MELO3C026290 (gene) Melon (DHL92) v4

Overview


Name	MELO3C026290
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Ribosomal RNA-processing protein 40
Location	chr02: 26087380 .. 26091588 (-)
RNA-Seq Expression	MELO3C026290
Synteny	MELO3C026290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGTACGGAAAGCTTAGGTTAAAAAAGTGATCCCGTGAAATTTAATTTTCCCCTAATAAATTCTCAAAACAATTCGTTCTGCACTTGTTCGCGCGTATTACTTCTCTCTTTCGTGTTCATCGCTCACCATTCTTCTGATCGCCGCTTGCAAGTACAAGATTTCTTTTACTTGTATCCGCAGCAATGGTTGAAAAGCCCTCTAGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTAAGTTTGGAATTAACCTCATCCGTTCGATGTTCTGCAGTTTCTTAATGTATTGGAGAATTCAGGCATTTTTGTTGGAATGTAAAATTGTTTAGGTTCCAGGAGATGTGGTTCTTGACCTCTCAAACATGACCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGTGGCTCCTAGGGTTTTCTTTCTTTCAATGTTTATGCTTCTATTATATGTTTCTGCTTTTCAACACCCATTAGTTTTCATTTGCAGTTGTGTTGTTTACAAGATTTCTTAATTTCATGTTTTTTTTTAAAATAATCTTTCAGGACCAAGATGCTATTTCTGTCTCCAAAGTTGGAAAACTTAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGGTAGGTAAATGACATTGTTCAAATTGGCATTGAGGATCCTTATGTTGTTTTTTCTTTCAGCTATCTTTTGAATTGTGATCTTCAACGCTAGTTTCGGGGGCTTTCTTTAATCGAATTGCTAGCATTTTCATCCTGACGTTTACTTTTTATATAATTTGCTGTTTTCCAGTACGTGCCATGTGCGGAAGATTGTGTCCTTGGAATCGTGCTTGACTCTAGAGCCGACGTAAGTGCTGCTTTATTGTTAAAACATGTATACGTTCAATTATGAAATGATTGGCCCATGCTGTTTCCGATTGTCGTGTGTGGATGGTATGGTTTGACTGGTATCCACATACGCTATCGTTGAGGGAAATAAAAGAATATATAAGGGAAAGGGTGCCTGGCCCTAGCTACAGAAAAAGACTCCAAACCATAAGAACAAGACCAAGCTCGTAATTACAAAAAAGTTTTAGTCGCTAATCTCCACAAATAGGCGTTAAACATAGCTTCCTCCCAAACTTTCTTGCCAGATCGCCCAATCTCTCTACAAATCTAATATGCATTTCATCCAAATGTCACAAAAGTACAAAGAAAGTAGCAGGCCACAAAACTTTGCCCTTCTCCTTGTAGGGAGGAGGATTTAGAAGCACTTCCTACAGCAAAACCTTGCCATATGGCCCATATCTAATTTGAACCGGACAAACACCAAGTAATTTTATTCAGCGACTCCGAAGGTAGTGAGCAAACTAATCCCATAAAAATTGATCTAGGTCCTCCTCCTGCCTTCTGCAAAAATGCACCTTTGCGAGGGTATCCATGTCTAATTAGTCCTGTGATACTAGGGAAGATTTAGGTAAACATCAACTTGTTTTTATCAACGATTCAACTGTTTATGTTAATAGTTTATGCAGATTATTCAAGTGCTCCCTTCTGTGAGAACCCTCGAAATAAATATGAGACCTGAAACCAAATACCAAATGAATACCCTTTCCTCTCTCAGACTTGCCCTTATAGAAGGCTATCCACGTGCAAAGAACACACTCAATGCACTCTCTACCTAACTCTAACTGTAACACCTAGGCTCCACGAAGTCACAGCAGACGTGCACCCAAAAAAATATCACAAAGATGCTCATTCCTCACATACAACAATATCTGTAGGCTTCTCTATTTTCTCTTTCTTATTTCTATGTGTATAAACCTTGGGAAGTTGGAGTCTGTTAGATTTTTGTTCGATTACCTTTTAAGTTATCATCATTTAATTATTTCTTTTCCCGTTTGCAGAATTTTCTTGTTGACATAAAAGGTCCGTCATTAGