MELO3C026129 (gene) Melon (DHL92) v4

Overview


Name	MELO3C026129
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Gag/pol protein
Location	chr08: 18621342 .. 18621595 (-)
RNA-Seq Expression	MELO3C026129
Synteny	MELO3C026129

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAGGGGAAGGAAGTGGAAGCAAATATTGCTACCATAGAGAAAGAGTTAGTGGGAGGATCGTCCTCTAAGACTAGAGTTGGACCTTCACAAATAAAGAAGAAGGGAAAGGGGAAGACTCCCAAGAATAGTAAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGAAGGTCATTGGTTGAGGAATTGTCCAAAGTACCTTGCTGAAAAGAAAGCTGAGAAGGAAGCACAAGGTAAATA

mRNA sequence

ATGGGTAAGGGGAAGGAAGTGGAAGCAAATATTGCTACCATAGAGAAAGAGTTAGTGGGAGGATCGTCCTCTAAGACTAGAGTTGGACCTTCACAAATAAAGAAGAAGGGAAAGGGGAAGACTCCCAAGAATAGTAAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGAAGGTCATTGGTTGAGGAATTGTCCAAAGTACCTTGCTGAAAAGAAAGCTGAGAAGGAAGCACAAGGTAAATA

Coding sequence (CDS)

ATGGGTAAGGGGAAGGAAGTGGAAGCAAATATTGCTACCATAGAGAAAGAGTTAGTGGGAGGATCGTCCTCTAAGACTAGAGTTGGACCTTCACAAATAAAGAAGAAGGGAAAGGGGAAGACTCCCAAGAATAGTAAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGAAGGTCATTGGTTGAGGAATTGTCCAAAGTACCTTGCTGAAAAGAAAGCTGAGAAGGAAGCACAAGGTAAA

Protein sequence

MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNEEGHWLRNCPKYLAEKKAEKEAQGK

Homology

[Close]

BLAST of MELO3C026129 vs. NCBI nr
Match: KAA0035756.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 4.8e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 60
           MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  EGHWLRNCPKYLAEKKAEKEAQGK 85
           EGHWLRNCPKYLAEKKAEKEAQGK
Sbjct: 131 EGHWLRNCPKYLAEKKAEKEAQGK 154

[Close]

BLAST of MELO3C026129 vs. NCBI nr
Match: TYK29862.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.9 bits (411), Expect = 1.2e-36
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 60
           MGKGKEVEANIAT EKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  EGHWLRNCPKYLAEKKAEKEAQGK 85
           +GHWLRNCP+YLAEKKAEKEAQGK
Sbjct: 131 DGHWLRNCPEYLAEKKAEKEAQGK 154

[Close]

BLAST of MELO3C026129 vs. NCBI nr
Match: KAA0045181.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK27371.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.9 bits (372), Expect = 3.9e-32
Identity = 75/84 (89.29%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1   MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 60
           MGKGKEVEAN+AT EKELV GSSSKTRVGPSQIKKK KGK PKNSKGKKVAKGKCYHCNE
Sbjct: 34  MGKGKEVEANVATTEKELVRGSSSKTRVGPSQIKKKRKGKNPKNSKGKKVAKGKCYHCNE 93

Query: 61  EGHWLRNCPKYLAEKKAEKEAQGK 85
           + HWL+NC KYLAEKKAEKEAQGK
Sbjct: 94  DRHWLKNCLKYLAEKKAEKEAQGK 117

[Close]

BLAST of MELO3C026129 vs. NCBI nr
Match: TYK06687.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 143.3 bits (360), Expect = 9.6e-31
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 60
          MGKGKEVEANIAT EKELVGGS SKTRVGPS +KKK KG+T KNSKGKKV KGKCYHCNE
Sbjct: 1  MGKGKEVEANIATTEKELVGGSFSKTRVGPSHMKKKRKGETLKNSKGKKVTKGKCYHCNE 60

Query: 61 EGHWLRNCPKYLAEKKAEKEAQGK 85
           GHWLRNCPK LAEKKAEK+AQGK
Sbjct: 61 NGHWLRNCPKCLAEKKAEKKAQGK 84

[Close]

BLAST of MELO3C026129 vs. NCBI nr
Match: TYK08781.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.1 bits (357), Expect = 2.1e-30
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 60
          MGKGK+VEAN+ TI+KELVGGSSSKTRVGPSQ+KKK KGK PKNSKGKKV KGKCYHCNE
Sbjct: 1  MGKGKQVEANVTTIDKELVGGSSSKTRVGPSQMKKKRKGKNPKNSKGKKVVKGKCYHCNE 60

