MELO3C025964 (gene) Melon (DHL92) v4

Overview


Name	MELO3C025964
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	F-box protein SNE
Location	chr11: 13441716 .. 13442697 (-)
RNA-Seq Expression	MELO3C025964
Synteny	MELO3C025964

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACACGCGGACTTCGAGACGCACAGCAAGACAAATCCTATCTTAGACTTTTTCTCCTTGTTAATGAATTTCCATCGGATTGAGCTCTCTCTCTCTCTCTTTCCATCTCTCAATCTAATGTCAATTCCATATATATCAAAGACGCATAGAGTTTAAAGTTTCACCTACCAAATTCCTAATTACTCCAGGGCTTAAACATAAACAATGCAGAAGAATCACATACCAGAGCAGAACGAGAAGAAACGGAAGTTCCTAATCAACGACGATCTCGACATTCTGATCGAAATCCTCAAGCGGCTAGACGGACCATCCCTCGGCGTTGCGACCTGTGTCTGCCGGCTCTGGTGCACCATCGCTCGAAGTGAATCGGTGTGGGAACAAGTGTGCTTCCGTCATGTAAAATCGCCGCTTCCGTCGTCAGTGAAAACGGTGGTAGCGGCCTTGGGAGGGTACAAGAGGCTGTACATGGTTAGCATTCGACCGGTGCTGAGTCGACTCGGGTACTCGGACCTGGTGAGGCGAGTTTGGACTCAGGATGAGGTACAACTTTCACTTTCTCTGTTTTGTGTGGATTATTACGAGAGACTCACTGGGAGTGGAAGAATCGGCGGCGATGCGTCCGCATTGTCCCTCATGTTCCTGTGCAACACCGTCAACGTCTGATTCATCTCGATGCCTTTTTGTGATACTTTCTCCGCCGTCCGATCTGCAGACCAAATCTATATAAGAGAACCAAGCTCCATCTGGTGATTTTAGTCAAAAGGATTAAGATTAGCCTTAGCCTGGTACGAATATGAAATATGAAATATGATTATTTTTCTAATTATACACCCATTTTCTTAAATAAAAAACATAGAACTATTTTTTTTCTACATCTTGATTATTGCTGTTTGTTTCATCTTGTCTTTTTTATTTTTTTATTCATTATTTCTTGTAACAACCAATTTATATATGTAATCTTCGGGTCTTCTTTACTTCACTT

mRNA sequence

AAACACGCGGACTTCGAGACGCACAGCAAGACAAATCCTATCTTAGACTTTTTCTCCTTGTTAATGAATTTCCATCGGATTGAGCTCTCTCTCTCTCTCTTTCCATCTCTCAATCTAATGTCAATTCCATATATATCAAAGACGCATAGAGTTTAAAGTTTCACCTACCAAATTCCTAATTACTCCAGGGCTTAAACATAAACAATGCAGAAGAATCACATACCAGAGCAGAACGAGAAGAAACGGAAGTTCCTAATCAACGACGATCTCGACATTCTGATCGAAATCCTCAAGCGGCTAGACGGACCATCCCTCGGCGTTGCGACCTGTGTCTGCCGGCTCTGGTGCACCATCGCTCGAAGTGAATCGGTGTGGGAACAAGTGTGCTTCCGTCATGTAAAATCGCCGCTTCCGTCGTCAGTGAAAACGGTGGTAGCGGCCTTGGGAGGGTACAAGAGGCTGTACATGGTTAGCATTCGACCGGTGCTGAGTCGACTCGGGTACTCGGACCTGGTGAGGCGAGTTTGGACTCAGGATGAGGTACAACTTTCACTTTCTCTGTTTTGTGTGGATTATTACGAGAGACTCACTGGGAGTGGAAGAATCGGCGGCGATGCGTCCGCATTGTCCCTCATGTTCCTGTGCAACACCGTCAACGTCTGATTCATCTCGATGCCTTTTTGTGATACTTTCTCCGCCGTCCGATCTGCAGACCAAATCTATATAAGAGAACCAAGCTCCATCTGGTGATTTTAGTCAAAAGGATTAAGATTAGCCTTAGCCTGGTACGAATATGAAATATGAAATATGATTATTTTTCTAATTATACACCCATTTTCTTAAATAAAAAACATAGAACTATTTTTTTTCTACATCTTGATTATTGCTGTTTGTTTCATCTTGTCTTTTTTATTTTTTTATTCATTATTTCTTGTAACAACCAATTTATATATGTAATCTTCGGGTCTTCTTTACTTCACTT

Coding sequence (CDS)