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGCGAAACATACCAAAATTTGAGGTATGCATAATTTTTTACATAATTTTGTTATTTTCACTATATGACCTTTCGATATAGTTGCTCCTGTCTTCCTTTTTTAGAAGTTTTATACTTTGTCAGTTCATGTATTATCCACGAGAGGTTCTGCTTGAGTGTGTTTTTTTCCCATTTTTATTGGGTCCTAGTGGGGGTGCAGGGAGTGGTTAAGAATTATACTTCTGTAGTAAAAGGTGTACTATTTTACCTTTTGTTGGCTTATTTTCCTTTGCAATCTATATATCCTATATTCCAAGTGTATTTGGTCCTTAAACATGTCCTATTGATTCTCTGTTTCATAGATGGGTGCCCTGCTTTATGTGCGCGTAGTGAAGGTAAACCCTGGAATGAATCCTGAGTTGGCATGCACTGATGGTTAGTTAACTTCTTCATATCTCCACGTTCAATAAACTTTTCGAAGGTTTAAAACAGTCTCCACCAAAGAAATATATTGATGTTCACGTAAACTCATCATCTGAAGAGGGGTGGGCAGCATCTGCGTTCTCCATGCAAGTGCGTTTTTCTTTTTCGGTTTTTGGTTGTTGCGATAATATGTCTCACGTGAGTATCATTTTGTTCTGTGTAGCAAGTGGGAAAGCAGCTGGATTTGGCCTCCTGAAAGATGGCTTCATGTTTGAGTGTTCAACTGGCTTATCAAGAATGTAAGCTAAATTGCTTTTCTTAATTTTTTTTCCCTTTCTTCTGATCATTAATTCTCATTGATTATCCTCTCTTCTAGGCTTCTAAGTTCTCCCCCATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTCGAGACAGCAATTGGTTTAAATGGCCGCGTTTGGGTACTTTTCTTCAATCCTTACATTTTCAATGCTAAACACTATGGGTTTGCTATGCATAATTCTCTTCCCATACTTCCTTCTAGCACACATTAACCTTCTATTTATTGAAGAAAAATTTTCCTCATCTGACAGTTATATCTAGTTGTTGGAAACTTGGGATTATTACTCCATTCTTCATCTTCTCCTTTCAATCTCTAATATAACGCTTCTTTGAAACTTGAATATGTAATTTCCGGGTAAAAAACCACTTTTGGTCTTGAATTTTGCAATAATTTAATCCTTAAACTTAATCCTTAAACTTAGTAACAATTTAGTCCCTATACTTTAATAAGAACCGATTAAGTCATTGTTGTGAAAAATACGATAAGCCTTAGTCTCAATTTTATTTATCAACAACGGTGAGGGAAGGATTCAAGAGCTTCCTATCTTTCTGCAAGGAGACCTAAAACAACGGTGAGGGAAGGATTCAAGAGCTTCCTATCTTTCTGCAAGGAGACCTAATACAAGACAATTTCCAAAAAGCTGCCCTCCCCAAATAACCAAAACAATATTTATACTTGTACGTAAAGCATCACGGCCCCCTAACTAACAGTATTCCCGGGGCCCATATTTACGACTTCCTTACCTTCTCCTTCTCTTGCATACAAGCCTACATTTTTACTATGGGTGGCCTAACAAAATATAAGTAAGATTTTATGAAATTGGGAATCAAATTTATGTATAAACTATAATAAGTTATGTAATAAATATCAACAATTTTCACGAAGTTTTTTACGATAATGGACTAAACCTTTACCAAGGGTAAAGTATTAGGACTAAATCACTCTTTACTAACATCTGGTGACTTGTTATTTTCATGAAAGTTGAAGGACCGAAAGTGTTTTTTTTTTAACCAAATTTATTCTACCAATCTTACTAATAAACAGCCCTTTCTTACTTTTGACATCTCCATCTCTTCTTCCAGGTCAATGCTGATTCTCCGTCTACAATCATTGTTGTTTCAAATGCAATATTGAACTCCGAAACTCTGTCTGGTGTTCAACAGAGAATCATGGTGGACAAACTCCTTGCCAATTTAAAGCTGTCAAGTTAAAATTCTAATTTATAGTCATGTATTATTTAACTCAAGTCTTACGAAAACAGTAACCAAATTTTTTCTTCTCTTTGAAATTGAGAAAGATTCACGATTTAATTGTATTCATTAGCTCTCAAGTAAAATGGCTATTTGGTCTACTTGTTAAGGAGTTATTGGCCCCGAAAAAGAATTAAAGATAGTGTGTGGATCAAATTTTCATAATTCTATTTGTTTAGCAGATGTACCTGAAGGGAAAGAAGAGCAGACATACTCCAAATTTAATTTTGTTAAATTGTTC

mRNA sequence

ACGTACGGAAAGCTTAGGTTAAAAAAGTGATCCCGTGAAATTTAATTTTCCCCTAATAAATTCTCAAAACAATTCGTTCTGCACTTGTTCGCGCGTATTACTTCTCTCTTTCGTGTTCATCGCTCACCATTCTTCTGATCGCCGCTTGCAAGTACAAGATTTCTTTTACTTGTATCCGCAGCAATGGTTGAAAAGCCCTCTAGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTTCCAGGAGATGTGGTTCTTGACCTCTCAAACATGACCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCAAGATGCTATTTCTGTCTCCAAAGTTGGAAAACTTAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGCGGAAGATTGTGTCCTTGGAATCGTGCTTGACTCTAGAGCCGACAATTTTCTTGTTGACATAAAAGGTCCGTCATTAGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGCGAAACATACCAAAATTTGAGATGGGTGCCCTGCTTTATGTGCGCGTAGTGAAGTCTCCACCAAAGAAATATATTGATGTTCACGTAAACTCATCATCTGAAGAGGGGTGGGCAGCATCTGCGTTCTCCATGCAACAAGTGGGAAAGCAGCTGGATTTGGCCTCCTGAAAGATGGCTTCATGTTTGAGTGTTCAACTGGCTTATCAAGAATGCTTCTAAGTTCTCCCCCATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTCGAGACAGCAATTGGTTTAAATGGCCGCGTTTGGGTCAATGCTGATTCTCCGTCTACAATCATTGTTGTTTCAAATGCAATATTGAACTCCGAAACTCTGTCTGGTGTTCAACAGAGAATCATGGTGGACAAACTCCTTGCCAATTTAAAGCTGTCAAGTTAAAATTCTAATTTATAGTCATGTATTATTTAACTCAAGTCTTACGAAAACAGTAACCAAATTTTTTCTTCTCTTTGAAATTGAGAAAGATTCACGATTTAATTGTATTCATTAGCTCTCAAGTAAAATGGCTATTTGGTCTACTTGTTAAGGAGTTATTGGCCCCGAAAAAGAATTAAAGATAGTGTGTGGATCAAATTTTCATAATTCTATTTGTTTAGCAGATGTACCTGAAGGGAAAGAAGAGCAGACATACTCCAAATTTAATTTTGTTAAATTGTTC

Coding sequence (CDS)

ATGGTTGAAAAGCCCTCTAGTTCGTCATCTACTCTCGTTGATCAGCCAGTTGTTCCAGGAGATGTGGTTCTTGACCTCTCAAACATGACCAACGAGACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCAAGATGCTATTTCTGTCTCCAAAGTTGGAAAACTTAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGCGGAAGATTGTGTCCTTGGAATCGTGCTTGACTCTAGAGCCGACAATTTTCTTGTTGACATAAAAGGTCCGTCATTAGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGCGAAACATACCAAAATTTGAGATGGGTGCCCTGCTTTATGTGCGCGTAGTGAAGTCTCCACCAAAGAAATATATTGATGTTCACGTAAACTCATCATCTGAAGAGGGGTGGGCAGCATCTGCGTTCTCCATGCAACAAGTGGGAAAGCAGCTGGATTTGGCCTCCTGA

Protein sequence

MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKSPPKKYIDVHVNSSSEEGWAASAFSMQQVGKQLDLAS

Homology

[Close]

BLAST of MELO3C026290 vs. NCBI nr
Match: XP_008464560.1 (PREDICTED: putative exosome complex component rrp40 [Cucumis melo] >KAA0057849.1 putative exosome complex component rrp40 [Cucumis melo var. makuwa] >TYJ98532.1 putative exosome complex component rrp40 [Cucumis melo var. makuwa])

HSP 1 Score: 266.2 bits (679), Expect = 2.0e-67
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKSPP 136
           EMGALLYVRVVK  P
Sbjct: 121 EMGALLYVRVVKVNP 135

[Close]

