MELO3C026037 (gene) Melon (DHL92) v4

Overview
NameMELO3C026037
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCACTA en-spm transposon protein
Locationchr04: 11919738 .. 11919988 (+)
RNA-Seq ExpressionMELO3C026037
SyntenyMELO3C026037
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAAAAAAGAAAGATCAAGAACTCATCGGTGACGATATGGGTCTCCTTGTCGTGGGTCTCCGTCGCTATGGGTCTCCTCGCCATGGGTCTCCGTCTCCAAGAAGAAAGGATGTGGAGATGAGAAGAATGGGGTTAAGGCTGGGGATTTCGTCGTGCATCGTTCGTGAGGGGAGGGATTTTCAAGAAGGAATGGGGAGTCTGCGTGAAGAAGGAAAGAGAGAGATTTTGAAGAAGGAAAGTGAGGGATTTT

mRNA sequence

ACAAAAAAAGAAAGATCAAGAACTCATCGGTGACGATATGGGTCTCCTTGTCGTGGGTCTCCGTCGCTATGGGTCTCCTCGCCATGGGTCTCCGTCTCCAAGAAGAAAGGATGTGGAGATGAGAAGAATGGGGTTAAGGCTGGGGATTTCGTCGTGCATCGTTCGTGAGGGGAGGGATTTTCAAGAAGGAATGGGGAGTCTGCGTGAAGAAGGAAAGAGAGAGATTTTGAAGAAGGAAAGTGAGGGATTTT

Coding sequence (CDS)

ATGGGTCTCCTTGTCGTGGGTCTCCGTCGCTATGGGTCTCCTCGCCATGGGTCTCCGTCTCCAAGAAGAAAGGATGTGGAGATGAGAAGAATGGGGTTAAGGCTGGGGATTTCGTCGTGCATCGTTCGTGAGGGGAGGGATTTTCAAGAAGGAATGGGGAGTCTGCGTGAAGAAGGAAAGAGAGAGATTTTGAAGAAGGAAAGTGAGGGATTT

Protein sequence

MGLLVVGLRRYGSPRHGSPSPRRKDVEMRRMGLRLGISSCIVREGRDFQEGMGSLREEGKREILKKESEGF
Homology
BLAST of MELO3C026037 vs. NCBI nr
Match: KAA0034002.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK02801.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 1  MGLLVVGLRRYGSPRHGSPSPRRKDVEMRRMGLRLGISSCIVREGRDFQEGMGSLREEGK 60
          MG L VGL RYGSPRHGSPS RRKD+EMRRMGLRLG SSC+V    +     G++ +EGK
Sbjct: 1  MGYLAVGLHRYGSPRHGSPSSRRKDMEMRRMGLRLGFSSCVVVVVLE-----GNVHDEGK 60

Query: 61 REILKKESEG 71
            ILKKE+ G
Sbjct: 61 GGILKKENVG 65

BLAST of MELO3C026037 vs. NCBI nr
Match: KAA0033316.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 5.0e-04
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 1   MGLLVVGLRRYGSPRHGSPSPRRKDVEMRRMGLRLGISSCIV 43
           +GL VVGL RY     GSP  RRKD+EMRR+GLRLG S C++
Sbjct: 67  IGLFVVGLHRY-----GSPLSRRKDIEMRRIGLRLGFSLCVI 103

BLAST of MELO3C026037 vs. ExPASy TrEMBL
Match: A0A5D3BST2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1418G00060 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 1  MGLLVVGLRRYGSPRHGSPSPRRKDVEMRRMGLRLGISSCIVREGRDFQEGMGSLREEGK 60
          MG L VGL RYGSPRHGSPS RRKD+EMRRMGLRLG SSC+V    +     G++ +EGK
Sbjct: 1  MGYLAVGLHRYGSPRHGSPSSRRKDMEMRRMGLRLGFSSCVVVVVLE-----GNVHDEGK 60

Query: 61 REILKKESEG 71
            ILKKE+ G
Sbjct: 61 GGILKKENVG 65

BLAST of MELO3C026037 vs. ExPASy TrEMBL
Match: A0A5A7STJ5 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00940 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 1   MGLLVVGLRRYGSPRHGSPSPRRKDVEMRRMGLRLGISSCIV 43
           +GL VVGL RY     GSP  RRKD+EMRR+GLRLG S C++
Sbjct: 67  IGLFVVGLHRY-----GSPLSRRKDIEMRRIGLRLGFSLCVI 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0034002.12.6e-1364.29CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK02801.1 CACTA en-... [more]
KAA0033316.15.0e-0461.90transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcri... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BST21.3e-1364.29CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7STJ52.4e-0461.90Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026037.1MELO3C026037.1mRNA