MELO3C027074.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C027074.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Girdin-like
Location	chr05: 23662371 .. 23663618 (+)
RNA-Seq Expression	MELO3C027074.jh1
Synteny	MELO3C027074.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCAACATATCCAAGGAAGGAGGCTTGGTTGTCTTCTTTTGCAAAACTGACTTTTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTAAAGGCGGTGATATATAGATGCGGAGATTTTCATAGTGTGCCTTTGTTGGGACCACGGGGAGGTGTTAACTATACACCATTGTTAGTTTTGCGCCAGGTGTAGCTCAAATAGTTTATACCACCAACTCATAATCTGCAAGAGTCCGAATTTTCATACGATCCTGAAGATTGTCAAGGGAAAAAACGTCAAGCAGTATGCGCATGGAAATCTATAAGGAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTAGTGGGTACGAGGCATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGGAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCAAACAACCAAATCAGTGGATTGAGAAGAGCAAAGAACTAGAAGAGAAAAATCGATTGTTAGAGCAAGAGAACAAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCGACTTATTTGCAAAACGAACTCGAAAAGACTAAGAGTTTCTTAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACTTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGCTTGAAAAATGAGAAGACAACATTACAAGCAACAGTGGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTTTCTCCAGCTTGTCAATGATTTGAATACATCAATTGGAAAACCAGAAACACAAATAATGGATTTGGAAGCACAAATCATTCTTTGCGTCAAACTGTTAATAGCCTACATCTGAAGATGGTCGAGTGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCGCTTCAAAATTCAAGTAAGAGGATAACACAAGAATATGAGTCATTGGATACAGATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACAAGAGATTTCAAGTGCTAGTGGAACGTGTAGATCAGACAATCGAATTTCTCATAATGGTGTTCAAAAGAGCAAATGGTTTTGCAGAATGGGCAGCTGATTTGAGAGTTAATATTTTCTCAATGCAACCTCATGCAATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTGGAACATTTTGATCGTTTTCATTAATTGTTCATTTTGCTATTGA

mRNA sequence

ATCCAACATATCCAAGGAAGGAGGCTTGGTTGTCTTCTTTTGCAAAACTGACTTTTGAAAATGTCATATGGAAGGCTCAATGGATGCCTTTAAAGGCGGTGATATATAGATGCGGAGATTTTCATAGTGTGCCTTTGTTGGGACCACGGGGAGGTGTTAACTATACACCATTGTTAGTTTTGCGCCAGGTGTAGCTCAAATAGTTTATACCACCAACTCATAATCTGCAAGAGTCCGAATTTTCATACGATCCTGAAGATTGTCAAGGGAAAAAACGTCAAGCAGTATGCGCATGGAAATCTATAAGGAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTAGTGGGTACGAGGCATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGGAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCAAACAACCAAATCAGTGGATTGAGAAGAGCAAAGAACTAGAAGAGAAAAATCGATTGTTAGAGCAAGAGAACAAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCGACTTATTTGCAAAACGAACTCGAAAAGACTAAGAGTTTCTTAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACTTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGCTTGAAAAATGAGAAGACAACATTACAAGCAACAGTGGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTTTCTCCAGCTTGTCAATGATTTGAATACATCAATTGGAAAACCAGAAACACAAATAATGGATTTGGAAGCACAAATCATTCTTTGCGTCAAACTGTTAATAGCCTACATCTGAAGATGGTCGAGTGCTCTGAAGAGTATGAGATACTGAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCGCTTCAAAATTCAAGTAAGAGGATAACACAAGAATATGAGTCATTGGATACAGATTACGTGCAAATGAAGGTTGATTATGATCTGCAAACAAGAGATTTCAAGTGCTAGTGGAACGTGTAGATCAGACAATCGAATTTCTCATAATGGTGTTCAAAAGAGCAAATGGTTTTGCAGAATGGGCAGCTGATTTGAGAGTTAATATTTTCTCAATGCAACCTCATGCAATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTGGAACATTTTGATCGTTTTCATTAATTGTTCATTTTGCTATTGA

Coding sequence (CDS)

ATGGATCATGCGACTTATTTGCAAAACGAACTCGAAAAGACTAAGAGTTTCTTAAAAAATCAAGATAAGTTAGAAAAGAATCTTGAGACTTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGCTTGAAAAATGAGAAGACAACATTACAAGCAACAGTGGGGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGAATATTTTCTCCAGCTTGTCAATGATTTGAATACATCAATTGGAAAACCAGAAACACAAATAATGGATTTGGAAGCACAAATCATTCTTTGCGTCAAACTGTTAATAGCCTACATCTGA

Protein sequence

MDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMNKANRSLKNEKTTLQATVGSQDEYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQIILCVKLLIAYI

Homology

[Close]

BLAST of MELO3C027074.jh1 vs. NCBI nr
Match: KAA0055606.1 (girdin-like [Cucumis melo var. makuwa] >TYK24461.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 202 bits (514), Expect = 5.05e-63
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMNKANRSLKNEKTTLQATVGSQD 60
           MDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMNKANRSLKNEKTTLQATVGSQD
Sbjct: 158 MDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMNKANRSLKNEKTTLQATVGSQD 217

Query: 61  EYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQIILCVKLLIAYI 109
           EYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQIILCVKLLIAYI
Sbjct: 218 EYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQIILCVKLLIAYI 266

[Close]

BLAST of MELO3C027074.jh1 vs. NCBI nr
Match: KAA0060422.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (434), Expect = 2.37e-51
Identity = 91/97 (93.81%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMNKANRSLKNEKTTLQATVGSQD 60
          MDHATYLQNELEKTKSFLKNQDKLEK+LETLDKEMRRM+KANRSLKNEKTTLQATVGSQD
Sbjct: 1  MDHATYLQNELEKTKSFLKNQDKLEKDLETLDKEMRRMDKANRSLKNEKTTLQATVGSQD 60

Query: 61 EYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQ 97
          EYIKDLE+GKEYFL+ VNDLNTSIGK ETQIMDLEAQ
Sbjct: 61 EYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQ 97

[Close]

BLAST of MELO3C027074.jh1 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (434), Expect = 3.22e-50
Identity = 90/97 (92.78%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1   MDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMNKANRSLKNEKTTLQATVGSQD 60
           +DHATYLQNELEKTKSFLKNQDKLEK++ETLDKEMRRMNKANR LKNEKTTLQATVGSQD
Sbjct: 95  IDHATYLQNELEKTKSFLKNQDKLEKDIETLDKEMRRMNKANRRLKNEKTTLQATVGSQD 154

Query: 61  EYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQ 97
           EYIKDLE+GKEYFL+LVNDLNTSIGK ETQIMDLEAQ
Sbjct: 155 EYIKDLENGKEYFLELVNDLNTSIGKRETQIMDLEAQ 191

[Close]

BLAST of MELO3C027074.jh1 vs. NCBI nr
Match: KAA0062685.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (430), Expect = 2.29e-49
Identity = 90/97 (92.78%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1   MDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMNKANRSLKNEKTTLQATVGSQD 60
           MDHATYLQNEL+KTKSFLKNQDKLEK+LETLDKEMRRMNKANRSLKNEKTTLQATVGSQ+
Sbjct: 118 MDHATYLQNELKKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTLQATVGSQN 177

Query: 61  EYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQ 97
           EYIKDLE+GKEYFL+ VNDLNTSIGK ETQIMDLEAQ
Sbjct: 178 EYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQ 214

[Close]

BLAST of MELO3C027074.jh1 vs. NCBI nr
Match: KAA0066094.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (436), Expect = 8.04e-49
Identity = 91/97 (93.81%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1   MDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMNKANRSLKNEKTTLQATVGSQD 60
           MDHATYLQNELEKTKSFLKNQDKLEK+LETLDKEMRRMNKANRSLKNEKTTLQAT+GSQD
Sbjct: 364 MDHATYLQNELEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTLQATMGSQD 423

Query: 61  EYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQ 97
           EYIKDLE+GKEYFL+ VNDLNTSIGK ETQIMDLEAQ
Sbjct: 424 EYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQ 460

[Close]

BLAST of MELO3C027074.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DLE9 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00180 PE=4 SV=1)

HSP 1 Score: 202 bits (514), Expect = 2.45e-63
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMNKANRSLKNEKTTLQATVGSQD 60
           MDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMNKANRSLKNEKTTLQATVGSQD
Sbjct: 158 MDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMNKANRSLKNEKTTLQATVGSQD 217

Query: 61  EYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQIILCVKLLIAYI 109
           EYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQIILCVKLLIAYI
Sbjct: 218 EYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQIILCVKLLIAYI 266

[Close]

BLAST of MELO3C027074.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UX37 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE=4 SV=1)

HSP 1 Score: 171 bits (434), Expect = 1.15e-51
Identity = 91/97 (93.81%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMNKANRSLKNEKTTLQATVGSQD 60
          MDHATYLQNELEKTKSFLKNQDKLEK+LETLDKEMRRM+KANRSLKNEKTTLQATVGSQD
Sbjct: 1  MDHATYLQNELEKTKSFLKNQDKLEKDLETLDKEMRRMDKANRSLKNEKTTLQATVGSQD 60

Query: 61 EYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQ 97
          EYIKDLE+GKEYFL+ VNDLNTSIGK ETQIMDLEAQ
Sbjct: 61 EYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQ 97

[Close]

BLAST of MELO3C027074.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 171 bits (434), Expect = 1.56e-50
Identity = 90/97 (92.78%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1   MDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMNKANRSLKNEKTTLQATVGSQD 60
           +DHATYLQNELEKTKSFLKNQDKLEK++ETLDKEMRRMNKANR LKNEKTTLQATVGSQD
Sbjct: 95  IDHATYLQNELEKTKSFLKNQDKLEKDIETLDKEMRRMNKANRRLKNEKTTLQATVGSQD 154

Query: 61  EYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQ 97
           EYIKDLE+GKEYFL+LVNDLNTSIGK ETQIMDLEAQ
Sbjct: 155 EYIKDLENGKEYFLELVNDLNTSIGKRETQIMDLEAQ 191

[Close]

BLAST of MELO3C027074.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V9X6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 PE=4 SV=1)

HSP 1 Score: 170 bits (430), Expect = 1.11e-49
Identity = 90/97 (92.78%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1   MDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMNKANRSLKNEKTTLQATVGSQD 60
           MDHATYLQNEL+KTKSFLKNQDKLEK+LETLDKEMRRMNKANRSLKNEKTTLQATVGSQ+
Sbjct: 118 MDHATYLQNELKKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTLQATVGSQN 177

Query: 61  EYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQ 97
           EYIKDLE+GKEYFL+ VNDLNTSIGK ETQIMDLEAQ
Sbjct: 178 EYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQ 214

[Close]

BLAST of MELO3C027074.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VFL0 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 3.89e-49
Identity = 91/97 (93.81%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1   MDHATYLQNELEKTKSFLKNQDKLEKNLETLDKEMRRMNKANRSLKNEKTTLQATVGSQD 60
           MDHATYLQNELEKTKSFLKNQDKLEK+LETLDKEMRRMNKANRSLKNEKTTLQAT+GSQD
Sbjct: 364 MDHATYLQNELEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTLQATMGSQD 423

Query: 61  EYIKDLESGKEYFLQLVNDLNTSIGKPETQIMDLEAQ 97
           EYIKDLE+GKEYFL+ VNDLNTSIGK ETQIMDLEAQ
Sbjct: 424 EYIKDLENGKEYFLERVNDLNTSIGKRETQIMDLEAQ 460

The following BLAST results are available for this feature:

BLAST of MELO3C027074.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055606.1	5.05e-63	100.00	girdin-like [Cucumis melo var. makuwa] >TYK24461.1 girdin-like [Cucumis melo var...	[more]
KAA0060422.1	2.37e-51	93.81	girdin-like [Cucumis melo var. makuwa]	[more]
TYK23632.1	3.22e-50	92.78	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0062685.1	2.29e-49	92.78	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0066094.1	8.04e-49	93.81	girdin-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C027074.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C027074.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLE9	2.45e-63	100.00	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00180 PE...	[more]
A0A5A7UX37	1.15e-51	93.81	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE...	[more]
A0A5D3DJ95	1.56e-50	92.78	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P...	[more]
A0A5A7V9X6	1.11e-49	92.78	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 P...	[more]
A0A5A7VFL0	3.89e-49	93.81	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=...	[more]

BLAST of MELO3C027074.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027074.jh1.t1	MELO3C027074.jh1.t1	mRNA