BLAST of MELO3C026290 vs. NCBI nr
Match: XP_004138110.1 (putative exosome complex component rrp40 isoform X1 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 7.5e-67
Identity = 132/135 (97.78%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNM NETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKSPP 136
           EMGALLYVRVVK  P
Sbjct: 121 EMGALLYVRVVKVNP 135

[Close]

BLAST of MELO3C026290 vs. NCBI nr
Match: KAE8652401.1 (hypothetical protein Csa_014298 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 7.5e-67
Identity = 132/135 (97.78%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNM NETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKSPP 136
           EMGALLYVRVVK  P
Sbjct: 121 EMGALLYVRVVKVNP 135

[Close]

BLAST of MELO3C026290 vs. NCBI nr
Match: KAG6589448.1 (Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256.5 bits (654), Expect = 1.6e-64
Identity = 127/135 (94.07%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEK SSSSSTLVDQPVVPGDVVLDLSNM NETIKLGGGLRQD DAISVSKVGKLRFSKP
Sbjct: 786 MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 845

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIV+DSRADNFLVDIKGP+LAFLPVLAFEGGTRRNIPKF
Sbjct: 846 NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 905

Query: 121 EMGALLYVRVVKSPP 136
           EMGALLYVRVVK+ P
Sbjct: 906 EMGALLYVRVVKANP 920

[Close]

BLAST of MELO3C026290 vs. NCBI nr
Match: XP_022973376.1 (putative exosome complex component rrp40 [Cucurbita maxima])

HSP 1 Score: 256.5 bits (654), Expect = 1.6e-64
Identity = 127/135 (94.07%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEK SSSSS LVDQPVVPGDVVLDLSNMTNETIKLGGGLRQD DAISV+KVGKLRFSKP
Sbjct: 1   MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIV+DSR+DNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKSPP 136
           EMGALLYVRVVK+ P
Sbjct: 121 EMGALLYVRVVKANP 135

[Close]

BLAST of MELO3C026290 vs. ExPASy Swiss-Prot
Match: Q7KWX9 (Putative exosome complex component rrp40 OS=Dictyostelium discoideum OX=44689 GN=exosc3 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-21
Identity = 52/121 (42.98%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 11  TLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKPNK-YWVESSQ 70
           TL DQ VVPGDV+  + ++    +++G GL Q +D +  +K G LR+SK ++ YW+E+ Q
Sbjct: 3   TLKDQFVVPGDVIGKIGDL---KVRIGPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQ 62

Query: 71  KRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVR 130
           KRYVP  ED V+G +++  A++F VDI     A L   +FEG T+ N P   +G L+Y R
Sbjct: 63  KRYVPQVEDMVIGTIIEKHAESFKVDIGSSCSALLSAYSFEGATKSNKPLLNVGNLIYCR 120

[Close]

BLAST of MELO3C026290 vs. ExPASy Swiss-Prot
Match: Q7TQK4 (Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-16
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 37  GGGLRQDQDAISVSKVGKLRFSKPN-----KYWVESSQKRYVPCAEDCVLGIVLDSRADN 96
           G GLR+  D + V+K G+LR  +P+      YWV+S QKRYVP   D V+GIV+    D 
Sbjct: 68  GPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKRYVPVKGDHVIGIVIAKSGDI 127

Query: 97  FLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVV 132
           F VD+ G   A L  LAFEG T+RN P  ++G L+Y + V
Sbjct: 128 FKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCV 167

[Close]

BLAST of MELO3C026290 vs. ExPASy Swiss-Prot
Match: Q3T0E1 (Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-16
Identity = 53/150 (35.33%), Postives = 77/150 (51.33%), Query Frame = 0


Query: 8   SSSTLVDQPVVPGDVV--------------------LDLSNMTNETIKLGGGLRQDQDAI 67
           ++ T++DQ V+PG+ +                    L+ +  +   +  G GLR+  D +
Sbjct: 19  AARTVLDQVVLPGEELLLPDQEDGDGPGGAGERPLRLNAAARSRGRVVCGPGLRRCGDRL 78

Query: 68  SVSKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSL 127
            V+K G+LR  +P        YWV+S QKRYVP   D V+GIV     D F VD+ G   
Sbjct: 79  LVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEP 138

Query: 128 AFLPVLAFEGGTRRNIPKFEMGALLYVRVV 132
           A L  LAFEG T+RN P  ++G L+Y + V
Sbjct: 139 ASLSYLAFEGATKRNRPNVQVGDLIYGQFV 168

[Close]

BLAST of MELO3C026290 vs. ExPASy Swiss-Prot
Match: Q8IPX7 (Exosome complex component RRP40 OS=Drosophila melanogaster OX=7227 GN=Rrp40 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-16
Identity = 45/128 (35.16%), Postives = 73/128 (57.03%), Query Frame = 0


Query: 7   SSSSTLVDQPVVPGDVVLDLSNMT-NETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWV 66
           S++ST+    V+PG+ +  +  +  ++ + LG GLR+  D +  SK G LR  +P  +WV
Sbjct: 2   SATSTI----VMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWV 61

Query: 67  ESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGAL 126
           ++ Q+RY+P   D +LGIV     D + VDI     A +  LAFE  +++N P    G L
Sbjct: 62  DNYQRRYIPARGDLILGIVRAKAGDLYRVDIGATDTASISYLAFEAASKKNRPDLIPGDL 121

Query: 127 LYVRVVKS 134
           +Y RV+ +
Sbjct: 122 IYARVLNA 125

[Close]

BLAST of MELO3C026290 vs. ExPASy Swiss-Prot
Match: Q9NQT5 (Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3)

HSP 1 Score: 85.5 bits (210), Expect = 6.3e-16
Identity = 45/101 (44.55%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 37  GGGLRQDQDAISVSKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVLDSRAD 96
           G GLR+  D + V+K G+LR  +P        YWV+S QKRYVP   D V+GIV     D
Sbjct: 68  GPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDSQQKRYVPVKGDHVIGIVTAKSGD 127

Query: 97  NFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVV 132
            F VD+ G   A L  L+FEG T+RN P  ++G L+Y + V
Sbjct: 128 IFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFV 168

[Close]

BLAST of MELO3C026290 vs. ExPASy TrEMBL
Match: A0A5D3BFK9 (Ribosomal RNA-processing protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001380 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 9.6e-68
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKSPP 136
           EMGALLYVRVVK  P
Sbjct: 121 EMGALLYVRVVKVNP 135

[Close]

BLAST of MELO3C026290 vs. ExPASy TrEMBL
Match: A0A1S3CNB3 (Ribosomal RNA-processing protein 40 OS=Cucumis melo OX=3656 GN=LOC103502403 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 9.6e-68
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKSPP 136
           EMGALLYVRVVK  P
Sbjct: 121 EMGALLYVRVVKVNP 135

[Close]

BLAST of MELO3C026290 vs. ExPASy TrEMBL
Match: A0A0A0LP58 (Ribosomal RNA-processing protein 40 OS=Cucumis sativus OX=3659 GN=Csa_1G004950 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.7e-67
Identity = 132/135 (97.78%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEKPSSSSSTLVDQPVVPGDVVLDLSNM NETIKLGGGLRQDQDAISVSKVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKSPP 136
           EMGALLYVRVVK  P
Sbjct: 121 EMGALLYVRVVKVNP 135

[Close]

BLAST of MELO3C026290 vs. ExPASy TrEMBL
Match: A0A6J1I8H3 (Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111471933 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 7.6e-65
Identity = 127/135 (94.07%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEK SSSSS LVDQPVVPGDVVLDLSNMTNETIKLGGGLRQD DAISV+KVGKLRFSKP
Sbjct: 1   MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIV+DSR+DNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKSPP 136
           EMGALLYVRVVK+ P
Sbjct: 121 EMGALLYVRVVKANP 135

[Close]

BLAST of MELO3C026290 vs. ExPASy TrEMBL
Match: A0A6J1E1A1 (Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC111429887 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.3e-64
Identity = 126/135 (93.33%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           MVEK SSSSSTLVDQPVVPGDVVLDLSNM NET+KLGGGLRQD DAISVSKVGKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETLKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIV+DSRADNFLVDIKGP+LAFLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKSPP 136
           EMGALLYVRVVK+ P
Sbjct: 121 EMGALLYVRVVKANP 135

[Close]

BLAST of MELO3C026290 vs. TAIR 10
Match: AT4G32175.1 (PNAS-3 related )

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-50
Identity = 97/133 (72.93%), Postives = 111/133 (83.46%), Query Frame = 0


