MELO3C027298 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027298
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	TrmE-type G domain-containing protein
Location	chr04: 14641579 .. 14642468 (-)
RNA-Seq Expression	MELO3C027298
Synteny	MELO3C027298

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTGCTGTGGTTTCAGCACTCTTGCTGTGTTTAGTAAATTCGATGGATGGACTGAAGAAGATACCATACTTCTCAATAGTATACTTTCAAAAAAGGTTTAGCAAAATTCGACTACCTGTTTCCTGCTATGAATTATTCTTTAATGATTTACTGGTCAAAATCAAAGCTCCACCACCATAAAGATTATTAAAAAAATGGTGTTTATTGATTATTATTATTTCTTTTAAACGCTTTGAAAATGCAGAAATCAGATGAATCATGCACTCATATACTTCTTGTCGTAAACAAGATATACCGTGCTCCATCTCCAAACATGGATGCAATGAGTATAAATCGTGATTCTTTCGGTAAACAAGTTTTTACCTGTGCTGCCACTGGACAAGGAATACAGAATTTGGAGATGGCAATATCAGAGCTGGTGGGACTCAACAAAACTCTTGCAAGTGGTCGTAGATGGACGGTAAACCAAGTATAACTAACCTATTTCCCTCTTCCCCCTACCAAATAAGAATCCGGTTCTTTGATGGTAAAACTTGGTATAACACCATTTTTTGTCTTAGTAAATAGAAATAGTAATGAGCAATGTAGAACTCATGGATTGGTGTTGTTTTGGTTACAATCAGAGACAATGTGAGTAGCTTATTAGAACCAAGGAGGCATTTACAAGATTGAAATCTTCCATTGAAGACGAGTTGCCCCCTGACTTTTGGACAATGGATTTGAGGGATGTTGTATTAGCTCTTGGGGAAATTTGTGGTGAGGAAATCTTCCAATATTTTTGGCAAGTTCTGTATTGGTAAGTAGATAGTATCATCAATATATGTACGATTTCATAGTATCATCAATAGTATCGTCAATATTTTTGGCAAGTTCTATATTGGTAAGTAG

mRNA sequence

CTCTTGCTGTGGTTTCAGCACTCTTGCTGTGTTTAGTAAATTCGATGGATGGACTGAAGAAGATACCATACTTCTCAATAGTATACTTTCAAAAAAGAAATCAGATGAATCATGCACTCATATACTTCTTGTCGTAAACAAGATATACCGTGCTCCATCTCCAAACATGGATGCAATGAGTATAAATCGTGATTCTTTCGGTAAACAAGTTTTTACCTGTGCTGCCACTGGACAAGGAATACAGAATTTGGAGATGGCAATATCAGAGCTGGTGGGACTCAACAAAACTCTTGCAAGTGGTCGTAGATGGACGGTAAACCAAAGACAATGTGAGTAGCTTATTAGAACCAAGGAGGCATTTACAAGATTGAAATCTTCCATTGAAGACGAGTTGCCCCCTGACTTTTGGACAATGGATTTGAGGGATGTTGTATTAGCTCTTGGGGAAATTTGTGGTGAGGAAATCTTCCAATATTTTTGTCAATATTTTTGGCAAGTTCTATATTGGTAAGTAG

Coding sequence (CDS)

TCTTGCTGTGGTTTCAGCACTCTTGCTGTGTTTAGTAAATTCGATGGATGGACTGAAGAAGATACCATACTTCTCAATAGTATACTTTCAAAAAAGAAATCAGATGAATCATGCACTCATATACTTCTTGTCGTAAACAAGATATACCGTGCTCCATCTCCAAACATGGATGCAATGAGTATAAATCGTGATTCTTTCGGTAAACAAGTTTTTACCTGTGCTGCCACTGGACAAGGAATACAGAATTTGGAGATGGCAATATCAGAGCTGGTGGGACTCAACAAAACTCTTGCAAGTGGTCGTAGATGGACGGTAAACCAAAGACAATGTGAGTAG

Protein sequence

SCCGFSTLAVFSKFDGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMSINRDSFGKQVFTCAATGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE

Homology

[Close]

BLAST of MELO3C027298 vs. NCBI nr
Match: KAA0038141.1 (tRNA modification GTPase MnmE [Cucumis melo var. makuwa] >TYK20466.1 tRNA modification GTPase MnmE [Cucumis melo var. makuwa])

HSP 1 Score: 212.6 bits (540), Expect = 1.7e-51
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   SCCGFSTLAVFSKFDGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMS 60
           SCCGFSTLAVFSKFDGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMS
Sbjct: 181 SCCGFSTLAVFSKFDGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMS 240

Query: 61  INRDSFGKQVFTCAATGQGIQNLEMAISELVGLNKTLASGRRWTV 106
           INRDSFGKQVFTCAATGQGIQNLEMAISELVGLNKTLASGRRWT+
Sbjct: 241 INRDSFGKQVFTCAATGQGIQNLEMAISELVGLNKTLASGRRWTL 285

[Close]

BLAST of MELO3C027298 vs. NCBI nr
Match: XP_008460482.1 (PREDICTED: tRNA modification GTPase MnmE [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 1.6e-41
Identity = 90/97 (92.78%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 15  DGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMSINRDSFGKQVFTCA 74
           DGWTEEDTILLN ILSKKKSDESC  ILLVVNKI  APSPNMDAMSINRDSF KQVFTCA
Sbjct: 405 DGWTEEDTILLNRILSKKKSDESCIPILLVVNKIDCAPSPNMDAMSINRDSFSKQVFTCA 464

Query: 75  ATGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE 112
            TGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE
Sbjct: 465 VTGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE 501

[Close]

BLAST of MELO3C027298 vs. NCBI nr
Match: KAA0067418.1 (tRNA modification GTPase MnmE [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 1.6e-41
Identity = 90/97 (92.78%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 15  DGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMSINRDSFGKQVFTCA 74
           DGWTEEDTILLN ILSKKKSDESC  ILLVVNKI  APSPNMDAMSINRDSF KQVFTCA
Sbjct: 627 DGWTEEDTILLNRILSKKKSDESCIPILLVVNKIDCAPSPNMDAMSINRDSFSKQVFTCA 686

Query: 75  ATGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE 112
            TGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE
Sbjct: 687 VTGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE 723

[Close]

BLAST of MELO3C027298 vs. NCBI nr
Match: TYK26555.1 (tRNA modification GTPase MnmE [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 1.6e-41
Identity = 90/97 (92.78%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 15  DGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMSINRDSFGKQVFTCA 74
           DGWTEEDTILLN ILSKKKSDESC  ILLVVNKI  APSPNMDAMSINRDSF KQVFTCA
Sbjct: 405 DGWTEEDTILLNRILSKKKSDESCIPILLVVNKIDCAPSPNMDAMSINRDSFSKQVFTCA 464

Query: 75  ATGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE 112
            TGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE
Sbjct: 465 VTGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE 501

[Close]

BLAST of MELO3C027298 vs. NCBI nr
Match: XP_004140317.1 (uncharacterized protein LOC101217353 isoform X1 [Cucumis sativus] >KGN51006.1 hypothetical protein Csa_007730 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 88/103 (85.44%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 8   LAVFSKFDGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMSINRDSFG 67
           +   S  DGWT EDTILLN ILSKKKSDESCT ILLV+NKI  APSP MDAMSINRDSF 
Sbjct: 398 IMAISALDGWTAEDTILLNRILSKKKSDESCTPILLVINKIDCAPSPKMDAMSINRDSFS 457

Query: 68  KQVFTCAATGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQC 111
           KQVFTCA TGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQC
Sbjct: 458 KQVFTCAVTGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQC 500

[Close]

BLAST of MELO3C027298 vs. ExPASy Swiss-Prot
Match: Q8KPU2 (tRNA modification GTPase MnmE OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=mnmE PE=3 SV=3)

HSP 1 Score: 51.6 bits (122), Expect = 6.6e-06
Identity = 31/94 (32.98%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 16  GWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMSINRDSFGKQVFTCAA 75
           GW+ ED  +  ++  +         ILLV+NK  R       A+++ +  F   V+T AA
Sbjct: 315 GWSAEDQTIWEAVSDRP--------ILLVINKRDRLSEAERHAIALPQQEFKAIVWTAAA 374

Query: 76  TGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQ 110
             QGI++LE AI   VG     ++   W +NQRQ
Sbjct: 375 QQQGIEDLEAAILAAVGTGDLTSANWDWALNQRQ 400

[Close]

BLAST of MELO3C027298 vs. ExPASy Swiss-Prot
Match: Q5N638 (tRNA modification GTPase MnmE OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=mnmE PE=3 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 1.9e-05
Identity = 30/94 (31.91%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 16  GWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMSINRDSFGKQVFTCAA 75
           GW+ ED  +  ++  +         ILLV+NK  R       A+++ +  F   V+T AA
Sbjct: 315 GWSAEDQTIWEAVSDRP--------ILLVINKRDRLSEAERHAIALPQQEFKAIVWTAAA 374

Query: 76  TGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQ 110
             +GI++LE AI   VG     ++   W +NQRQ
Sbjct: 375 QQKGIEDLEAAILAAVGTGDLTSANWDWALNQRQ 400

[Close]

BLAST of MELO3C027298 vs. ExPASy TrEMBL
Match: A0A5D3DA72 (Adenylyl-sulfate kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00340 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 8.3e-52
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   SCCGFSTLAVFSKFDGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMS 60
           SCCGFSTLAVFSKFDGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMS
Sbjct: 181 SCCGFSTLAVFSKFDGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMS 240

Query: 61  INRDSFGKQVFTCAATGQGIQNLEMAISELVGLNKTLASGRRWTV 106
           INRDSFGKQVFTCAATGQGIQNLEMAISELVGLNKTLASGRRWT+
Sbjct: 241 INRDSFGKQVFTCAATGQGIQNLEMAISELVGLNKTLASGRRWTL 285

[Close]

BLAST of MELO3C027298 vs. ExPASy TrEMBL
Match: A0A5A7VI58 (tRNA modification GTPase MnmE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G00780 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.8e-42
Identity = 90/97 (92.78%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 15  DGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMSINRDSFGKQVFTCA 74
           DGWTEEDTILLN ILSKKKSDESC  ILLVVNKI  APSPNMDAMSINRDSF KQVFTCA
Sbjct: 627 DGWTEEDTILLNRILSKKKSDESCIPILLVVNKIDCAPSPNMDAMSINRDSFSKQVFTCA 686

Query: 75  ATGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE 112
            TGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE
Sbjct: 687 VTGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE 723

[Close]

BLAST of MELO3C027298 vs. ExPASy TrEMBL
Match: A0A5D3DT93 (tRNA modification GTPase MnmE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001540 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.8e-42
Identity = 90/97 (92.78%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 15  DGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMSINRDSFGKQVFTCA 74
           DGWTEEDTILLN ILSKKKSDESC  ILLVVNKI  APSPNMDAMSINRDSF KQVFTCA
Sbjct: 405 DGWTEEDTILLNRILSKKKSDESCIPILLVVNKIDCAPSPNMDAMSINRDSFSKQVFTCA 464

Query: 75  ATGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE 112
            TGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE
Sbjct: 465 VTGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE 501

[Close]

BLAST of MELO3C027298 vs. ExPASy TrEMBL
Match: A0A1S3CCP4 (tRNA modification GTPase MnmE OS=Cucumis melo OX=3656 GN=LOC103499287 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.8e-42
Identity = 90/97 (92.78%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 15  DGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMSINRDSFGKQVFTCA 74
           DGWTEEDTILLN ILSKKKSDESC  ILLVVNKI  APSPNMDAMSINRDSF KQVFTCA
Sbjct: 405 DGWTEEDTILLNRILSKKKSDESCIPILLVVNKIDCAPSPNMDAMSINRDSFSKQVFTCA 464

