTTAGAGACCACTAA

mRNA sequence

ATTTCAACAACTCAGTTTTCGTATCGCGGGGTAAAGAGTGATCCTGCGAAGGTTTCTTTGTTTTGTATTGGTCATAAGTGCTTCCAGCTTCGAGACTCATACTCCGATGACTTCAGTTTACATTCCTGGCATTGTCCATCACTCGTTTTCCCAAGGTATAGGTTGGAAAGCGAGCTCGTTGGAGGGAGGACTAAGGTGCAACACAAAACGATAGACAAGATGGCCAAGCTCCACCAACGAGTGGCGAACGCTCGTCCGGTGTTAGAGACCACTAA

Coding sequence (CDS)

ATTTCAACAACTCAGTTTTCGTATCGCGGGGTAAAGAGTGATCCTGCGAAGGTTTCTTTGTTTTGTATTGGTCATAAGTGCTTCCAGCTTCGAGACTCATACTCCGATGACTTCAGTTTACATTCCTGGCATTGTCCATCACTCGTTTTCCCAAGGTATAGGTTGGAAAGCGAGCTCGTTGGAGGGAGGACTAAGGTGCAACACAAAACGATAGACAAGATGGCCAAGCTCCACCAACGAGTGGCGAACGCTCGTCCGGTGTTAGAGACCACT

Protein sequence

ISTTQFSYRGVKSDPAKVSLFCIGHKCFQLRDSYSDDFSLHSWHCPSLVFPRYRLESELVGGRTKVQHKTIDKMAKLHQRVANARPVLETT
Homology
BLAST of MELO3C027431 vs. NCBI nr
Match: KAA0065520.1 (retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-13
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 0

Query: 20   LFCIGHKCFQLRDSYSDDFSLHSWHCPSLVFPRYRLESELVGGRTKVQHKTIDKMA 76
            L C+GHK F+L+DSYS+DFSLHSW CPS VF +YR  S+LV GRTKVQ  TI+KMA
Sbjct: 1284 LCCVGHKHFELQDSYSEDFSLHSWQCPSPVFQKYRTGSKLVRGRTKVQLVTIEKMA 1339

BLAST of MELO3C027431 vs. NCBI nr
Match: KAA0051945.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12215.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 7.0e-11
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 4  TQFSYRGVKSDPAKVSLFCIGHKCFQLRDSYSDDFSLHSWHCPSLVFPRYRLESELVGGR 63
          T+F Y   KS P+ V LF IGHKCF+L DSY ++F+LHSWH PS ++ +YR  SEL GGR
Sbjct: 28 TKFLYLEAKSGPSTVPLFRIGHKCFELWDSYFENFNLHSWHWPSHIYSKYRSGSEL-GGR 87

Query: 64 TK 66
           K
Sbjct: 88 KK 88

BLAST of MELO3C027431 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 6.2e-07
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 28  FQLRDSYSDDFSLHSWHCPSLVFPRYRLESELVGGRTKVQHKTIDKMA 76
           F+L+DS S DFSLHS H PSLVF +YR   ELV  RTKVQH  I+KMA
Sbjct: 374 FELQDSSSKDFSLHSLHRPSLVFAKYRSGCELVWERTKVQHGAIEKMA 421

BLAST of MELO3C027431 vs. NCBI nr
Match: KAA0047409.1 (retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa] >TYK14084.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-06
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 0

Query: 31  RDSYSDDFSLHSWHCPSLVFPRYRLESELVGGRTKVQHKTIDKM 75
           ++SYS+DFSLHSW+CPSLV  +Y   +EL GGRTKVQ   I+KM
Sbjct: 88  QNSYSEDFSLHSWNCPSLVVLKYSSRNELGGGRTKVQPAKIEKM 131

BLAST of MELO3C027431 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 5.8e-05
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 37 DFSLHSWHCPSLVFPRYRLESELVGGRTKVQHKTIDKMA 76
          DFSLH WH  S +FPRYR  SELVG RTKVQ  TI+K+A
Sbjct: 21 DFSLHCWHHSSPIFPRYRSGSELVGRRTKVQSGTIEKIA 59

BLAST of MELO3C027431 vs. ExPASy TrEMBL
Match: A0A5A7VEB1 (Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00210 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.6e-14
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 0

Query: 20   LFCIGHKCFQLRDSYSDDFSLHSWHCPSLVFPRYRLESELVGGRTKVQHKTIDKMA 76
            L C+GHK F+L+DSYS+DFSLHSW CPS VF +YR  S+LV GRTKVQ  TI+KMA
Sbjct: 1284 LCCVGHKHFELQDSYSEDFSLHSWQCPSPVFQKYRTGSKLVRGRTKVQLVTIEKMA 1339

BLAST of MELO3C027431 vs. ExPASy TrEMBL
Match: A0A5D3CKZ2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00020 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.4e-11
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 4  TQFSYRGVKSDPAKVSLFCIGHKCFQLRDSYSDDFSLHSWHCPSLVFPRYRLESELVGGR 63
          T+F Y   KS P+ V LF IGHKCF+L DSY ++F+LHSWH PS ++ +YR  SEL GGR
Sbjct: 28 TKFLYLEAKSGPSTVPLFRIGHKCFELWDSYFENFNLHSWHWPSHIYSKYRSGSEL-GGR 87

Query: 64 TK 66
           K
Sbjct: 88 KK 88

BLAST of MELO3C027431 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.0e-07
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 28  FQLRDSYSDDFSLHSWHCPSLVFPRYRLESELVGGRTKVQHKTIDKMA 76
           F+L+DS S DFSLHS H PSLVF +YR   ELV  RTKVQH  I+KMA
Sbjct: 374 FELQDSSSKDFSLHSLHRPSLVFAKYRSGCELVWERTKVQHGAIEKMA 421

BLAST of MELO3C027431 vs. ExPASy TrEMBL
Match: A0A5A7U1Q6 (Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00650 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.7e-07
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 0

Query: 31  RDSYSDDFSLHSWHCPSLVFPRYRLESELVGGRTKVQHKTIDKM 75
           ++SYS+DFSLHSW+CPSLV  +Y   +EL GGRTKVQ   I+KM
Sbjct: 88  QNSYSEDFSLHSWNCPSLVVLKYSSRNELGGGRTKVQPAKIEKM 131

BLAST of MELO3C027431 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-05
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 37 DFSLHSWHCPSLVFPRYRLESELVGGRTKVQHKTIDKMA 76
          DFSLH WH  S +FPRYR  SELVG RTKVQ  TI+K+A
Sbjct: 21 DFSLHCWHHSSPIFPRYRSGSELVGRRTKVQSGTIEKIA 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0065520.12.0e-1369.64retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo v... [more]
KAA0051945.17.0e-1158.06pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12215... [more]
KAA0065516.16.2e-0766.67uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa][more]
KAA0047409.11.4e-0663.64retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa... [more]
TYJ98800.15.8e-0569.23uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VEB19.6e-1469.64Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo... [more]
A0A5D3CKZ23.4e-1158.06Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7VGQ53.0e-0766.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U1Q66.7e-0763.64Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. maku... [more]
A0A5D3BG852.8e-0569.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027431.1MELO3C027431.1mRNA