Query: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKP 60
           M  K S S ++L++Q VVPGDVVLDLSNM N+TIKLG GL QD DAIS  + GKL +SKP
Sbjct: 1   MAAKVSVSPTSLLNQIVVPGDVVLDLSNMNNQTIKLGSGLLQDNDAISAMRAGKLSYSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120
           NKYW+ESS KRY+P  +D VLGIV+DSRADNF VDIKGP LA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWLESSHKRYIPRPDDHVLGIVVDSRADNFWVDIKGPQLALLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKS 134
           E+G LLY+RVVK+
Sbjct: 121 EVGTLLYLRVVKT 133

[Close]

BLAST of MELO3C026290 vs. TAIR 10
Match: AT2G25355.1 (PNAS-3 related )

HSP 1 Score: 191.0 bits (484), Expect = 7.6e-49
Identity = 91/128 (71.09%), Postives = 106/128 (82.81%), Query Frame = 0


Query: 6   SSSSSTLVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWV 65
           S+S ++L+DQ VVPGDVVLDLSNMTN+TIKLG GLRQD + ISV + GKLR+SKPNKYWV
Sbjct: 6   STSPTSLIDQTVVPGDVVLDLSNMTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWV 65

Query: 66  ESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGAL 125
           ESS KRYVP  ED VLGIV+D + +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  L
Sbjct: 66  ESSHKRYVPRPEDHVLGIVVDCKGENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTL 125

Query: 126 LYVRVVKS 134
           LY RVVK+
Sbjct: 126 LYTRVVKT 133

[Close]

BLAST of MELO3C026290 vs. TAIR 10
Match: AT2G25355.2 (PNAS-3 related )

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-39
Identity = 74/105 (70.48%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 29  MTNETIKLGGGLRQDQDAISVSKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVLDSR 88
           MTN+TIKLG GLRQD + ISV + GKLR+SKPNKYWVESS KRYVP  ED VLGIV+D +
Sbjct: 1   MTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWVESSHKRYVPRPEDHVLGIVVDCK 60

Query: 89  ADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKS 134
            +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  LLY RVVK+
Sbjct: 61  GENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTLLYTRVVKT 105

The following BLAST results are available for this feature:

BLAST of MELO3C026290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464560.1	2.0e-67	98.52	PREDICTED: putative exosome complex component rrp40 [Cucumis melo] >KAA0057849.1...	[more]
XP_004138110.1	7.5e-67	97.78	putative exosome complex component rrp40 isoform X1 [Cucumis sativus]	[more]
KAE8652401.1	7.5e-67	97.78	hypothetical protein Csa_014298 [Cucumis sativus]	[more]
KAG6589448.1	1.6e-64	94.07	Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022973376.1	1.6e-64	94.07	putative exosome complex component rrp40 [Cucurbita maxima]	[more]

BLAST of MELO3C026290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7KWX9	1.7e-21	42.98	Putative exosome complex component rrp40 OS=Dictyostelium discoideum OX=44689 GN...	[more]
Q7TQK4	1.3e-16	46.00	Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3	[more]
Q3T0E1	1.7e-16	35.33	Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1	[more]
Q8IPX7	2.8e-16	35.16	Exosome complex component RRP40 OS=Drosophila melanogaster OX=7227 GN=Rrp40 PE=1...	[more]
Q9NQT5	6.3e-16	44.55	Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3	[more]

BLAST of MELO3C026290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BFK9	9.6e-68	98.52	Ribosomal RNA-processing protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3CNB3	9.6e-68	98.52	Ribosomal RNA-processing protein 40 OS=Cucumis melo OX=3656 GN=LOC103502403 PE=3...	[more]
A0A0A0LP58	3.7e-67	97.78	Ribosomal RNA-processing protein 40 OS=Cucumis sativus OX=3659 GN=Csa_1G004950 P...	[more]
A0A6J1I8H3	7.6e-65	94.07	Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111471933 ...	[more]
A0A6J1E1A1	1.3e-64	93.33	Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC11142988...	[more]

BLAST of MELO3C026290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32175.1	1.1e-50	72.93	PNAS-3 related	[more]
AT2G25355.1	7.6e-49	71.09	PNAS-3 related	[more]
AT2G25355.2	3.2e-39	70.48	PNAS-3 related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 74..149 e-value: 1.1E-17 score: 65.5
None	No IPR available	GENE3D	2.40.50.100		coord: 7..73 e-value: 8.7E-15 score: 56.6
None	No IPR available	PANTHER	PTHR21321:SF1	EXOSOME COMPLEX COMPONENT RRP40	coord: 11..138
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 9..70
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 11..138
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 70..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026290.1	MELO3C026290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding