MELO3C027211 (gene) Melon (DHL92) v4

Overview
NameMELO3C027211
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionSmall ribosomal subunit protein S13
Locationchr09: 11163337 .. 11163521 (-)
RNA-Seq ExpressionMELO3C027211
SyntenyMELO3C027211
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTCCCGATAGCAAACCACTCAAATTTGCACTTCAGTGCATCAATGGAATTGGCCAAGCGAGAGCAAACCAAGTTCTTGCCCAGCTTCCTTGGAAAACAAGCTTGCCAAAGATATTACTAAAAGAGAGCTCCTTGTTCTTGCAGACCAGATTTCCAAGTACACGGTTGGACATGAGCTG

mRNA sequence

ATGAAGATTCCCGATAGCAAACCACTCAAATTTGCACTTCAGTGCATCAATGGAATTGGCCAAGCGAGAGCAAACCAAGTTCTTGCCCAGCTTCCTTGGAAAACAAGCTTGCCAAAGATATTACTAAAAGAGAGCTCCTTGTTCTTGCAGACCAGATTTCCAAGTACACGGTTGGACATGAGCTG

Coding sequence (CDS)

ATGAAGATTCCCGATAGCAAACCACTCAAATTTGCACTTCAGTGCATCAATGGAATTGGCCAAGCGAGAGCAAACCAAGTTCTTGCCCAGCTTCCTTGGAAAACAAGCTTGCCAAAGATATTACTAAAAGAGAGCTCCTTGTTCTTGCAGACCAGATTTCCAAGTACACGGTTGGACATGAGC

Protein sequence

MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDMS
Homology
BLAST of MELO3C027211 vs. NCBI nr
Match: KAA0047526.1 (small ribosomal subunit protein S13 [Cucumis melo var. makuwa] >TYK26495.1 small ribosomal subunit protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 5.7e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1   MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDM 60
           MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDM
Sbjct: 107 MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDM 166

Query: 61  S 62
           S
Sbjct: 167 S 167

BLAST of MELO3C027211 vs. NCBI nr
Match: XP_004140326.1 (small ribosomal subunit protein S13, mitochondrial isoform X1 [Cucumis sativus] >XP_031741498.1 small ribosomal subunit protein S13, mitochondrial-like isoform X1 [Cucumis sativus] >KGN50980.1 hypothetical protein Csa_007892 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL 50
          M+IPDSKPLKFALQ INGIG+ARANQVLAQL  +  L K L K+  +FL
Sbjct: 33 MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFL 81

BLAST of MELO3C027211 vs. NCBI nr
Match: XP_011655183.1 (small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sativus] >XP_011655184.1 small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sativus] >XP_031741499.1 small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sativus] >KAE8652086.1 hypothetical protein Csa_018623 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL 50
          M+IPDSKPLKFALQ INGIG+ARANQVLAQL  +  L K L K+  +FL
Sbjct: 1  MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFL 49

BLAST of MELO3C027211 vs. NCBI nr
Match: XP_022993181.1 (small ribosomal subunit protein S13, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-04
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 1  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL 50
          M+IPD+KPLK+ALQ INGIG++RA QVLA+L  +  L K L K   + L
Sbjct: 33 MEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVL 81

BLAST of MELO3C027211 vs. NCBI nr
Match: XP_022141627.1 (30S ribosomal protein S13, chloroplastic-like [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-04
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 1  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL 50
          M+IPD KPL+FALQ I+GIG++RANQVLA+L     L K L K   + L
Sbjct: 31 MEIPDDKPLRFALQYIDGIGRSRANQVLAELHLGNKLAKDLTKRELVIL 79

BLAST of MELO3C027211 vs. ExPASy TrEMBL
Match: A0A5D3DT03 (Small ribosomal subunit protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00670 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1   MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDM 60
           MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDM
Sbjct: 107 MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFLQTRFPSTRLDM 166

Query: 61  S 62
           S
Sbjct: 167 S 167

BLAST of MELO3C027211 vs. ExPASy TrEMBL
Match: A0A0A0KMX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381850 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.9e-08
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 1  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL 50
          M+IPDSKPLKFALQ INGIG+ARANQVLAQL  +  L K L K+  +FL
Sbjct: 33 MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFL 81

BLAST of MELO3C027211 vs. ExPASy TrEMBL
Match: A0A6J1JVL8 (small ribosomal subunit protein S13, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111489279 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 1  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL 50
          M+IPD+KPLK+ALQ INGIG++RA QVLA+L  +  L K L K   + L
Sbjct: 33 MEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVL 81

BLAST of MELO3C027211 vs. ExPASy TrEMBL
Match: A0A6J1CKC9 (30S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011935 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 1  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL 50
          M+IPD KPL+FALQ I+GIG++RANQVLA+L     L K L K   + L
Sbjct: 31 MEIPDDKPLRFALQYIDGIGRSRANQVLAELHLGNKLAKDLTKRELVIL 79

BLAST of MELO3C027211 vs. ExPASy TrEMBL
Match: A0A6J1FGA3 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445150 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-04
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 1  MKIPDSKPLKFALQCINGIGQARANQVLAQLPWKTSLPKILLKESSLFL 50
          ++IPD+KPLK+ALQ INGIG++RA QVLA+L  +  L K L K   + L
Sbjct: 33 LEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVL 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0047526.15.7e-25100.00small ribosomal subunit protein S13 [Cucumis melo var. makuwa] >TYK26495.1 small... [more]
XP_004140326.11.4e-0769.39small ribosomal subunit protein S13, mitochondrial isoform X1 [Cucumis sativus] ... [more]
XP_011655183.11.4e-0769.39small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sati... [more]
XP_022993181.13.3e-0457.14small ribosomal subunit protein S13, mitochondrial-like [Cucurbita maxima][more]
XP_022141627.13.3e-0457.1430S ribosomal protein S13, chloroplastic-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DT032.8e-25100.00Small ribosomal subunit protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A0A0KMX96.9e-0869.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381850 PE=3 SV=1[more]
A0A6J1JVL81.6e-0457.14small ribosomal subunit protein S13, mitochondrial-like OS=Cucurbita maxima OX=3... [more]
A0A6J1CKC91.6e-0457.1430S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1FGA33.5e-0455.1030S ribosomal protein S13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.50coord: 1..46
e-value: 5.3E-6
score: 28.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C027211.1MELO3C027211.1mRNA