Query: 75  ATGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE 112
            TGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE
Sbjct: 465 VTGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE 501

[Close]

BLAST of MELO3C027298 vs. ExPASy TrEMBL
Match: A0A0A0KTK4 (TrmE-type G domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G396040 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.6e-41
Identity = 88/103 (85.44%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 8   LAVFSKFDGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMSINRDSFG 67
           +   S  DGWT EDTILLN ILSKKKSDESCT ILLV+NKI  APSP MDAMSINRDSF 
Sbjct: 398 IMAISALDGWTAEDTILLNRILSKKKSDESCTPILLVINKIDCAPSPKMDAMSINRDSFS 457

Query: 68  KQVFTCAATGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQC 111
           KQVFTCA TGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQC
Sbjct: 458 KQVFTCAVTGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQC 500

[Close]

BLAST of MELO3C027298 vs. TAIR 10
Match: AT1G78010.1 (tRNA modification GTPase, putative )

HSP 1 Score: 87.4 bits (215), Expect = 7.7e-18
Identity = 50/103 (48.54%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 12  SKFDGWTEEDTILLNSILSKKKSDESCTHILLVVNKIYRAPSPNMDAMSINR---DSFGK 71
           S  +GWTEEDT LL  I S K        ++LV+NKI  AP  + D +   R   + F K
Sbjct: 405 SAVEGWTEEDTELLRKIQSDKP-------MILVMNKIDCAPPGSCDQLEDQRKKEEVFHK 464

Query: 72  QVFTCAATGQGIQNLEMAISELVGLNKTLASGRRWTVNQRQCE 112
            VFT A TGQGI+ LE AI E++GL++    G +WTVNQRQCE
Sbjct: 465 SVFTSAVTGQGIEELEDAILEILGLDRVPTGGHQWTVNQRQCE 500

The following BLAST results are available for this feature:

BLAST of MELO3C027298 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038141.1	1.7e-51	99.05	tRNA modification GTPase MnmE [Cucumis melo var. makuwa] >TYK20466.1 tRNA modifi...	[more]
XP_008460482.1	1.6e-41	92.78	PREDICTED: tRNA modification GTPase MnmE [Cucumis melo]	[more]
KAA0067418.1	1.6e-41	92.78	tRNA modification GTPase MnmE [Cucumis melo var. makuwa]	[more]
TYK26555.1	1.6e-41	92.78	tRNA modification GTPase MnmE [Cucumis melo var. makuwa]	[more]
XP_004140317.1	1.4e-40	85.44	uncharacterized protein LOC101217353 isoform X1 [Cucumis sativus] >KGN51006.1 hy...	[more]

BLAST of MELO3C027298 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8KPU2	6.6e-06	32.98	tRNA modification GTPase MnmE OS=Synechococcus elongatus (strain PCC 7942 / FACH...	[more]
Q5N638	1.9e-05	31.91	tRNA modification GTPase MnmE OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301...	[more]

BLAST of MELO3C027298 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DA72	8.3e-52	99.05	Adenylyl-sulfate kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VI58	7.8e-42	92.78	tRNA modification GTPase MnmE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3DT93	7.8e-42	92.78	tRNA modification GTPase MnmE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CCP4	7.8e-42	92.78	tRNA modification GTPase MnmE OS=Cucumis melo OX=3656 GN=LOC103499287 PE=3 SV=1	[more]
A0A0A0KTK4	6.6e-41	85.44	TrmE-type G domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G396040...	[more]

BLAST of MELO3C027298 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78010.1	7.7e-18	48.54	tRNA modification GTPase, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 6..96 e-value: 1.3E-5 score: 26.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 10..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027298.1	MELO3C027298.1	mRNA