MELO3C025579 (gene) Melon (DHL92) v4

Overview
NameMELO3C025579
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionProtein Ycf2-like
Locationchr12: 12774768 .. 12778937 (-)
RNA-Seq ExpressionMELO3C025579
SyntenyMELO3C025579
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCAAATCGATGAGAAAACATCCAGTAGTACGAAGCCATTATCGGTTTCTTGAAATCGCATGGATTCCAGAATTCACAGACCGCCAAGTGGGTCTCAAGACAACCTTCGGTTCTTCAATCCAAAGTATCCACCAATCTGAAGCCTAAATTTGAGTTCCTCCAGGTAATCGGGTTCGATGATCCTTTACTTCCTAAGCTAATCCTATCAAACCCTACGCTTCTTTGCAGGAGCTTCTAATCTGAAACATCATTTGTTTTCCTTCTGTTCTTCTTCACAGGGTTGCACAAATTTCTGGCATACTGCTTCTAATATGAAACCATCATTGTTTTTCTTGAAGTAAATTCTTGAATAGGATGAAAAAGCAGCTGCTTCTTTGTTGTTCTTCGTGGCTTCTATTTTTTTATTTTAAGGGTATTTTAAAATCTAACATTGATTTATTGGTCAACGAAGGATGTTGCAGATTTCTGTTTTAGCACTGCAAAGGTACCCTAACTTGTTTCTGAACTAGAAAATGGACATATATTTCGTTTAGCTTCTCCTTTTTTGGGTATTTTTTGGGTATTTTTTGTGTTTCTTTTATTGTTAGCAACTTCGTGTTTTTTTTCCCTTAAAAATGATTTTGGTTGACCTCTCTTTAAAAAAAATTAAGGTATGAGAACCTTTAAAGCCTTTTGATCAGTTAAACTTCAAACTGAGAAGAAAAATCCTCTTTGGAATGCTATTTGTGCTACTAGTTGAGTATCCTGGAATTATATTATGGATGGACACTTTGGGCTGTACATATATTTTGTTTATATTATACATAGATGGAAAGTTTTTCCTATTGTTAGAAGTTTTGGGCTGCACATATATGCTGTAATTAAGTGGGTAATGACCAACTATATGTATTGTTTATTGATATATACAATTTGTTAAAATATAATTAGTTTTTTTATGGAAAGTTTAAGTTGATTTAATTTTTCAATTAATATGTAGTTTAGCACATTTGTGTACTCTCTTGCTTTACTTATGTTTGTCATTGTTGGACTTCAAAATAGGTGTAGGATAAATAATATGGATATTTTAAATTATATAATTTTTCATTTGAAAATTAGAAAAAAATTCTTGACATGTAAAGTGTGTCAAGAATAAACAAATTCTTGACGTGTAAAAAATGTCAACTAATCTTATATATTTGATGTTTATAAACTGTCAATTATAATTTTACTTAAAAGTCGTCAAACGAAAAACCTTTTATTCTTGACATTGGATTACTTGACGTATAAAAAATGTCAAGTAATCTTATAAATGTCAAGTAAATCCCCCTTATTTTTTATAATGGATTACTTTACACTTACTACTTGACACATTGAAAAGTGTCAAGTAAATGTAAAGTAAACCCTTTTTTGGAATTAGTTACTCATAATGATAATCTACATATCTTGATAGAGGAGGTGCCAAAGATGAGAGCCAAATATAAATCTTTTCAGCCTCTGGGTTTGATTTCTTTATGTAGTTGTAAATTAGTTTTGATTATAATTTTCGTTGTTCTTCATGTGAATTTGTTGATTGTTTTGCTCACTCTCTTAGATTATGGATTAATTATGATTCATTTGCATACAAAGAGCACAATAATAGATAAGATCAAAGAGAATCTTGAAGATAGGTTGACCAATAAATTTAGAGGGAGAATATTTTGGCATTTTCTAGAATTCTCCATGTCAAACCAATCCTCCCAACTATTACTGTAACTTATGCAAAGAATGTGCAAGCCTAAATCAACTAGCCTACTACATTTTCTAATAATAGGGAGAGTACTTAAGTTTAGGTTGAAAGACTTTTCCCTTATTACTGGTTTAAATTGCCATGAGATTTTCAAGATTAACAAAGAGGATATAAAGGGGGATGGATGATCGAAAGGAGTATATTTTGAAAACCTGAAAACAGTAACAAGGCAGTACTTGAACGTTATATTCAACACAAGCACTGTTGGAACATATGAAGATCGAATAAAAATGACAAAATAGTACTTCCTTCATAGCTTTTTGATTCATAGACAAGAAAGTTTAATTATAGAGTGGGATCACATCCTTATGATAGACGATGAAATCTTTGACGGGTATCTGTGTGGAGAGTTGCTTTTGACCCTTCTAGTAGAGTTCATGAATAGGGTACCTTATGTGTAGCAAGGGGAAAATGGGAATTTCGGTGGAGGCTTTATTTTCCCATTCTTGTTTGGTCTTACAAGGTAATCCTAACATTGAGTACCTCACCCAACTACGTTAGAGGATTTGAAATAAAGTCCCTAGAATTATTAATTGGGCAGTCGACATAGCCAAAATAGGACTTGAAACAGAAGGTCTTCGATTCAATAATGTTATGTAAATCTTCTTGTAATAGTTTTAATATTTGTAACAGTTTTAATATTTATAAAATATTTTTTTTCTTTTAGAAACAGTTGAAGTGTCCCTCATGCTCGCTACACCCAATGGAGTGGGCATGCTATACTTCGCATCATTCTTTGAGGAGAAAAAATATACTCTAAGAAGGAGAAGATCAGCATAGAAAGAGCCAACATTCTGACCGCGTTGCTCATGTTTTGCTGAATAGAGACATGCCCTCTACAAAATCAGATTGATGGGCTGAAAAGAATTGTAGAAAACCCAAGAGATGATGGAGAAGAGTATGGAGGGTATTCTTGAATTTATTAAATCTGTAGATTTGAAAATGAATAAAAAGTTTGAAGAACTAGGACATAAATTGAATGAAATAATAGAAGAAATCAAGAGATGATGGAGAAGAGTATGGAGGGTATTCTTGAATTTATTAAATCTGTAGAGTTGAAAATAAATAAAAAGTTTGAAGAACTAGGACATAAATTGAATGAAATAATAGAAGAAATCAATAGCCAGCAACGTAGTTCTTCGGGTGCCCAAGAAACCATGCTTATAAGGTAAGCATATTATAAACTGAAATTTTATTTTCTGATAGATTGTATTTCAATATTATGTGTACATGTAACAGATTGTTAAAATACACTGTATTTGGTATGCAGGGAGCAAAAGCCTTCAAGGAGCAGCACCTTAATAAGGTAAAAAAGGATCGAGAAGAAGATGAATATTTGAACTTGGATTTGAGCAATTCAAAAGTGTTTAGTACAAAAGATGAAGACGAAGAAGGAAAGGGAAACATAGTTGAGGGCAAGTTGGTAGGCAAACTAGATTGAACAAATCAGGAACACCACCTACTACCGAAGGACAAGATGGAGATCGCTCATCGTGTAAGTTAAAGAAAAAAAATCAACTATAGTACATGTTATAATTGTTTATAATACATCTTATAAACAAACTAATATATGTACATAATTGTAATAGGGCACAAAAGAAATTGAGGAAGAAATAAATAGGCTCATACAGTCAATCGACAAAAATGTTGTATGCGACAAAATGAAGAAAAAAGAAGATAGAAGGAAAATGGTATAGTATTTGATGATTGACAGATGTTTGTTATAATGAATGACTTAGTTTTAAGAAGTGTCTATCTCAATTACATGATATTTGTAACTCACTTTTTGGAATAAGATTTGTGATAATCAATGATGTGTATATTTTCTTTGTTATTTACAAATTGGACCTGTTTGTTATCATTAGTGATTTATAACTTCAAAGAATTTTGTATTTGAATTCTATAGACTTTATTTGATTCGAAGTTTGATGAGTATAGTACTAAATGATTGACATATGTTTGTTATAATGAATGACTTACTTTTAAAAAGTGTAGATTCCAATGATAGGGTATTTGTAACCCTGACTACATGAGATAGGTTGTTGGGATCATCAATGATGTGTACTTTTTTTGTTTTGTTCTTTACAGATTGGGTCTATTTGTTATTATGAGTATTTTGACTTCTAGAGACTTTATTTGGTTCAAACTTTGATTAGTACTTTACGAGGATTTGAAATACTAGTAACTAATTCTTGAGAAATACTAAAGTATGCACATGGTCAATCTTCATTGAATTCAACCCAAGAATAATGACGAATGTGCAATCAACCTTTGACAGAACTAAAGATCGACCATAAATGGCTAAGGTAATAACATACTTAATATGAATGTGAGGTCCACGATTTCGATAATGGTATACAGTTAAACTTTTGTTTGCCAACAACTTATAGATTAAAGGAAAAATG

