MELO3C026319.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C026319.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionNBS-LRR type resistance protein
Locationchr08: 30219512 .. 30219983 (+)
RNA-Seq ExpressionMELO3C026319.jh1
SyntenyMELO3C026319.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGGGGCTCGCGACTCAGCTTGGGGCTCGCGGCTCGGCTCGGCTCAACTCGTGGCTCGACTCGACTTGCGGCTCGTGGCTCGGCTCGCTCGACTTGGATTCGCAACTCAGGTACGGCTCAGCTTGTGGCTTGGTTCGGTTCGGCTTGGATTCACGGCTTGGCTTGGCTTTACATAGGCGTTTGCAAGATCAGAGATCCACGACCGTTGGAGCCTCGCCGGCGGCTTCTTGGCGAACGATGAAGCTCTACTTCAACGCGACAGACGGCCAAACGAAGGGGGACGCACGACGGTTCTGGGACGAAGGAGATGAAGGCGGAGGCATTGACGGACGACCGACTGCGGCAGAGACGACCGACTCCCTTGCATTCGTCCAAAGCTGCCGATGTAGAAAGGTCGCCGCTTGTGCAGACGATGGCGGCAGAGAAGAAACGCTGAAATGGACAGGAGAGGACGGTAGTGCTGTCGGCTGA

mRNA sequence

CTTGGGGCTCGCGACTCAGCTTGGGGCTCGCGGCTCGGCTCGGCTCAACTCGTGGCTCGACTCGACTTGCGGCTCGTGGCTCGGCTCGCTCGACTTGGATTCGCAACTCAGGTACGGCTCAGCTTGTGGCTTGGTTCGGTTCGGCTTGGATTCACGGCTTGGCTTGGCTTTACATAGGCGTTTGCAAGATCAGAGATCCACGACCGTTGGAGCCTCGCCGGCGGCTTCTTGGCGAACGATGAAGCTCTACTTCAACGCGACAGACGGCCAAACGAAGGGGGACGCACGACGGTTCTGGGACGAAGGAGATGAAGGCGGAGGCATTGACGGACGACCGACTGCGGCAGAGACGACCGACTCCCTTGCATTCGTCCAAAGCTGCCGATGTAGAAAGGTCGCCGCTTGTGCAGACGATGGCGGCAGAGAAGAAACGCTGAAATGGACAGGAGAGGACGGTAGTGCTGTCGGCTGA

Coding sequence (CDS)

ATGAAGCTCTACTTCAACGCGACAGACGGCCAAACGAAGGGGGACGCACGACGGTTCTGGGACGAAGGAGATGAAGGCGGAGGCATTGACGGACGACCGACTGCGGCAGAGACGACCGACTCCCTTGCATTCGTCCAAAGCTGCCGATGTAGAAAGGTCGCCGCTTGTGCAGACGATGGCGGCAGAGAAGAAACGCTGAAATGGACAGGAGAGGACGGTAGTGCTGTCGGCTGA

Protein sequence

MKLYFNATDGQTKGDARRFWDEGDEGGGIDGRPTAAETTDSLAFVQSCRCRKVAACADDGGREETLKWTGEDGSAVG
Homology
[Close]
BLAST of MELO3C026319.jh1 vs. NCBI nr
Match: TYK14897.1 (foot protein 1 variant 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (411), Expect = 1.55e-47
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MKLYFNATDGQTKGDARRFWDEGDEGGGIDGRPTAAETTDSLAFVQSCRCRKVAACADDG 60
           MKLYFNATDGQTKGDARRFWDEGDEGGG+DGRPTAAETTDSLAFVQSCRCRKVAACADDG
Sbjct: 231 MKLYFNATDGQTKGDARRFWDEGDEGGGVDGRPTAAETTDSLAFVQSCRCRKVAACADDG 290

Query: 61  GREETLKWTGEDGSAVG 77
           GREETLKWTGEDGSAVG
Sbjct: 291 GREETLKWTGEDGSAVG 307

[Close]
BLAST of MELO3C026319.jh1 vs. NCBI nr
Match: KAA0067878.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (406), Expect = 1.79e-47
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MKLYFNATDGQTKGDARRFWDEGDEGGGIDGRPTAAETTDSLAFVQSCRCRKVAACADDG 60
           MKLYFNATDGQTKGDARRFWDEGDEGGG+DGRPTAAETTDSLAFVQSCRCRKVAACA+DG
Sbjct: 172 MKLYFNATDGQTKGDARRFWDEGDEGGGVDGRPTAAETTDSLAFVQSCRCRKVAACANDG 231

Query: 61  GREETLKWTGEDGSAVG 77
           GREETLKWTGEDGSAVG
Sbjct: 232 GREETLKWTGEDGSAVG 248

[Close]
BLAST of MELO3C026319.jh1 vs. NCBI nr
Match: KAA0049958.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK07689.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 1.78e-27
Identity = 52/64 (81.25%), Postives = 55/64 (85.94%), Query Frame = 0 

Query: 14  GDARRFWDEGDEGGGIDGRPTAAETTDSLAFVQSCRCRKVAACADDGGREETLKWTGEDG 73
           GDARRFW EGDEGGG+DGRPTA ET DSLAFV+SCR  +V ACADDGG EETLKWTG DG
Sbjct: 197 GDARRFWGEGDEGGGVDGRPTAVETIDSLAFVRSCRRGEVVACADDGGGEETLKWTGGDG 256

Query: 74  SAVG 77
            AVG
Sbjct: 257 GAVG 260

[Close]
BLAST of MELO3C026319.jh1 vs. NCBI nr
Match: TYK21024.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 8.22e-23
Identity = 47/63 (74.60%), Postives = 51/63 (80.95%), Query Frame = 0 

Query: 15  DARRFWDEGDEGGGIDGRPTAAETTDSLAFVQSCRCRKVAACADDGGREETLKWTGEDGS 74
           DARRFWD+GDEGGG+D R TAAE  DSLAFV+SCR R+V AC DDGG EETL W G DG 
Sbjct: 220 DARRFWDKGDEGGGVDKRLTAAEMADSLAFVRSCRRREVVACEDDGGGEETLNWMGGDGG 279

Query: 75  AVG 77
           AVG
Sbjct: 280 AVG 282

[Close]
BLAST of MELO3C026319.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CSH9 (Foot protein 1 variant 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1779G00090 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 7.49e-48
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MKLYFNATDGQTKGDARRFWDEGDEGGGIDGRPTAAETTDSLAFVQSCRCRKVAACADDG 60
           MKLYFNATDGQTKGDARRFWDEGDEGGG+DGRPTAAETTDSLAFVQSCRCRKVAACADDG
Sbjct: 231 MKLYFNATDGQTKGDARRFWDEGDEGGGVDGRPTAAETTDSLAFVQSCRCRKVAACADDG 290

Query: 61  GREETLKWTGEDGSAVG 77
           GREETLKWTGEDGSAVG
Sbjct: 291 GREETLKWTGEDGSAVG 307

[Close]
BLAST of MELO3C026319.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VJB1 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00320 PE=4 SV=1)

HSP 1 Score: 160 bits (406), Expect = 8.68e-48
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MKLYFNATDGQTKGDARRFWDEGDEGGGIDGRPTAAETTDSLAFVQSCRCRKVAACADDG 60
           MKLYFNATDGQTKGDARRFWDEGDEGGG+DGRPTAAETTDSLAFVQSCRCRKVAACA+DG
Sbjct: 172 MKLYFNATDGQTKGDARRFWDEGDEGGGVDGRPTAAETTDSLAFVQSCRCRKVAACANDG 231

Query: 61  GREETLKWTGEDGSAVG 77
           GREETLKWTGEDGSAVG
Sbjct: 232 GREETLKWTGEDGSAVG 248

[Close]
BLAST of MELO3C026319.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CBJ7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G001050 PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 8.61e-28
Identity = 52/64 (81.25%), Postives = 55/64 (85.94%), Query Frame = 0 

Query: 14  GDARRFWDEGDEGGGIDGRPTAAETTDSLAFVQSCRCRKVAACADDGGREETLKWTGEDG 73
           GDARRFW EGDEGGG+DGRPTA ET DSLAFV+SCR  +V ACADDGG EETLKWTG DG
Sbjct: 197 GDARRFWGEGDEGGGVDGRPTAVETIDSLAFVRSCRRGEVVACADDGGGEETLKWTGGDG 256

Query: 74  SAVG 77
            AVG
Sbjct: 257 GAVG 260

[Close]
BLAST of MELO3C026319.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DBR4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold778G00180 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.98e-23
Identity = 47/63 (74.60%), Postives = 51/63 (80.95%), Query Frame = 0 

Query: 15  DARRFWDEGDEGGGIDGRPTAAETTDSLAFVQSCRCRKVAACADDGGREETLKWTGEDGS 74
           DARRFWD+GDEGGG+D R TAAE  DSLAFV+SCR R+V AC DDGG EETL W G DG 
Sbjct: 220 DARRFWDKGDEGGGVDKRLTAAEMADSLAFVRSCRRREVVACEDDGGGEETLNWMGGDGG 279

Query: 75  AVG 77
           AVG
Sbjct: 280 AVG 282

The following BLAST results are available for this feature:
BLAST of MELO3C026319.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK14897.11.55e-4798.70foot protein 1 variant 1-like [Cucumis melo var. makuwa][more]
KAA0067878.11.79e-4797.40NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0049958.11.78e-2781.25NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK07689.1 NBS-LRR t... [more]
TYK21024.18.22e-2374.60NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C026319.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C026319.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CSH97.49e-4898.70Foot protein 1 variant 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7VJB18.68e-4897.40NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3CBJ78.61e-2881.25NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3DBR43.98e-2374.60NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
BLAST of MELO3C026319.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026319.jh1.t1MELO3C026319.jh1.t1mRNA