MELO3C025653.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C025653.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPrecursor of CEP13
Locationchr07: 3871803 .. 3872072 (+)
RNA-Seq ExpressionMELO3C025653.jh1
SyntenyMELO3C025653.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGCAGAAAGTTCATAATGGTGGCATTGTTGGTGGTGGCCTCGGTGCTATGCCAAGCACACATGAGCTTGGGAATAAGAAAGTTATCCAACAAGGAAATGAAGATGGTTCCAATGGGGGTTGATGTTAATTATATGCTTCTCGGCGCTCTTCCGAAAGGCCCAACGCCCCCATCTGCCCCTAGTGAGCGAGGCAACCCTGCTCCTTTTAGTGATGGTGATCGAGTCTTGGTATCTGCTCCGAGTCCCGGAATTGGTCATCGTTAA

mRNA sequence

ATGGGTAGCAGAAAGTTCATAATGGTGGCATTGTTGGTGGTGGCCTCGGTGCTATGCCAAGCACACATGAGCTTGGGAATAAGAAAGTTATCCAACAAGGAAATGAAGATGGTTCCAATGGGGGTTGATGTTAATTATATGCTTCTCGGCGCTCTTCCGAAAGGCCCAACGCCCCCATCTGCCCCTAGTGAGCGAGGCAACCCTGCTCCTTTTAGTGATGGTGATCGAGTCTTGGTATCTGCTCCGAGTCCCGGAATTGGTCATCGTTAA

Coding sequence (CDS)

ATGGGTAGCAGAAAGTTCATAATGGTGGCATTGTTGGTGGTGGCCTCGGTGCTATGCCAAGCACACATGAGCTTGGGAATAAGAAAGTTATCCAACAAGGAAATGAAGATGGTTCCAATGGGGGTTGATGTTAATTATATGCTTCTCGGCGCTCTTCCGAAAGGCCCAACGCCCCCATCTGCCCCTAGTGAGCGAGGCAACCCTGCTCCTTTTAGTGATGGTGATCGAGTCTTGGTATCTGCTCCGAGTCCCGGAATTGGTCATCGTTAA

Protein sequence

MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPSAPSERGNPAPFSDGDRVLVSAPSPGIGHR
Homology
BLAST of MELO3C025653.jh1 vs. NCBI nr
Match: KAA0066754.1 (hypothetical protein E6C27_scaffold271G00930 [Cucumis melo var. makuwa] >TYK27901.1 hypothetical protein E5676_scaffold384G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (444), Expect = 3.89e-55
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0

Query: 1  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 60
          MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS
Sbjct: 2  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 61

Query: 61 APSERGNPAPFSDGDRVLVSAPSPGIGHR 89
          APSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 62 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90

BLAST of MELO3C025653.jh1 vs. NCBI nr
Match: KGN55050.1 (hypothetical protein Csa_012928 [Cucumis sativus])

HSP 1 Score: 164 bits (415), Expect = 1.03e-50
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0

Query: 1  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 60
          MGS+K IMVALLVVA VL QAHMSLGIRKLSNKEMKMVP+GVDVNYMLLGALPKGPTPPS
Sbjct: 2  MGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPS 61

Query: 61 APSERGNPAPFSDGDRVLVSAPSPGIGHR 89
          APSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 62 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90

BLAST of MELO3C025653.jh1 vs. NCBI nr
Match: KAG6607932.1 (hypothetical protein SDJN03_01274, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 5.53e-16
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 60
          M ++KF M A L +A +LCQ H +L IR   +K+ K+  MGV    MLLG+LP+GP PPS
Sbjct: 1  MCTKKFTMAACLFLAFLLCQPHTTLAIRSFYHKDTKLPSMGVVDFDMLLGSLPRGPIPPS 60

Query: 61 APSERGNPAPFSDG 74
          APS R NPAPFS G
Sbjct: 61 APSNRENPAPFSGG 74

BLAST of MELO3C025653.jh1 vs. NCBI nr
Match: DAD48182.1 (TPA_asm: hypothetical protein HUJ06_018119 [Nelumbo nucifera])

HSP 1 Score: 51.6 bits (122), Expect = 4.22e-06
Identity = 31/70 (44.29%), Postives = 38/70 (54.29%), Query Frame = 0

Query: 28 RKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPSAPSERGNPA---------PFSDGDRVL 87
          RKL N E K        + +LL ALPKGP PPS PS++G+             S  DR+L
Sbjct: 25 RKLLNMEKKKEIPASLADSLLLSALPKGPIPPSGPSKKGHAMIVDQKLFSLHLSRADRIL 84

BLAST of MELO3C025653.jh1 vs. NCBI nr
Match: KAF8413711.1 (hypothetical protein HHK36_001703 [Tetracentron sinense])

HSP 1 Score: 49.7 bits (117), Expect = 2.94e-05
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 24  SLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPSAPSERGNPA---------PFSDG 83
           +L  RKL + E K   + ++ + + L ALPKG  PPS+PS++G+           P +  
Sbjct: 31  TLEARKLLSMETKKKALSLE-DSLFLSALPKGTIPPSSPSKKGHAMIINEKLFALPLASI 90

Query: 84  DRVLVSAPSPGIGH 88
           DR+L S PSPGIGH
Sbjct: 91  DRILRSVPSPGIGH 103

BLAST of MELO3C025653.jh1 vs. ExPASy Swiss-Prot
Match: Q9FZ54 (Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.7e-05
Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 0

