MELO3C026047 (gene) Melon (DHL92) v4

Overview
NameMELO3C026047
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Description2-oxoglutarate-dependent dioxygenase family protein isoform 1
Locationchr08: 27254752 .. 27255125 (+)
RNA-Seq ExpressionMELO3C026047
SyntenyMELO3C026047
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTCCAAGCCGCCCATCGCCTCCAATCTTTTCTTCTTATTCGTCCGACCATTAGCCACCAGTGTCGCCCATCCCTTCGCTGCGTCCTCGCTTCATCAAGGTGAGCCATTATTCATCCATCATCCGCGAAGGGCCTGCCACCGTCGGTTCTCGCAAAGTCGTCGCTCGCGATTGCGGTTGCCCTGCTACACCACTGCTCCTTCTCAGTGTGTCGTCAGACGAAGCCCAACCACCGCCATGTTCCCTAGCTGTGCACCAGATCCGAGTTGACCGTCTGCCTTCTTCAGTCGCACACGCGTCAAGCTGCCTCCCAAGCCAAGCTGCTCGCAAGCCTCCCTTTCTTCCAGCCACTTGCGCTTGTGTTTGGTAA

mRNA sequence

ATGAACCTCCAAGCCGCCCATCGCCTCCAATCTTTTCTTCTTATTCGGCCTGCCACCGTCGGTTCTCGCAAAGTCGTCGCTCGCGATTGCGGTTGCCCTGCTACACCACTGCTCCTTCTCAGTGTGTCGTCAGACGAAGCCCAACCACCGCCATGTTCCCTAGCTGTGCACCAGATCCGAGTTGACCGTCTGCCTTCTTCAGTCGCACACGCGTCAAGCTGCCTCCCAAGCCAAGCTGCTCGCAAGCCTCCCTTTCTTCCAGCCACTTGCGCTTGTGTTTGGTAA

Coding sequence (CDS)

ATGAACCTCCAAGCCGCCCATCGCCTCCAATCTTTTCTTCTTATTCGGCCTGCCACCGTCGGTTCTCGCAAAGTCGTCGCTCGCGATTGCGGTTGCCCTGCTACACCACTGCTCCTTCTCAGTGTGTCGTCAGACGAAGCCCAACCACCGCCATGTTCCCTAGCTGTGCACCAGATCCGAGTTGACCGTCTGCCTTCTTCAGTCGCACACGCGTCAAGCTGCCTCCCAAGCCAAGCTGCTCGCAAGCCTCCCTTTCTTCCAGCCACTTGCGCTTGTGTTTGGTAA

Protein sequence

MNLQAAHRLQSFLLIRPATVGSRKVVARDCGCPATPLLLLSVSSDEAQPPPCSLAVHQIRVDRLPSSVAHASSCLPSQAARKPPFLPATCACVW
Homology
[Close]
BLAST of MELO3C026047 vs. NCBI nr
Match: KAA0050407.1 (2-oxoglutarate-dependent dioxygenase family protein isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-30
Identity = 72/78 (92.31%), Postives = 72/78 (92.31%), Query Frame = 0 

Query: 17  PATVGSRKVVARDCGCPATPLLLLSVSSDEAQPPPCSLAVHQIRVDRLPSSVAHASSCLP 76
           PATVGSRKVVAR CG PATPLLLLSVSSDEAQPPPCSLAVHQIRVD LPSS AHASS LP
Sbjct: 105 PATVGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP 164

Query: 77  SQAARKPPFLPATCACVW 95
           SQAARKPPFL ATCACVW
Sbjct: 165 SQAARKPPFLAATCACVW 182

[Close]
BLAST of MELO3C026047 vs. NCBI nr
Match: TYJ97997.1 (2-oxoglutarate-dependent dioxygenase family protein isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 5.4e-30
Identity = 71/78 (91.03%), Postives = 71/78 (91.03%), Query Frame = 0 

Query: 17  PATVGSRKVVARDCGCPATPLLLLSVSSDEAQPPPCSLAVHQIRVDRLPSSVAHASSCLP 76
           PA VGSRKVVAR CG PATPLLLLSVSSDEAQPPPCSLAVHQIRVD LPSS AHASS LP
Sbjct: 105 PAAVGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP 164

Query: 77  SQAARKPPFLPATCACVW 95
           SQAARKPPFL ATCACVW
Sbjct: 165 SQAARKPPFLAATCACVW 182

[Close]
BLAST of MELO3C026047 vs. ExPASy TrEMBL
Match: A0A5A7U7Q2 (2-oxoglutarate-dependent dioxygenase family protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1166G00230 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.8e-31
Identity = 72/78 (92.31%), Postives = 72/78 (92.31%), Query Frame = 0 

Query: 17  PATVGSRKVVARDCGCPATPLLLLSVSSDEAQPPPCSLAVHQIRVDRLPSSVAHASSCLP 76
           PATVGSRKVVAR CG PATPLLLLSVSSDEAQPPPCSLAVHQIRVD LPSS AHASS LP
Sbjct: 105 PATVGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP 164

Query: 77  SQAARKPPFLPATCACVW 95
           SQAARKPPFL ATCACVW
Sbjct: 165 SQAARKPPFLAATCACVW 182

[Close]
BLAST of MELO3C026047 vs. ExPASy TrEMBL
Match: A0A5D3BFV0 (2-oxoglutarate-dependent dioxygenase family protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00200 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.6e-30
Identity = 71/78 (91.03%), Postives = 71/78 (91.03%), Query Frame = 0 

Query: 17  PATVGSRKVVARDCGCPATPLLLLSVSSDEAQPPPCSLAVHQIRVDRLPSSVAHASSCLP 76
           PA VGSRKVVAR CG PATPLLLLSVSSDEAQPPPCSLAVHQIRVD LPSS AHASS LP
Sbjct: 105 PAAVGSRKVVARGCGSPATPLLLLSVSSDEAQPPPCSLAVHQIRVDCLPSSAAHASSYLP 164

Query: 77  SQAARKPPFLPATCACVW 95
           SQAARKPPFL ATCACVW
Sbjct: 165 SQAARKPPFLAATCACVW 182

The following BLAST results are available for this feature:
BLAST of MELO3C026047 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050407.11.4e-3092.312-oxoglutarate-dependent dioxygenase family protein isoform 1 [Cucumis melo var.... [more]
TYJ97997.15.4e-3091.032-oxoglutarate-dependent dioxygenase family protein isoform 1 [Cucumis melo var.... [more]
BLAST of MELO3C026047 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C026047 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U7Q26.8e-3192.312-oxoglutarate-dependent dioxygenase family protein isoform 1 OS=Cucumis melo va... [more]
A0A5D3BFV02.6e-3091.032-oxoglutarate-dependent dioxygenase family protein isoform 1 OS=Cucumis melo va... [more]
BLAST of MELO3C026047 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026047.1MELO3C026047.1mRNA