mRNA sequence

TCCAAATCGATGAGAAAACATCCAGTAGTACGAAGCCATTATCGGTTTCTTGAAATCGCATGGATTCCAGAATTCACAGACCGCCAAGTGGGTCTCAAGACAACCTTCGGTTCTTCAATCCAAAGTATCCACCAATCTGAAGCCTAAATTTGAGTTCCTCCAGGGTTGCACAAATTTCTGGCATACTGCTTCTAATATGAAACCATCATTGTTTTTCTTGAAGTAAATTCTTGAATAGGATGAAAAAGCAGCTGCTTCTTTGTTGTTCTTCGTGGCTTCTATTTTTTTATTTTAAGGGTATTTTAAAATCTAACATTGATTTATTGGTCAACGAAGGATGTTGCAGATTTCTGTTTTAGCACTGCAAAGAAACAGTTGAAGTGTCCCTCATGCTCGCTACACCCAATGGAGTGGGCATGCTATACTTCGCATCATTCTTTGAGGAGAAAAAATATACTCTAAGAAGGAGAAGATCAGCATAGAAAGAGCCAACATTCTGACCGCGTTGCTCATGTTTTGCTGAATAGAGACATGCCCTCTACAAAATCAGATTGATGGGCTGAAAAGAATTGTAGAAAACCCAAGAGATGATGGAGAAGAGTATGGAGGGTATTCTTGAATTTATTAAATCTGTAGATTTGAAAATGAATAAAAAGTTTGAAGAACTAGGACATAAATTGAATGAAATAATAGAAGAAATCAAGAGATGATGGAGAAGAGTATGGAGGGTATTCTTGAATTTATTAAATCTGTAGAGTTGAAAATAAATAAAAAGTTTGAAGAACTAGGACATAAATTGAATGAAATAATAGAAGAAATCAATAGCCAGCAACGTAGTTCTTCGGGTGCCCAAGAAACCATGCTTATAAGGGAGCAAAAGCCTTCAAGGAGCAGCACCTTAATAAGGTAAAAAAGGATCGAGAAGAAGATGAATATTTGAACTTGGATTTGAGCAATTCAAAAGTGTTTAGTACAAAAGATGAAGACGAAGAAGGAAAGGGAAACATAGTTGAGGGCAAGTTGGTAGGCAAACTAGATTGAACAAATCAGGAACACCACCTACTACCGAAGGACAAGATGGAGATCGCTCATCGTGTAAGTTAAAGAAAAAAAATCAACTATAGTACATGTTATAATTGTTTATAATACATCTTATAAACAAACTAATATATGTACATAATTGTAATAGGGCACAAAAGAAATTGAGGAAGAAATAAATAGGCTCATACAGTCAATCGACAAAAATGTTGTATGCGACAAAATGAAGAAAAAAGAAGATAGAAGGAAAATGGTATAGTATTTGATGATTGACAGATGTTTGTTATAATGAATGACTTAGTTTTAAGAAGTGTCTATCTCAATTACATGATATTTGTAACTCACTTTTTGGAATAAGATTTGTGATAATCAATGATGTGTATATTTTCTTTGTTATTTACAAATTGGACCTGTTTGTTATCATTAGTGATTTATAACTTCAAAGAATTTTGTATTTGAATTCTATAGACTTTATTTGATTCGAAGTTTGATGAGTATAGTACTAAATGATTGACATATGTTTGTTATAATGAATGACTTACTTTTAAAAAGTGTAGATTCCAATGATAGGGTATTTGTAACCCTGACTACATGAGATAGGTTGTTGGGATCATCAATGATGTGTACTTTTTTTGTTTTGTTCTTTACAGATTGGGTCTATTTGTTATTATGAGTATTTTGACTTCTAGAGACTTTATTTGGTTCAAACTTTGATTAGTACTTTACGAGGATTTGAAATACTAGTAACTAATTCTTGAGAAATACTAAAGTATGCACATGGTCAATCTTCATTGAATTCAACCCAAGAATAATGACGAATGTGCAATCAACCTTTGACAGAACTAAAGATCGACCATAAATGGCTAAGATTAAAGGAAAAATG

Coding sequence (CDS)

ATGATGGAGAAGAGTATGGAGGGTATTCTTGAATTTATTAAATCTGTAGAGTTGAAAATAAATAAAAAGTTTGAAGAACTAGGACATAAATTGAATGAAATAATAGAAGAAATCAATAGCCAGCAACGTAGTTCTTCGGGTGCCCAAGAAACCATGCTTATAAGGGAGCAAAAGCCTTCAAGGAGCAGCACCTTAATAAGGTAA

Protein sequence

MMEKSMEGILEFIKSVELKINKKFEELGHKLNEIIEEINSQQRSSSGAQETMLIREQKPSRSSTLIR
Homology
[Close]
BLAST of MELO3C025579 vs. NCBI nr
Match: KAA0054652.1 (protein Ycf2-like [Cucumis melo var. makuwa] >TYK08610.1 protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-10
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0 

Query: 2   MEKSMEGILEFIKSVELKINKKFEELGHKLNEIIEEINSQQRSSSGAQET 52
           MEKSM+GIL+FIK VELK+NKKFE+LG KLN IIEEI SQQ SSSGAQET
Sbjct: 155 MEKSMKGILKFIKPVELKMNKKFEQLGQKLNGIIEEIKSQQPSSSGAQET 204

[Close]
BLAST of MELO3C025579 vs. NCBI nr
Match: KAA0033908.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 2  MEKSMEGILEFIKSVELKINKKFEELGHKLNEIIEEINSQQRSSSGAQET 52
          ME SMEGILEF+KSVELK+N +FEELG K+N IIE I SQQ SSSGAQ T
Sbjct: 24 METSMEGILEFLKSVELKMNTRFEELGQKMNGIIEAIRSQQSSSSGAQYT 73

[Close]
BLAST of MELO3C025579 vs. NCBI nr
Match: TYK01290.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 2   MEKSMEGILEFIKSVELKINKKFEELGHKLNEIIEEINSQQRSSSGAQET 52
           ME SMEGILEF+KSVELK+N +FEELG K+N IIE I SQQ SSSGAQ T
Sbjct: 173 METSMEGILEFLKSVELKMNTRFEELGQKMNGIIEAIKSQQSSSSGAQYT 222

[Close]
BLAST of MELO3C025579 vs. NCBI nr
Match: KAA0041493.1 (protein Ycf2-like [Cucumis melo var. makuwa] >TYK24367.1 protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 2   MEKSMEGILEFIKSVELKINKKFEELGHKLNEIIEEINSQQRSSSGAQET 52
           MEKSMEGIL+F+KSVELK+N +F+ELG K+N I+E I SQQ SSSG Q+T
Sbjct: 72  MEKSMEGILDFLKSVELKMNSRFKELGQKMNGIVEAIRSQQPSSSGVQDT 121

[Close]
BLAST of MELO3C025579 vs. NCBI nr
Match: KAA0026144.1 (protein Ycf2-like [Cucumis melo var. makuwa] >TYK11604.1 protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 7.0e-08
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 2   MEKSMEGILEFIKSVELKINKKFEELGHKLNEIIEEINSQQRSSSGAQET 52
           +EKSMEGIL+F+KSVELK+  +FEELG K+N IIE I SQQ SSSGAQ+T
Sbjct: 101 LEKSMEGILDFLKSVELKMITRFEELGQKMNGIIEAIRSQQPSSSGAQDT 150

