MELO3C026956 (gene) Melon (DHL92) v4

Overview
NameMELO3C026956
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr11: 26685879 .. 26688012 (-)
RNA-Seq ExpressionMELO3C026956
SyntenyMELO3C026956
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGCTGAACCCCTTGGATCAACAATTTTCATTTTTCCGTATCAGTTCCCATTGTTTTCTCTTTCAAGAACCTCCTCTTCACTTCATTCGCTTATCACTCTCAACCTCGATTCCTTCGGTAACCTCCGCATCTTCTTCTACTTTTCATCTACGGTTTTCTTTCTACTTTACGTTTTTTTTATTCATTCTCGATTCCTTTGGTGTTGCTTTAATTGCCATTTGTTTCATTCGATTTTAATGTTTTTTCGCCCCATGGATAGATTTTATACCTGCTAAATGTATGAATTTCATGATCAATTATGTGGACAAACTAGGCAAATATTTGTAATTTGCGTTAGTTAGCGGAACAAATTGCTGCTTTGTGTTCGAACATCTGTTCTTTTGTATCTGGATTTGCGTATGTGTCCATGGAGATTGAGGCTTAAGTTTCTCAGTTTAAGATTAGCTGCTGAAGTGCTATGATTTTCTAGTACTTGTAGGTTCTTATTTAGCTTTCTTGGTCATTAATTGAGAATGTATCAGGATTTCAGAAGTTGTCATTTCACATAATCCCATCTCATGTTGGGTAGATTAATTATGGAATTTGTTCATTATGATATCCTCGTTGTGTTCACAATATTCTCGAAGTTAGAGTATCTGACACGCTTGTTTCAAATCATTCATATTGAGGTGTGTGGGCGAGAAATTTTGGTTTGATTTCTGTAAAGCATTTCCTGCTTCTTGTCAACTCAAGGTGGTTGGTGGTTCTTGTATGATAAAGTTCTTTGTAGGTTAAGTTTACAGAATATCAATTGCTATCTGCCTTTCCAGTTATACATCTAAATGTTTCTATTCTTTTTCCTTACTGTCTTGGCTCCTGTGTTTTGTTCTTTCCCTTTTCTTTTTAGCTGATGATATGCACTTGAGGCCTTTTTGTTGAACTTTTCAAAATCAAAATAACTGTTATTTATTAAAGCAAAAAAGAGGTAAGCAATCTAGTAAATTTGCCAATTTATTTGTTTTGTTAACTTGCCCATTGTAGAGTTAGGGTCTGTTTGAATCAACTTTTTAATCGCTTAAAAATACTTCTTTTGTATCAACTTTTTAATCGCCTAAACATACTTCCTTTGCACTTATCAACACTTTTTTTTTAGTACCTAAAAACTCAATCCAAATAGACCTTTATATTGCTATTAGTTTTTGACTCCTTGGTATGCAATCAAATCATCTTTTTGGATGCACTCCTGTAGGGGAATATTTAGTAATTCCTGAACTATTTCTTCTGTATCGAGGATTATTCAAACAAGCAAGAACACTATTTCAATGATTAGGGCCATTTATGTGTAGGGGTGGTAGCTCTTTTTCTCTTTCTTGAAGTTATCCAAATTGAATGATGAATTCATTTCTTTGCCTCTTTGGCCAATAAATTAGAATTACCGTGAAAAGTGAGATTAGATTGGATTACTTGGAAATTGTTACTCATTCTGTAGATTTCTTTTCAGTTCTCTCATAGAAAACTTGATGACACGGCGTCGGAATTTGATTGTTGCCGTTGGGCTGATAGCCTTTGCATCTGCTGGATTAGCATTTCCCTTTTACATGGCGTAAGTAAATGACAGTTTCATTCCTTTAATGAATGGATGAATTTGGAGAAGTTAACATTGAAAAGGATTACGATTCAGGTCTTCAAAAAAACCAGTTATAGATCCGACAAAGCCGCTTCCACCACAGGCCACTTTTCGAGGTCCTTATATCAACACTGGCTCCCGAGACGTTGGACCCGACCATCAAACTTACACCAAGAAGTGATTTCTTTTGAATCTTTGCTTCGTTTCCCAAATGTATCTGTTGTTTTATTTCAATGTAGAAGAAGACTGCGTGAATTCTTGTTCTTCTCATTTATGGAGAAACAATAGAGTAGTTCACTTGATATACAAATCAAATCTTTGTAGATTATAGAAATATTGGTGTCTTATAGAGGCATTGGGGTTTTATTTTCATGGATATATATCAATAAACTTAGGATATTAATGTAAATTAATAATATTATTAGATTAACAATTTTTTTTTTACTTTTTATGAAAGTTAGAGATTTGTCAATTGGACAATGGAAACCAAAAGGTTGGTGAATCATATCAAAATAGAGTTTTTCTGA

mRNA sequence

AGGGCTGAACCCCTTGGATCAACAATTTTCATTTTTCCGTATCAGTTCCCATTGTTTTCTCTTTCAAGAACCTCCTCTTCACTTCATTCGCTTATCACTCTCAACCTCGATTCCTTCGTTCTCTCATAGAAAACTTGATGACACGGCGTCGGAATTTGATTGTTGCCGTTGGGCTGATAGCCTTTGCATCTGCTGGATTAGCATTTCCCTTTTACATGGCGTCTTCAAAAAAACCAGTTATAGATCCGACAAAGCCGCTTCCACCACAGGCCACTTTTCGAGGTCCTTATATCAACACTGGCTCCCGAGACGTTGGACCCGACCATCAAACTTACACCAAGAAGTGATTTCTTTTGAATCTTTGCTTCGTTTCCCAAATGTATCTGTTGTTTTATTTCAATGTAGAAGAAGACTGCGTGAATTCTTGTTCTTCTCATTTATGGAGAAACAATAGAGTAGTTCACTTGATATACAAATCAAATCTTTGTAGATTATAGAAATATTGGTGTCTTATAGAGGCATTGGGGTTTTATTTTCATGGATATATATCAATAAACTTAGGATATTAATGTAAATTAATAATATTATTAGATTAACAATTTTTTTTTTACTTTTTATGAAAGTTAGAGATTTGTCAATTGGACAATGGAAACCAAAAGGTTGGTGAATCATATCAAAATAGAGTTTTTCTGA

Coding sequence (CDS)

GGGCTGAACCCCTTGGATCAACAATTTTCATTTTTCCGTATCAGTTCCCATTGTTTTCTCTTTCAAGAACCTCCTCTTCACTTCATTCGCTTATCACTCTCAACCTCGATTCCTTCGTTCTCTCATAGAAAACTTGATGACACGGCGTCGGAATTTGATTGTTGCCGTTGGGCTGATAGCCTTTGCATCTGCTGGATTAGCATTTCCCTTTTACATGGCGTCTTCAAAAAAACCAGTTATAGATCCGACAAAGCCGCTTCCACCACAGGCCACTTTTCGAGGTCCTTATATCAACACTGGCTCCCGAGACGTTGGACCCGACCATCAAACTTACACCAAGAAGTGATTTCTTTTGAATCTTTGCTTCGTTTCCCAAATGTATCTGTTGTTTTATTTCAATGTAGAAGAAGACTGCGTGAATTCTTGTTCTTCTCATTTATGGAGAAACAATAG

Protein sequence

GLNPLDQQFSFFRISSHCFLFQEPPLHFIRLSLSTSIPSFSHRKLDDTASEFDCCRWADSLCICWISISLLHGVFKKTSYRSDKAASTTGHFSRSLYQHWLPRRWTRPSNLHQEVISFESLLRFPNVSVVLFQCRRRLREFLFFSFMEKQ
Homology
[Close]
BLAST of MELO3C026956 vs. NCBI nr
Match: XP_023534104.1 (uncharacterized protein LOC111795764 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-09
Identity = 34/62 (54.84%), Postives = 38/62 (61.29%), Query Frame = 0 

Query: 55  CRWADSLCICWISISLLHGVFKKTSYRSDKAASTTGHFSRSLYQHWLPRRWTRPSNLHQE 114
           C W DSLCICW+SISL HG F+K S    K             +HW PRRWTRPSNL +E
Sbjct: 43  CHWIDSLCICWLSISLEHGFFQKASIDPAKPLPPQA-------KHWFPRRWTRPSNLLKE 97

Query: 115 VI 117
           VI
Sbjct: 103 VI 97

[Close]
BLAST of MELO3C026956 vs. NCBI nr
Match: XP_023534103.1 (uncharacterized protein LOC111795764 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-07
Identity = 34/68 (50.00%), Postives = 38/68 (55.88%), Query Frame = 0 

Query: 55  CRWADSLCICWISISLLHG------VFKKTSYRSDKAASTTGHFSRSLYQHWLPRRWTRP 114
           C W DSLCICW+SISL HG       F+K S    K             +HW PRRWTRP
Sbjct: 43  CHWIDSLCICWLSISLEHGERFIIQFFQKASIDPAKPLPPQA-------KHWFPRRWTRP 102

Query: 115 SNLHQEVI 117
           SNL +EVI
Sbjct: 103 SNLLKEVI 103

[Close]
BLAST of MELO3C026956 vs. NCBI nr
Match: KCW87453.1 (hypothetical protein EUGRSUZ_B03922 [Eucalyptus grandis])

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-05
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 41  SHRKLDDTASEFDCCRWADSLCICWISISLLHGVFKKTSYRSD---KAASTTGHFSRSLY 100
           S   L+D ++++ CC W+ S C C + IS+LHGV   +S   D   KAA T+G+FSR+L+
Sbjct: 48  SSHNLNDPSTQYHCCIWSSSFCCCRLGISILHGVQVVSSESCDRCIKAAPTSGNFSRALH 107

[Close]
BLAST of MELO3C026956 vs. ExPASy TrEMBL
Match: A0A0A0KDG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148310 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 37 IPSFSHRKLDDTASEFDCCRWADSLCICWISISLLHGVFKKTSYRSDK 85
          IPSF+HRKLDDTASEFDCCRWADSLCICWISISLLHGV  +  +RS K
Sbjct: 49 IPSFTHRKLDDTASEFDCCRWADSLCICWISISLLHGV--RLRFRSSK 94

[Close]
BLAST of MELO3C026956 vs. ExPASy TrEMBL
Match: A0A059D9R9 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03922 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-05
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 41  SHRKLDDTASEFDCCRWADSLCICWISISLLHGVFKKTSYRSD---KAASTTGHFSRSLY 100
           S   L+D ++++ CC W+ S C C + IS+LHGV   +S   D   KAA T+G+FSR+L+
Sbjct: 48  SSHNLNDPSTQYHCCIWSSSFCCCRLGISILHGVQVVSSESCDRCIKAAPTSGNFSRALH 107

The following BLAST results are available for this feature:
BLAST of MELO3C026956 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C026956 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023534104.13.7e-0954.84uncharacterized protein LOC111795764 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023534103.13.5e-0750.00uncharacterized protein LOC111795764 isoform X1 [Cucurbita pepo subsp. pepo][more]
KCW87453.15.6e-0543.55hypothetical protein EUGRSUZ_B03922 [Eucalyptus grandis][more]
BLAST of MELO3C026956 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDG02.4e-1483.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148310 PE=4 SV=1[more]
A0A059D9R92.7e-0543.55Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03922 PE=4 SV... [more]
BLAST of MELO3C026956 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026956.1MELO3C026956.1mRNA