ATGCAGAAGAATCACATACCAGAGCAGAACGAGAAGAAACGGAAGTTCCTAATCAACGACGATCTCGACATTCTGATCGAAATCCTCAAGCGGCTAGACGGACCATCCCTCGGCGTTGCGACCTGTGTCTGCCGGCTCTGGTGCACCATCGCTCGAAGTGAATCGGTGTGGGAACAAGTGTGCTTCCGTCATGTAAAATCGCCGCTTCCGTCGTCAGTGAAAACGGTGGTAGCGGCCTTGGGAGGGTACAAGAGGCTGTACATGGTTAGCATTCGACCGGTGCTGAGTCGACTCGGGTACTCGGACCTGGTGAGGCGAGTTTGGACTCAGGATGAGGTACAACTTTCACTTTCTCTGTTTTGTGTGGATTATTACGAGAGACTCACTGGGAGTGGAAGAATCGGCGGCGATGCGTCCGCATTGTCCCTCATGTTCCTGTGCAACACCGTCAACGTCTGA

Protein sequence

MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

Homology

[Close]

BLAST of MELO3C025964 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.1e-34
Identity = 81/154 (52.60%), Postives = 109/154 (70.78%), Query Frame = 0


Query: 6   IPEQNEKKRK------FLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQ 65
           + + N K+++      F IND  D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE+
Sbjct: 10  VEKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEE 69

Query: 66  VCFRHVKSPLPS-SVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLS 125
           +CFR V SP PS S+++VV+ALGGY+ LY + IRPVL+R     L + +WT+D++QLSLS
Sbjct: 70  LCFRQV-SPRPSLSLRSVVSALGGYRCLYFLCIRPVLAR-----LPKLLWTRDQLQLSLS 129

Query: 126 LFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV 153
           L+CV YYERL   G   GDA   SL+FL   VNV
Sbjct: 130 LYCVHYYERLY-VGAWLGDAPPSSLIFLRKPVNV 156

[Close]

BLAST of MELO3C025964 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-11
Identity = 41/134 (30.60%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 2   QKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVC 61
           + N   +  E++     N D +++ E+LK +D  +L +++CV ++W   A+ E +WE +C
Sbjct: 17  ETNKKMKSTEEEEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELIC 76

Query: 62  FRHVKS--PLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSL 121
            RH  +     + +++VV ALGG++RL+ + + P LS+       R  + +DE++L+LSL
Sbjct: 77  TRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP-LSKPN----PRARFGKDELKLTLSL 136

Query: 122 FCVDYYERLTGSGR 134
             + YYE+++ + R
Sbjct: 137 LSIRYYEKMSFTKR 145

[Close]

BLAST of MELO3C025964 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-10
Identity = 39/115 (33.91%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 23  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSP--LPSSVKTVVAAL 82
           D++ E+L+R +  +L  A CV R W  +A  E +WE  C R   +       ++ VV +L
Sbjct: 79  DLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAVVLSL 138

Query: 83  GGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEVQLSLSLFCVDYYERL 129
           GG++RL+ V IRP       V  + G      R+  +D+VQLSLSLF + +++ +
Sbjct: 139 GGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRL-GRDQVQLSLSLFSIGFFQNM 192

[Close]

BLAST of MELO3C025964 vs. NCBI nr
Match: XP_016903159.1 (PREDICTED: F-box protein SNE [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 1.4e-80
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

[Close]

BLAST of MELO3C025964 vs. NCBI nr
Match: KAA0060791.1 (F-box protein SNE [Cucumis melo var. makuwa] >TYK11951.1 F-box protein SNE [Cucumis melo var. makuwa])

HSP 1 Score: 307.8 bits (787), Expect = 5.4e-80
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEQNEKKRKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEQNEKKRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

[Close]

BLAST of MELO3C025964 vs. NCBI nr
Match: XP_004140002.1 (F-box protein SNE [Cucumis sativus] >XP_031743985.1 F-box protein SNE [Cucumis sativus] >KGN46603.1 hypothetical protein Csa_005230 [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 1.7e-78
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGEASALSLMFLCNTVNV 152

[Close]

BLAST of MELO3C025964 vs. NCBI nr
Match: XP_038902594.1 (F-box protein SNE [Benincasa hispida])

HSP 1 Score: 300.4 bits (768), Expect = 8.5e-78
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

[Close]

BLAST of MELO3C025964 vs. NCBI nr
Match: XP_022947535.1 (F-box protein SNE-like [Cucurbita moschata] >XP_022971122.1 F-box protein SNE-like [Cucurbita maxima] >XP_023534232.1 F-box protein SNE-like [Cucurbita pepo subsp. pepo] >KAG6604912.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026993.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 140/152 (92.11%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE V
Sbjct: 1   MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYS++VRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGR+ GDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRLSGDASALSLMFLCNTVNV 152

[Close]

BLAST of MELO3C025964 vs. ExPASy TrEMBL
Match: A0A1S4E4K7 (F-box protein SNE OS=Cucumis melo OX=3656 GN=LOC103502114 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 6.8e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

[Close]

BLAST of MELO3C025964 vs. ExPASy TrEMBL
Match: A0A5A7V4V6 (F-box protein SNE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001340 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.6e-80
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEQNEKKRKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEQNEKKRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

[Close]

BLAST of MELO3C025964 vs. ExPASy TrEMBL
Match: A0A0A0KAT5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G111930 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.3e-79
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGEASALSLMFLCNTVNV 152

[Close]

BLAST of MELO3C025964 vs. ExPASy TrEMBL
Match: A0A6J1I140 (F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111469889 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.3e-75
Identity = 140/152 (92.11%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE V
Sbjct: 1   MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYS++VRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGR+ GDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRLSGDASALSLMFLCNTVNV 152

[Close]

BLAST of MELO3C025964 vs. ExPASy TrEMBL
Match: A0A6J1G764 (F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111451371 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.3e-75
Identity = 140/152 (92.11%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE V
Sbjct: 1   MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYS++VRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 153
           CVDYYERLTGSGR+ GDASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRLSGDASALSLMFLCNTVNV 152

[Close]

BLAST of MELO3C025964 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-35
Identity = 81/154 (52.60%), Postives = 109/154 (70.78%), Query Frame = 0


Query: 6   IPEQNEKKRK------FLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQ 65
           + + N K+++      F IND  D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE+
Sbjct: 10  VEKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEE 69

Query: 66  VCFRHVKSPLPS-SVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLS 125
           +CFR V SP PS S+++VV+ALGGY+ LY + IRPVL+R     L + +WT+D++QLSLS
Sbjct: 70  LCFRQV-SPRPSLSLRSVVSALGGYRCLYFLCIRPVLAR-----LPKLLWTRDQLQLSLS 129

Query: 126 LFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV 153
           L+CV YYERL   G   GDA   SL+FL   VNV
Sbjct: 130 LYCVHYYERLY-VGAWLGDAPPSSLIFLRKPVNV 156

[Close]

BLAST of MELO3C025964 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-12
Identity = 41/134 (30.60%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 2   QKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVC 61
           + N   +  E++     N D +++ E+LK +D  +L +++CV ++W   A+ E +WE +C
Sbjct: 17  ETNKKMKSTEEEEIGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELIC 76

Query: 62  FRHVKS--PLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSL 121
            RH  +     + +++VV ALGG++RL+ + + P LS+       R  + +DE++L+LSL
Sbjct: 77  TRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP-LSKPN----PRARFGKDELKLTLSL 136

Query: 122 FCVDYYERLTGSGR 134
             + YYE+++ + R
Sbjct: 137 LSIRYYEKMSFTKR 145

The following BLAST results are available for this feature:

BLAST of MELO3C025964 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUB6	2.1e-34	52.60	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]
Q9STX3	1.4e-11	30.60	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	4.6e-10	33.91	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]

BLAST of MELO3C025964 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903159.1	1.4e-80	100.00	PREDICTED: F-box protein SNE [Cucumis melo]	[more]
KAA0060791.1	5.4e-80	99.34	F-box protein SNE [Cucumis melo var. makuwa] >TYK11951.1 F-box protein SNE [Cucu...	[more]
XP_004140002.1	1.7e-78	97.37	F-box protein SNE [Cucumis sativus] >XP_031743985.1 F-box protein SNE [Cucumis s...	[more]
XP_038902594.1	8.5e-78	96.71	F-box protein SNE [Benincasa hispida]	[more]
XP_022947535.1	1.5e-74	92.11	F-box protein SNE-like [Cucurbita moschata] >XP_022971122.1 F-box protein SNE-li...	[more]

BLAST of MELO3C025964 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E4K7	6.8e-81	100.00	F-box protein SNE OS=Cucumis melo OX=3656 GN=LOC103502114 PE=4 SV=1	[more]
A0A5A7V4V6	2.6e-80	99.34	F-box protein SNE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00...	[more]
A0A0A0KAT5	8.3e-79	97.37	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G111930 PE=4 ...	[more]
A0A6J1I140	7.3e-75	92.11	F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111469889 PE=4 SV=1	[more]
A0A6J1G764	7.3e-75	92.11	F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111451371 PE=4 SV=1	[more]

BLAST of MELO3C025964 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48170.1	1.5e-35	52.60	F-box family protein	[more]
AT4G24210.1	1.0e-12	30.60	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 22..60 e-value: 0.0073 score: 25.5
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 23..63 e-value: 1.5E-8 score: 34.4
None	No IPR available	GENE3D	1.20.1280.50		coord: 4..90 e-value: 1.5E-9 score: 39.6
IPR044184	F-box protein SNE	PANTHER	PTHR47750	F-BOX PROTEIN SNE	coord: 3..152
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 23..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025964.1	MELO3C025964.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009937	regulation of gibberellic acid mediated signaling pathway
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding