MELO3C026843 (gene) Melon (DHL92) v4

Overview
NameMELO3C026843
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr12: 3293607 .. 3293942 (+)
RNA-Seq ExpressionMELO3C026843
SyntenyMELO3C026843
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTCTTCCTCTTCTTCTTCTTCTCTCTTCTTCTTCCGCCATGGCAGCAGCTTCTTCCACAGCTTCAAAGGCGAAGATCTCTACCCTCCCACCAAAGCGCGGTCGTATCAAAGCTCAAATTTTTGAGAGCCTTGTTAATTCCGCAGCTTTGGCGGCTTTCATGGCTGAAGAAATACTCTGCAGACTCATCCGAGACCTCGTCACCAGCGCCAGAACCGTCGATGTTCCTCCGCCTTCTCCCGCACCACCACCACCTCCTCTTATTTTTCATGGAGGCTCCTTTTAATTGGTGGGAGATATGGGATTTCTGCTGTGTGTTCTTGCTCATTTTTTAA

mRNA sequence

CTCTTCTTCCTCTTCTTCTTCTTCTCTCTTCTTCTTCCGCCATGGCAGCAGCTTCTTCCACAGCTTCAAAGGCGAAGATCTCTACCCTCCCACCAAAGCGCGGTCGTATCAAAGCTCAAATTTTTGAGAGCCTTGTTAATTCCGCAGCTTTGGCGGCTTTCATGGCTGAAGAAATACTCTGCAGACTCATCCGAGACCTCGTCACCAGCGCCAGAACCGTCGATGTTCCTCCGCCTTCTCCCGCACCACCACCACCTCCTCTTATTTTTCATGGAGGCTCCTTTTAATTGGTGGGAGATATGGGATTTCTGCTGTGTGTTCTTGCTCATTTTTTAA

Coding sequence (CDS)

ATGGCAGCAGCTTCTTCCACAGCTTCAAAGGCGAAGATCTCTACCCTCCCACCAAAGCGCGGTCGTATCAAAGCTCAAATTTTTGAGAGCCTTGTTAATTCCGCAGCTTTGGCGGCTTTCATGGCTGAAGAAATACTCTGCAGACTCATCCGAGACCTCGTCACCAGCGCCAGAACCGTCGATGTTCCTCCGCCTTCTCCCGCACCACCACCACCTCCTCTTATTTTTCATGGAGGCTCCTTTTAA

Protein sequence

MAAASSTASKAKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTSARTVDVPPPSPAPPPPPLIFHGGSF
Homology
BLAST of MELO3C026843 vs. NCBI nr
Match: KAE8653222.1 (hypothetical protein Csa_019661, partial [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 3.0e-29
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 0

Query: 4  ASSTASKAKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTSARTVDVP 63
          ASST+SK KISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVT ARTVDVP
Sbjct: 1  ASSTSSKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTGARTVDVP 60

Query: 64 PPSPAPPPPPLIFHGGSF 82
          PP+PA PPPPLIFHG SF
Sbjct: 61 PPTPARPPPPLIFHGSSF 78

BLAST of MELO3C026843 vs. NCBI nr
Match: KAG6583308.1 (hypothetical protein SDJN03_19240, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 4.3e-12
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 1  MAAASSTASKAKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTSARTV 60
          MAAA ST  KA IS+LPP+RGRIKA+IFESLVNSAAL       IL ++IR LV+ A+  
Sbjct: 1  MAAAPSTGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILFKVIRYLVSGAQIR 60

Query: 61 DVPPPSP-APPPPPLIFHGGS 81
           V PPSP APPPPPL + GGS
Sbjct: 61 AVLPPSPMAPPPPPLRYDGGS 74

BLAST of MELO3C026843 vs. NCBI nr
Match: KAG6583472.1 (hypothetical protein SDJN03_19404, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.9 bits (198), Expect = 5.7e-12
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 1  MAAASSTASKAKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTSARTV 60
          MAAA S   KA IS+LPP+RGRIKA+IFESLVNSAAL       IL ++IR LV+SA+  
Sbjct: 1  MAAAPSMGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILLKVIRYLVSSAQIR 60

Query: 61 DVPPPSP-APPPPPLIFHGGS 81
           VP PSP APPPPPL + GGS
Sbjct: 61 AVPLPSPVAPPPPPLRYDGGS 74

BLAST of MELO3C026843 vs. NCBI nr
Match: KAG6583309.1 (hypothetical protein SDJN03_19241, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 52/81 (64.20%), Postives = 59/81 (72.84%), Query Frame = 0

Query: 1  MAAASSTASKAKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTSARTV 60
          MAAA ST  KA IS+LPP+RGRIKA+IFESLVNSAAL       IL ++IR LV+ AR  
Sbjct: 1  MAAARSTGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILFKVIRYLVSGARVH 60

Query: 61 DVPPPSP-APPPPPLIFHGGS 81
           VP PSP AP PPPL + GGS
Sbjct: 61 AVPLPSPVAPLPPPLRYDGGS 74

BLAST of MELO3C026843 vs. ExPASy TrEMBL
Match: A0A0A0LS06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.7e-27
Identity = 72/81 (88.89%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1  MAAASSTASKAKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTSARTV 60
          MAAASSTASK KI TLPPKRGRIKAQI ESLVNSAALA FMAEEILCR IRDLVTSARTV
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 DVPPPSPAPPPPPLIFHGGSF 82
          D PPP PA PPPPLIFHG SF
Sbjct: 61 DAPPPYPA-PPPPLIFHGVSF 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8653222.13.0e-2992.31hypothetical protein Csa_019661, partial [Cucumis sativus][more]
KAG6583308.14.3e-1264.20hypothetical protein SDJN03_19240, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583472.15.7e-1264.20hypothetical protein SDJN03_19404, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583309.11.6e-1164.20hypothetical protein SDJN03_19241, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0LS066.7e-2788.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026843.1MELO3C026843.1mRNA