MELO3C027032 (gene) Melon (DHL92) v4

Overview


Name	MELO3C027032
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	ATP synthase subunit a
Location	chr08: 25511076 .. 25511290 (+)
RNA-Seq Expression	MELO3C027032
Synteny	MELO3C027032

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGTCATAGTTCAGTAAAGATTTTAAGTGGGTCTGCTTGGACTATGCTATGTATGAATAATCTTCTCTATTTCATAAGAGATCCTGGTCCTTTATTTATTGTTCTTGCATTAACCGGTTTGGAATTAGGTGTAGCTATATCACAAGCTCATCTTTCTACGATCTCAACCTGTATTTACTTGAATGATGCTACAAATCTCCATAAAAAATG

mRNA sequence

ATGGCCGGTCATAGTTCAGTAAAGATTTTAAGTGGGTCTGCTTGGACTATGCTATGTATGAATAATCTTCTCTATTTCATAAGAGATCCTGGTCCTTTATTTATTGTTCTTGCATTAACCGGTTTGGAATTAGGTGTAGCTATATCACAAGCTCATCTTTCTACGATCTCAACCTGTATTTACTTGAATGATGCTACAAATCTCCATAAAAAATG

Coding sequence (CDS)

ATGGCCGGTCATAGTTCAGTAAAGATTTTAAGTGGGTCTGCTTGGACTATGCTATGTATGAATAATCTTCTCTATTTCATAAGAGATCCTGGTCCTTTATTTATTGTTCTTGCATTAACCGGTTTGGAATTAGGTGTAGCTATATCACAAGCTCATCTTTCTACGATCTCAACCTGTATTTACTTGAATGATGCTACAAATCTCCATAAAAAA

Protein sequence

MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCIYLNDATNLHKK

Homology

[Close]

BLAST of MELO3C027032 vs. NCBI nr
Match: AEN56130.1 (ATPase subunit 6 [Cucumis melo subsp. melo] >AZP40292.1 ATPase subunit 6 [Cucumis melo var. momordica])

HSP 1 Score: 133.7 bits (335), Expect = 6.5e-28
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMNNLLYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 196 MAGHSSVKILSGSAWTMLCMNNLLYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 255

Query: 61  YLNDATNLHK 71
           YLNDATNLH+
Sbjct: 256 YLNDATNLHQ 265

[Close]

BLAST of MELO3C027032 vs. NCBI nr
Match: YP_004849344.1 (ATPase subunit 6 [Cucumis sativus] >ADZ10771.1 ATPase subunit 6 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMNN+LYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 187 MAGHSSVKILSGSAWTMLCMNNILYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 246

Query: 61  YLNDATNLH 70
           YLNDATNLH
Sbjct: 247 YLNDATNLH 255

[Close]

BLAST of MELO3C027032 vs. NCBI nr
Match: QTT60947.1 (ATP synthase subunit 6 [Osmanthus fragrans])

HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMN+LLYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 357 MAGHSSVKILSGSAWTMLCMNDLLYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 416

Query: 61  YLNDATNLHK 71
           YLNDATNLH+
Sbjct: 417 YLNDATNLHQ 426

[Close]

BLAST of MELO3C027032 vs. NCBI nr
Match: AUB30701.1 (ATPase subunit 6, partial [Forestiera isabelae])

HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMN+LLYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 189 MAGHSSVKILSGSAWTMLCMNDLLYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 248

Query: 61  YLNDATNLHK 71
           YLNDATNLH+
Sbjct: 249 YLNDATNLHQ 258

[Close]

BLAST of MELO3C027032 vs. NCBI nr
Match: AUB30412.1 (ATPase subunit 6, partial [Chionanthus rupicola] >AUB30419.1 ATPase subunit 6, partial [Olea europaea subsp. cuspidata] >AUB30488.1 ATPase subunit 6, partial [Olea europaea subsp. europaea] >AUB30610.1 ATPase subunit 6, partial [Olea europaea subsp. guanchica] >AUB30663.1 ATPase subunit 6, partial [Olea europaea subsp. laperrinei] >AUB30699.1 ATPase subunit 6, partial [Chionanthus parkinsonii] >AUB30704.1 ATPase subunit 6, partial [Nestegis apetala])

HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMN+LLYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 189 MAGHSSVKILSGSAWTMLCMNDLLYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 248

Query: 61  YLNDATNLHK 71
           YLNDATNLH+
Sbjct: 249 YLNDATNLHQ 258

[Close]

BLAST of MELO3C027032 vs. ExPASy Swiss-Prot
Match: P05499 (ATP synthase subunit a OS=Nicotiana tabacum OX=4097 GN=ATP6 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.7e-27
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSG AWTMLCMN+LLYFI D GPLFIVLALTGLELGVAISQAH+STI  CI
Sbjct: 314 MAGHSSVKILSGFAWTMLCMNDLLYFIGDLGPLFIVLALTGLELGVAISQAHVSTILICI 373

