MELO3C026318.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C026318.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCACTA en-spm transposon protein
Locationchr08: 29177843 .. 29178079 (-)
RNA-Seq ExpressionMELO3C026318.jh1
SyntenyMELO3C026318.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGGAGAAGAAATGGAAAATGAAAGATCAAGAACTCACCGGCAACGATATGGGTCTTCTCACTGTGGGTCTCTGTCACCGAGAAGAAAGGATGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTTGCCGTGCGTCGTTAGTGAGGGGAGGGATTTTGAAGAAGGAAAATGGAGTGTGTGGGAAGAAGGAAAGATAGGGATTTTGAAGAAGGAAAGTGAGGTATTTTGA

mRNA sequence

ATGAAGGGAGAAGAAATGGAAAATGAAAGATCAAGAACTCACCGGCAACGATATGGGTCTTCTCACTGTGGGTCTCTGTCACCGAGAAGAAAGGATGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTTGCCGTGCGTCGTTAGTGAGGGGAGGGATTTTGAAGAAGGAAAATGGAGTGTGTGGGAAGAAGGAAAGATAGGGATTTTGAAGAAGGAAAGTGAGGTATTTTGA

Coding sequence (CDS)

ATGAAGGGAGAAGAAATGGAAAATGAAAGATCAAGAACTCACCGGCAACGATATGGGTCTTCTCACTGTGGGTCTCTGTCACCGAGAAGAAAGGATGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTTGCCGTGCGTCGTTAGTGAGGGGAGGGATTTTGAAGAAGGAAAATGGAGTGTGTGGGAAGAAGGAAAGATAGGGATTTTGAAGAAGGAAAGTGAGGTATTTTGA

Protein sequence

MKGEEMENERSRTHRQRYGSSHCGSLSPRRKDVEMRRMGLRLGFLPCVVSEGRDFEEGKWSVWEEGKIGILKKESEVF
Homology
BLAST of MELO3C026318.jh1 vs. NCBI nr
Match: KAA0034002.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK02801.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 2.80e-09
Identity = 37/59 (62.71%), Postives = 41/59 (69.49%), Query Frame = 0

Query: 17 RYGSSHCGSLSPRRKDVEMRRMGLRLGFLPCVVSEGRDFEEGKWSVWEEGKIGILKKES 75
          RYGS   GS S RRKD+EMRRMGLRLGF  CVV       EG  +V +EGK GILKKE+
Sbjct: 10 RYGSPRHGSPSSRRKDMEMRRMGLRLGFSSCVVVV---VLEG--NVHDEGKGGILKKEN 63

BLAST of MELO3C026318.jh1 vs. NCBI nr
Match: KAA0047775.1 (putative amidase [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 3.76e-07
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 30 RKDVEMRRMGLRLGFLPCVVSEGRDFEEGKWSVWEEGKIGILKKESE 76
          +K     + G+++G   CVV EGRDFE+GK SV EEGK GILKKE++
Sbjct: 7  KKGRGAEKNGVKVGVYSCVVCEGRDFEKGKGSVHEEGKGGILKKETQ 53

BLAST of MELO3C026318.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BST2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1418G00060 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.35e-09
Identity = 37/59 (62.71%), Postives = 41/59 (69.49%), Query Frame = 0

Query: 17 RYGSSHCGSLSPRRKDVEMRRMGLRLGFLPCVVSEGRDFEEGKWSVWEEGKIGILKKES 75
          RYGS   GS S RRKD+EMRRMGLRLGF  CVV       EG  +V +EGK GILKKE+
Sbjct: 10 RYGSPRHGSPSSRRKDMEMRRMGLRLGFSSCVVVV---VLEG--NVHDEGKGGILKKEN 63

BLAST of MELO3C026318.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U293 (Putative amidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00030 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.82e-07
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 30 RKDVEMRRMGLRLGFLPCVVSEGRDFEEGKWSVWEEGKIGILKKESE 76
          +K     + G+++G   CVV EGRDFE+GK SV EEGK GILKKE++
Sbjct: 7  KKGRGAEKNGVKVGVYSCVVCEGRDFEKGKGSVHEEGKGGILKKETQ 53

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0034002.12.80e-0962.71CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK02801.1 CACTA en-... [more]
KAA0047775.13.76e-0755.32putative amidase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BST21.35e-0962.71CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7U2931.82e-0755.32Putative amidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G000... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026318.jh1.t1MELO3C026318.jh1.t1mRNA