Query: 16 SVLCQAHMSLGIRKLSNKEMK-MVPMGVDVNYMLLGALPKGPTPPSAPSERGNPAPFSDG 75
          S++C   + +G    S++  K +VP G     + L ALPKG  PPS PS++G+ +P  D 
Sbjct: 9  SMICLLILIVGFVLQSSQARKVLVPYGTSKG-LFLSALPKGNVPPSGPSDKGHTSPPDDT 68

Query: 76 D------------RVLVSAPSPGIGH 89
          D            R L S PSPG+GH
Sbjct: 69 DQRMVPENSPEIYRRLESVPSPGVGH 93

BLAST of MELO3C025653.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VHE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00860 PE=4 SV=1)

HSP 1 Score: 175 bits (444), Expect = 1.88e-55
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0

Query: 1  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 60
          MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS
Sbjct: 2  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 61

Query: 61 APSERGNPAPFSDGDRVLVSAPSPGIGHR 89
          APSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 62 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90

BLAST of MELO3C025653.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KZH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 5.01e-51
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0

Query: 1  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPS 60
          MGS+K IMVALLVVA VL QAHMSLGIRKLSNKEMKMVP+GVDVNYMLLGALPKGPTPPS
Sbjct: 2  MGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEMKMVPIGVDVNYMLLGALPKGPTPPS 61

Query: 61 APSERGNPAPFSDGDRVLVSAPSPGIGHR 89
          APSERGNPAPFSDGDRVLVSAPSPGIGHR
Sbjct: 62 APSERGNPAPFSDGDRVLVSAPSPGIGHR 90

BLAST of MELO3C025653.jh1 vs. ExPASy TrEMBL
Match: A0A5B7APD8 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_027968 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.75e-07
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 0

Query: 10  ALLVVASVLCQAHMSLGIRKLSNKEMKMVPMGVDVNYMLLGALPKGPTPPSAPSERGNPA 69
           +L+ +  ++C A  SL  RKL + E KM    ++ + ++L A+PKG TPPS+PS +G+  
Sbjct: 43  SLIFILVLICVAPPSLEARKLLSME-KMKAPSLEDSSLVLSAIPKGATPPSSPSGKGHKM 102

Query: 70  PFSDG---------DRVLVSAPSPGIGHR 89
             ++          DR+L S PSPGIGH 
Sbjct: 103 VINERLFTLHLAHIDRILQSVPSPGIGHN 130

BLAST of MELO3C025653.jh1 vs. ExPASy TrEMBL
Match: A0A6N2L486 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113295 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 9.02e-06
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 47 MLLGALPKGPTPPSAPSERGNPAPF-SDGDRVLVSA-PSPGIGH 88
          ++L  LPKGP PPS+PS  GNP P  S+ +R+LVS+ PSPG+G+
Sbjct: 40 LVLNVLPKGPAPPSSPSGGGNPIPILSETERILVSSNPSPGVGN 83

BLAST of MELO3C025653.jh1 vs. ExPASy TrEMBL
Match: A0A178WKL7 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g17760 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.26e-04
Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 0

Query: 16 SVLCQAHMSLGIRKLSNKEMK-MVPMGVDVNYMLLGALPKGPTPPSAPSERGNPAPFSDG 75
          S++C   + +G    S++  K +VP G     + L ALPKG  PPS PS++G+ +P  D 
Sbjct: 9  SMICLLILIVGFVLQSSQARKVLVPYGTSKG-LFLSALPKGNVPPSGPSDKGHTSPPDDT 68

Query: 76 DRVLV------------SAPSPGIGH 88
          D+ +V            S PSPG+GH
Sbjct: 69 DQRMVPENSPEIYRRLESVPSPGVGH 93

BLAST of MELO3C025653.jh1 vs. TAIR 10
Match: AT1G16950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; Has 17 Blast hits to 17 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 5.4e-06
Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 0

Query: 16 SVLCQAHMSLGIRKLSNKEMK-MVPMGVDVNYMLLGALPKGPTPPSAPSERGNPAPFSDG 75
          S++C   + +G    S++  K +VP G     + L ALPKG  PPS PS++G+ +P  D 
Sbjct: 9  SMICLLILIVGFVLQSSQARKVLVPYGTSKG-LFLSALPKGNVPPSGPSDKGHTSPPDDT 68

Query: 76 D------------RVLVSAPSPGIGH 89
          D            R L S PSPG+GH
Sbjct: 69 DQRMVPENSPEIYRRLESVPSPGVGH 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0066754.13.89e-55100.00hypothetical protein E6C27_scaffold271G00930 [Cucumis melo var. makuwa] >TYK2790... [more]
KGN55050.11.03e-5094.38hypothetical protein Csa_012928 [Cucumis sativus][more]
KAG6607932.15.53e-1655.41hypothetical protein SDJN03_01274, partial [Cucurbita argyrosperma subsp. sorori... [more]
DAD48182.14.22e-0644.29TPA_asm: hypothetical protein HUJ06_018119 [Nelumbo nucifera][more]
KAF8413711.12.94e-0540.54hypothetical protein HHK36_001703 [Tetracentron sinense][more]
Match NameE-valueIdentityDescription
Q9FZ547.7e-0537.21Precursor of CEP13 OS=Arabidopsis thaliana OX=3702 GN=CEP13 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A5A7VHE01.88e-55100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KZH35.01e-5194.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1[more]
A0A5B7APD82.75e-0738.20Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_027968... [more]
A0A6N2L4869.02e-0656.82Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113295 PE=4 SV=... [more]
A0A178WKL71.26e-0436.05(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g... [more]
Match NameE-valueIdentityDescription
AT1G16950.15.4e-0637.21unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025653.jh1.t1MELO3C025653.jh1.t1mRNA