[Close]
BLAST of MELO3C025579 vs. ExPASy TrEMBL
Match: A0A5A7UFT9 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00360 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 0 

Query: 2   MEKSMEGILEFIKSVELKINKKFEELGHKLNEIIEEINSQQRSSSGAQET 52
           MEKSM+GIL+FIK VELK+NKKFE+LG KLN IIEEI SQQ SSSGAQET
Sbjct: 155 MEKSMKGILKFIKPVELKMNKKFEQLGQKLNGIIEEIKSQQPSSSGAQET 204

[Close]
BLAST of MELO3C025579 vs. ExPASy TrEMBL
Match: A0A5A7STF8 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00990 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.8e-09
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 2  MEKSMEGILEFIKSVELKINKKFEELGHKLNEIIEEINSQQRSSSGAQET 52
          ME SMEGILEF+KSVELK+N +FEELG K+N IIE I SQQ SSSGAQ T
Sbjct: 24 METSMEGILEFLKSVELKMNTRFEELGQKMNGIIEAIRSQQSSSSGAQYT 73

[Close]
BLAST of MELO3C025579 vs. ExPASy TrEMBL
Match: A0A5D3BQF5 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00820 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.8e-09
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 2   MEKSMEGILEFIKSVELKINKKFEELGHKLNEIIEEINSQQRSSSGAQET 52
           ME SMEGILEF+KSVELK+N +FEELG K+N IIE I SQQ SSSGAQ T
Sbjct: 173 METSMEGILEFLKSVELKMNTRFEELGQKMNGIIEAIKSQQSSSSGAQYT 222

[Close]
BLAST of MELO3C025579 vs. ExPASy TrEMBL
Match: A0A5D3DL57 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001510 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 2   MEKSMEGILEFIKSVELKINKKFEELGHKLNEIIEEINSQQRSSSGAQET 52
           MEKSMEGIL+F+KSVELK+N +F+ELG K+N I+E I SQQ SSSG Q+T
Sbjct: 72  MEKSMEGILDFLKSVELKMNSRFKELGQKMNGIVEAIRSQQPSSSGVQDT 121

[Close]
BLAST of MELO3C025579 vs. ExPASy TrEMBL
Match: A0A5D3CKB8 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00490 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-08
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 2   MEKSMEGILEFIKSVELKINKKFEELGHKLNEIIEEINSQQRSSSGAQET 52
           +EKSMEGIL+F+KSVELK+  +FEELG K+N IIE I SQQ SSSGAQ+T
Sbjct: 101 LEKSMEGILDFLKSVELKMITRFEELGQKMNGIIEAIRSQQPSSSGAQDT 150

The following BLAST results are available for this feature:
BLAST of MELO3C025579 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C025579 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054652.12.6e-1082.00protein Ycf2-like [Cucumis melo var. makuwa] >TYK08610.1 protein Ycf2-like [Cucu... [more]
KAA0033908.11.4e-0876.00protein Ycf2-like [Cucumis melo var. makuwa][more]
TYK01290.11.4e-0876.00protein Ycf2-like [Cucumis melo var. makuwa][more]
KAA0041493.12.4e-0870.00protein Ycf2-like [Cucumis melo var. makuwa] >TYK24367.1 protein Ycf2-like [Cucu... [more]
KAA0026144.17.0e-0872.00protein Ycf2-like [Cucumis melo var. makuwa] >TYK11604.1 protein Ycf2-like [Cucu... [more]
BLAST of MELO3C025579 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UFT91.2e-1082.00Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G0... [more]
A0A5A7STF86.8e-0976.00Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G... [more]
A0A5D3BQF56.8e-0976.00Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G008... [more]
A0A5D3DL571.2e-0870.00Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00... [more]
A0A5D3CKB83.4e-0872.00Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00... [more]
BLAST of MELO3C025579 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025579.1MELO3C025579.1mRNA