Query: 61  YLNDATNLHK 71
           YLNDA NLH+
Sbjct: 374 YLNDAINLHQ 383

[Close]

BLAST of MELO3C027032 vs. ExPASy Swiss-Prot
Match: Q04654 (ATP synthase subunit a OS=Vicia faba OX=3906 GN=ATP6 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 7.4e-27
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHS VKILSG AWTMLCMN+LLYFI D GPLFIVLALTG ELGVAISQAH+STIS CI
Sbjct: 214 MAGHSLVKILSGFAWTMLCMNDLLYFIGDLGPLFIVLALTGPELGVAISQAHVSTISICI 273

Query: 61  YLNDATNLHK 71
           YLNDATNLH+
Sbjct: 274 YLNDATNLHQ 283

[Close]

BLAST of MELO3C027032 vs. ExPASy Swiss-Prot
Match: P07925 (ATP synthase subunit a OS=Zea mays OX=4577 GN=ATP6 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-26
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSG AWTML +NN+ YF+ D GPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 208 MAGHSSVKILSGFAWTMLFLNNIFYFLGDLGPLFIVLALTGLELGVAISQAHVSTISICI 267

Query: 61  YLNDATNLHK 71
           YLNDATNLH+
Sbjct: 268 YLNDATNLHQ 277

[Close]

BLAST of MELO3C027032 vs. ExPASy Swiss-Prot
Match: P68526 (ATP synthase subunit a OS=Triticum timopheevii OX=4570 GN=ATP6 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.3e-26
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHS VKILSG AWTML +NN+ YFI D GPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 311 MAGHSLVKILSGFAWTMLFLNNIFYFIGDLGPLFIVLALTGLELGVAISQAHVSTISICI 370

Query: 61  YLNDATNLHK 71
           YLNDATNLH+
Sbjct: 371 YLNDATNLHQ 380

[Close]

BLAST of MELO3C027032 vs. ExPASy Swiss-Prot
Match: P68527 (ATP synthase subunit a OS=Triticum aestivum OX=4565 GN=ATP6 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.3e-26
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHS VKILSG AWTML +NN+ YFI D GPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 311 MAGHSLVKILSGFAWTMLFLNNIFYFIGDLGPLFIVLALTGLELGVAISQAHVSTISICI 370

Query: 61  YLNDATNLHK 71
           YLNDATNLH+
Sbjct: 371 YLNDATNLHQ 380

[Close]

BLAST of MELO3C027032 vs. ExPASy TrEMBL
Match: G3EU41 (ATP synthase subunit a OS=Cucumis melo subsp. melo OX=412675 GN=atp6 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.1e-28
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMNNLLYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 196 MAGHSSVKILSGSAWTMLCMNNLLYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 255

Query: 61  YLNDATNLHK 71
           YLNDATNLH+
Sbjct: 256 YLNDATNLHQ 265

[Close]

BLAST of MELO3C027032 vs. ExPASy TrEMBL
Match: A0A3S5HPI7 (ATP synthase subunit a OS=Cucumis melo var. momordica OX=2034244 GN=atp6 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.1e-28
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMNNLLYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 196 MAGHSSVKILSGSAWTMLCMNNLLYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 255

Query: 61  YLNDATNLHK 71
           YLNDATNLH+
Sbjct: 256 YLNDATNLHQ 265

[Close]

BLAST of MELO3C027032 vs. ExPASy TrEMBL
Match: G3EIZ6 (ATP synthase subunit a OS=Cucumis sativus OX=3659 GN=atp6 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.0e-28
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMNN+LYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 187 MAGHSSVKILSGSAWTMLCMNNILYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 246

Query: 61  YLNDATNLH 70
           YLNDATNLH
Sbjct: 247 YLNDATNLH 255

[Close]

BLAST of MELO3C027032 vs. ExPASy TrEMBL
Match: A0A2H4V4G6 (ATP synthase subunit a (Fragment) OS=Olea europaea subsp. europaea OX=158383 GN=atp6 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMN+LLYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 189 MAGHSSVKILSGSAWTMLCMNDLLYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 248

Query: 61  YLNDATNLHK 71
           YLNDATNLH+
Sbjct: 249 YLNDATNLHQ 258

[Close]

BLAST of MELO3C027032 vs. ExPASy TrEMBL
Match: A0A2H4V4Q5 (ATP synthase subunit a (Fragment) OS=Olea europaea subsp. guanchica OX=158384 GN=atp6 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHSSVKILSGSAWTMLCMN+LLYFI DPGPLFIVLALTGLELGVAISQAH+STIS CI
Sbjct: 189 MAGHSSVKILSGSAWTMLCMNDLLYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICI 248

Query: 61  YLNDATNLHK 71
           YLNDATNLH+
Sbjct: 249 YLNDATNLHQ 258

[Close]

BLAST of MELO3C027032 vs. TAIR 10
Match: AT2G07741.1 (ATPase, F0 complex, subunit A protein )

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-23
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHS VKILSG AWTMLCMN++ YFI   GPLFIVLALTGLELGVAI QA++ TI  CI
Sbjct: 317 MAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICI 376

Query: 61  YLNDATNLH 70
           YLNDA NLH
Sbjct: 377 YLNDAINLH 385

[Close]

BLAST of MELO3C027032 vs. TAIR 10
Match: ATMG01170.1 (ATPase, F0 complex, subunit A protein )

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-23
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHS VKILSG AWTMLCMN++ YFI   GPLFIVLALTGLELGVAI QA++ TI  CI
Sbjct: 281 MAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICI 340

Query: 61  YLNDATNLH 70
           YLNDA NLH
Sbjct: 341 YLNDAINLH 349

[Close]

BLAST of MELO3C027032 vs. TAIR 10
Match: ATMG00410.1 (ATPase subunit 6-1 )

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-23
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1   MAGHSSVKILSGSAWTMLCMNNLLYFIRDPGPLFIVLALTGLELGVAISQAHLSTISTCI 60
           MAGHS VKILSG AWTMLCMN++ YFI   GPLFIVLALTGLELGVAI QA++ TI  CI
Sbjct: 317 MAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICI 376

Query: 61  YLNDATNLH 70
           YLNDA NLH
Sbjct: 377 YLNDAINLH 385

The following BLAST results are available for this feature:

BLAST of MELO3C027032 vs. NCBI nr


Match Name	E-value	Identity	Description
AEN56130.1	6.5e-28	94.29	ATPase subunit 6 [Cucumis melo subsp. melo] >AZP40292.1 ATPase subunit 6 [Cucumi...	[more]
YP_004849344.1	1.4e-27	94.20	ATPase subunit 6 [Cucumis sativus] >ADZ10771.1 ATPase subunit 6 [Cucumis sativus...	[more]
QTT60947.1	2.5e-27	92.86	ATP synthase subunit 6 [Osmanthus fragrans]	[more]
AUB30701.1	2.5e-27	92.86	ATPase subunit 6, partial [Forestiera isabelae]	[more]
AUB30412.1	2.5e-27	92.86	ATPase subunit 6, partial [Chionanthus rupicola] >AUB30419.1 ATPase subunit 6, p...	[more]

BLAST of MELO3C027032 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P05499	5.7e-27	87.14	ATP synthase subunit a OS=Nicotiana tabacum OX=4097 GN=ATP6 PE=3 SV=1	[more]
Q04654	7.4e-27	87.14	ATP synthase subunit a OS=Vicia faba OX=3906 GN=ATP6 PE=3 SV=1	[more]
P07925	2.2e-26	84.29	ATP synthase subunit a OS=Zea mays OX=4577 GN=ATP6 PE=3 SV=1	[more]
P68526	6.3e-26	84.29	ATP synthase subunit a OS=Triticum timopheevii OX=4570 GN=ATP6 PE=3 SV=1	[more]
P68527	6.3e-26	84.29	ATP synthase subunit a OS=Triticum aestivum OX=4565 GN=ATP6 PE=3 SV=1	[more]

BLAST of MELO3C027032 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
G3EU41	3.1e-28	94.29	ATP synthase subunit a OS=Cucumis melo subsp. melo OX=412675 GN=atp6 PE=3 SV=1	[more]
A0A3S5HPI7	3.1e-28	94.29	ATP synthase subunit a OS=Cucumis melo var. momordica OX=2034244 GN=atp6 PE=3 SV...	[more]
G3EIZ6	7.0e-28	94.20	ATP synthase subunit a OS=Cucumis sativus OX=3659 GN=atp6 PE=3 SV=1	[more]
A0A2H4V4G6	1.2e-27	92.86	ATP synthase subunit a (Fragment) OS=Olea europaea subsp. europaea OX=158383 GN=...	[more]
A0A2H4V4Q5	1.2e-27	92.86	ATP synthase subunit a (Fragment) OS=Olea europaea subsp. guanchica OX=158384 GN...	[more]

BLAST of MELO3C027032 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07741.1	1.3e-23	78.26	ATPase, F0 complex, subunit A protein	[more]
ATMG01170.1	1.3e-23	78.26	ATPase, F0 complex, subunit A protein	[more]
ATMG00410.1	1.3e-23	78.26	ATPase subunit 6-1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR045083	ATP synthase, F0 complex, subunit A, bacterial/mitochondria	PANTHER	PTHR11410	ATP SYNTHASE SUBUNIT A	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C027032.1	MELO3C027032.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	proton transmembrane transporter activity