Query: 61 EGHWLRNCPKYLAEKKAEKEAQGK 85
          +GHW RNCP  L EKKA+K+AQGK
Sbjct: 61 DGHWSRNCPNNLVEKKAKKKAQGK 84

[Close]

BLAST of MELO3C026129 vs. ExPASy TrEMBL
Match: A0A5A7T0L9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00290 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.3e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 60
           MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE
Sbjct: 71  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  EGHWLRNCPKYLAEKKAEKEAQGK 85
           EGHWLRNCPKYLAEKKAEKEAQGK
Sbjct: 131 EGHWLRNCPKYLAEKKAEKEAQGK 154

[Close]

BLAST of MELO3C026129 vs. ExPASy TrEMBL
Match: A0A5D3E1U5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001090 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.7e-37
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1   MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 60
           MGKGKEVEANIAT EKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE
Sbjct: 71  MGKGKEVEANIATTEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 130

Query: 61  EGHWLRNCPKYLAEKKAEKEAQGK 85
           +GHWLRNCP+YLAEKKAEKEAQGK
Sbjct: 131 DGHWLRNCPEYLAEKKAEKEAQGK 154

[Close]

BLAST of MELO3C026129 vs. ExPASy TrEMBL
Match: A0A5A7TUI5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00480 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-32
Identity = 75/84 (89.29%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1   MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 60
           MGKGKEVEAN+AT EKELV GSSSKTRVGPSQIKKK KGK PKNSKGKKVAKGKCYHCNE
Sbjct: 34  MGKGKEVEANVATTEKELVRGSSSKTRVGPSQIKKKRKGKNPKNSKGKKVAKGKCYHCNE 93

Query: 61  EGHWLRNCPKYLAEKKAEKEAQGK 85
           + HWL+NC KYLAEKKAEKEAQGK
Sbjct: 94  DRHWLKNCLKYLAEKKAEKEAQGK 117

[Close]

BLAST of MELO3C026129 vs. ExPASy TrEMBL
Match: A0A5D3C4B0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001810 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.7e-31
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 60
          MGKGKEVEANIAT EKELVGGS SKTRVGPS +KKK KG+T KNSKGKKV KGKCYHCNE
Sbjct: 1  MGKGKEVEANIATTEKELVGGSFSKTRVGPSHMKKKRKGETLKNSKGKKVTKGKCYHCNE 60

Query: 61 EGHWLRNCPKYLAEKKAEKEAQGK 85
           GHWLRNCPK LAEKKAEK+AQGK
Sbjct: 61 NGHWLRNCPKCLAEKKAEKKAQGK 84

[Close]

BLAST of MELO3C026129 vs. ExPASy TrEMBL
Match: A0A5D3CA75 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1300G00080 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.0e-30
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MGKGKEVEANIATIEKELVGGSSSKTRVGPSQIKKKGKGKTPKNSKGKKVAKGKCYHCNE 60
          MGKGK+VEAN+ TI+KELVGGSSSKTRVGPSQ+KKK KGK PKNSKGKKV KGKCYHCNE
Sbjct: 1  MGKGKQVEANVTTIDKELVGGSSSKTRVGPSQMKKKRKGKNPKNSKGKKVVKGKCYHCNE 60

Query: 61 EGHWLRNCPKYLAEKKAEKEAQGK 85
          +GHW RNCP  L EKKA+K+AQGK
Sbjct: 61 DGHWSRNCPNNLVEKKAKKKAQGK 84

The following BLAST results are available for this feature:

BLAST of MELO3C026129 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035756.1	4.8e-38	100.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK29862.1	1.2e-36	96.43	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0045181.1	3.9e-32	89.29	gag/pol protein [Cucumis melo var. makuwa] >TYK27371.1 gag/pol protein [Cucumis ...	[more]
TYK06687.1	9.6e-31	86.90	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK08781.1	2.1e-30	82.14	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C026129 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C026129 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0L9	2.3e-38	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G0029...	[more]
A0A5D3E1U5	5.7e-37	96.43	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G0010...	[more]
A0A5A7TUI5	1.9e-32	89.29	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G0048...	[more]
A0A5D3C4B0	4.7e-31	86.90	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G0018...	[more]
A0A5D3CA75	1.0e-30	82.14	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1300G000...	[more]

BLAST of MELO3C026129 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 54..70 e-value: 2.6E-4 score: 30.3
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 53..70 e-value: 5.8E-7 score: 29.3
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 54..70 score: 10.031823
None	No IPR available	GENE3D	4.10.60.10		coord: 21..82 e-value: 3.6E-10 score: 41.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..51
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 36..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026129.1	MELO3C026129.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding