MELO3C025820 (gene) Melon (DHL92) v4

Overview


Name	MELO3C025820
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	ATP-dependent Clp protease ATP-binding subunit ClpA homolog
Location	chr04: 17772460 .. 17772648 (-)
RNA-Seq Expression	MELO3C025820
Synteny	MELO3C025820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATAACCTTAGATATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAACAAAGTGATGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAACATATTAAAACCTACCCTTGCAAGGGGTCAACTGCAGGTATTCTCGTAA

mRNA sequence

GTTATAACCTTAGATATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAACAAAGTGATGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAACATATTAAAACCTACCCTTGCAAGGGGTCAACTGCAGGTATTCTCGTAA

Coding sequence (CDS)

ATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAACAAAGTGATGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAACATATTAAAACCTACCCTTGCAAGGGGTCAACTGCAGGTATTCTCGTAA

Protein sequence

MGLLVAGTKYRGEFEERLKKLMEEIKQSDGAGAAEGAIDAANILKPTLARGQLQVFS

Homology

[Close]

BLAST of MELO3C025820 vs. NCBI nr
Match: TYK21918.1 (Chaperone protein ClpC1 chloroplastic [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 7.5e-19
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDGAGAAEGAIDAANILKPTLARGQLQV 56
           MGLLVAGTKYRGEFEER KKL+EEIKQSDGAGAA+GAIDAANILKPTLARGQLQV
Sbjct: 134 MGLLVAGTKYRGEFEERFKKLIEEIKQSDGAGAAKGAIDAANILKPTLARGQLQV 188

[Close]

BLAST of MELO3C025820 vs. NCBI nr
Match: RWW18688.1 (hypothetical protein GW17_00017312 [Ensete ventricosum])

HSP 1 Score: 99.8 bits (247), Expect = 8.3e-18
Identity = 55/70 (78.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 58
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKP 
Sbjct: 263 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 322

[Close]

BLAST of MELO3C025820 vs. NCBI nr
Match: RWW57586.1 (hypothetical protein BHE74_00035611 [Ensete ventricosum] >RZR86386.1 hypothetical protein BHM03_00013573 [Ensete ventricosum])

HSP 1 Score: 99.8 bits (247), Expect = 8.3e-18
Identity = 55/70 (78.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 58
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKP 
Sbjct: 265 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 324

[Close]

BLAST of MELO3C025820 vs. NCBI nr
Match: RRT78584.1 (hypothetical protein B296_00023768 [Ensete ventricosum])

HSP 1 Score: 99.8 bits (247), Expect = 8.3e-18
Identity = 55/70 (78.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 58
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKP 
Sbjct: 244 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 303

[Close]

BLAST of MELO3C025820 vs. NCBI nr
Match: RWW26945.1 (hypothetical protein GW17_00008645 [Ensete ventricosum])

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 53/68 (77.94%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 56
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKP 
Sbjct: 284 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 343

[Close]

BLAST of MELO3C025820 vs. ExPASy Swiss-Prot
Match: P31541 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CD4A PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.0e-19
Identity = 52/67 (77.61%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKP 
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 397

[Close]

BLAST of MELO3C025820 vs. ExPASy Swiss-Prot
Match: P31542 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CD4B PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.0e-19
Identity = 52/67 (77.61%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKP 
Sbjct: 336 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 395

[Close]

BLAST of MELO3C025820 vs. ExPASy Swiss-Prot
Match: Q2QVG9 (Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLPC2 PE=2 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 6.0e-19
Identity = 52/67 (77.61%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKP 
Sbjct: 333 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 392

[Close]

BLAST of MELO3C025820 vs. ExPASy Swiss-Prot
Match: P35100 (Chaperone protein ClpC, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.0e-19
Identity = 52/67 (77.61%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKP 
Sbjct: 336 MGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVHTLIGAGAAEGAIDAANILKPA 395

[Close]

BLAST of MELO3C025820 vs. ExPASy Swiss-Prot
Match: Q9FI56 (Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPC1 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-18
Identity = 51/67 (76.12%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEI+QSD             GAGAAEGAIDAANILKP 
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 397

[Close]

BLAST of MELO3C025820 vs. ExPASy TrEMBL
Match: A0A5D3DEP3 (Chaperone protein ClpC1 chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00600 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.6e-19
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDGAGAAEGAIDAANILKPTLARGQLQV 56
           MGLLVAGTKYRGEFEER KKL+EEIKQSDGAGAA+GAIDAANILKPTLARGQLQV
Sbjct: 134 MGLLVAGTKYRGEFEERFKKLIEEIKQSDGAGAAKGAIDAANILKPTLARGQLQV 188

[Close]

BLAST of MELO3C025820 vs. ExPASy TrEMBL
Match: A0A427AQR5 (Clp R domain-containing protein OS=Ensete ventricosum OX=4639 GN=B296_00023768 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.0e-18
Identity = 55/70 (78.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 58
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKP 
Sbjct: 244 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 303

[Close]

BLAST of MELO3C025820 vs. ExPASy TrEMBL
Match: A0A444F7S8 (Clp R domain-containing protein OS=Ensete ventricosum OX=4639 GN=GW17_00017312 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.0e-18
Identity = 55/70 (78.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 58
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKP 
Sbjct: 263 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 322

[Close]

BLAST of MELO3C025820 vs. ExPASy TrEMBL
Match: A0A427A9Q1 (Clp R domain-containing protein OS=Ensete ventricosum OX=4639 GN=B296_00003743 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.6e-17
Identity = 53/68 (77.94%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 56
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKP 
Sbjct: 343 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 402

[Close]

BLAST of MELO3C025820 vs. ExPASy TrEMBL
Match: A0A2G2VGJ6 (Clp R domain-containing protein OS=Capsicum baccatum OX=33114 GN=CQW23_28406 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.6e-17
Identity = 53/68 (77.94%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 56
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAIDAANILKP 
Sbjct: 420 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 479

[Close]

BLAST of MELO3C025820 vs. TAIR 10
Match: AT3G48870.1 (Clp ATPase )

HSP 1 Score: 92.8 bits (229), Expect = 9.5e-20
Identity = 51/67 (76.12%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEI+QSD             GAGAAEGAIDAANILKP 
Sbjct: 359 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 418

[Close]

BLAST of MELO3C025820 vs. TAIR 10
Match: AT3G48870.2 (Clp ATPase )

HSP 1 Score: 92.8 bits (229), Expect = 9.5e-20
Identity = 51/67 (76.12%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEI+QSD             GAGAAEGAIDAANILKP 
Sbjct: 328 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 387

[Close]

BLAST of MELO3C025820 vs. TAIR 10
Match: AT5G50920.1 (CLPC homologue 1 )

HSP 1 Score: 92.8 bits (229), Expect = 9.5e-20
Identity = 51/67 (76.12%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIDAANILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEI+QSD             GAGAAEGAIDAANILKP 
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 397

[Close]

BLAST of MELO3C025820 vs. TAIR 10
Match: AT1G74310.1 (heat shock protein 101 )

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-12
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD--------------GAGAAEGAIDAANILKP 55
           MG LVAG KYRGEFEERLK +++E++ ++              GAG  EG++DAAN+ KP
Sbjct: 243 MGALVAGAKYRGEFEERLKSVLKEVEDAEGKVILFIDEIHLVLGAGKTEGSMDAANLFKP 302

[Close]

BLAST of MELO3C025820 vs. TAIR 10
Match: AT5G15450.1 (casein lytic proteinase B3 )

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-11
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD--------------GAGAAEGAIDAANILKP 55
           MG L+AG KYRGEFE+RLK +++E+  S+              GAGA  GA+DA N+LKP
Sbjct: 318 MGALIAGAKYRGEFEDRLKAVLKEVTDSEGQIILFIDEIHTVVGAGATNGAMDAGNLLKP 377

The following BLAST results are available for this feature:

BLAST of MELO3C025820 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21918.1	7.5e-19	94.55	Chaperone protein ClpC1 chloroplastic [Cucumis melo var. makuwa]	[more]
RWW18688.1	8.3e-18	78.57	hypothetical protein GW17_00017312 [Ensete ventricosum]	[more]
RWW57586.1	8.3e-18	78.57	hypothetical protein BHE74_00035611 [Ensete ventricosum] >RZR86386.1 hypothetica...	[more]
RRT78584.1	8.3e-18	78.57	hypothetical protein B296_00023768 [Ensete ventricosum]	[more]
RWW26945.1	1.6e-16	77.94	hypothetical protein GW17_00008645 [Ensete ventricosum]	[more]

BLAST of MELO3C025820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31541	6.0e-19	77.61	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic ...	[more]
P31542	6.0e-19	77.61	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic ...	[more]
Q2QVG9	6.0e-19	77.61	Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
P35100	6.0e-19	77.61	Chaperone protein ClpC, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
Q9FI56	1.3e-18	76.12	Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPC1 ...	[more]

BLAST of MELO3C025820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DEP3	3.6e-19	94.55	Chaperone protein ClpC1 chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A427AQR5	4.0e-18	78.57	Clp R domain-containing protein OS=Ensete ventricosum OX=4639 GN=B296_00023768 P...	[more]
A0A444F7S8	4.0e-18	78.57	Clp R domain-containing protein OS=Ensete ventricosum OX=4639 GN=GW17_00017312 P...	[more]
A0A427A9Q1	7.6e-17	77.94	Clp R domain-containing protein OS=Ensete ventricosum OX=4639 GN=B296_00003743 P...	[more]
A0A2G2VGJ6	7.6e-17	77.94	Clp R domain-containing protein OS=Capsicum baccatum OX=33114 GN=CQW23_28406 PE=...	[more]

BLAST of MELO3C025820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48870.1	9.5e-20	76.12	Clp ATPase	[more]
AT3G48870.2	9.5e-20	76.12	Clp ATPase	[more]
AT5G50920.1	9.5e-20	76.12	CLPC homologue 1	[more]
AT1G74310.1	1.9e-12	51.47	heat shock protein 101	[more]
AT5G15450.1	1.6e-11	48.53	casein lytic proteinase B3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 11..31
None	No IPR available	PANTHER	PTHR11638	ATP-DEPENDENT CLP PROTEASE	coord: 1..55
None	No IPR available	PANTHER	PTHR11638:SF169	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC	coord: 1..55
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..57 e-value: 1.4E-11 score: 46.4
IPR018368	ClpA/B, conserved site 1	PROSITE	PS00870	CLPAB_1	coord: 39..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025820.1	MELO3C025820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding