MELO3C025504.jh1 (gene) Melon (Harukei-3) v1.41
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDSstart_codon Hold the cursor over a type above to highlight its positions in the sequence below.CAACACTATGCAATCGCCGCCACCGCCGTGTACGGTGGTTCTCAGCCCCTGTGCTGCATGTAAGATCCTCCGCCGGAAATGCGTCGATAATTGTATTTTAGCACCTTATTTTCCTCCGACGGACCCTCTCAAGTTCGCCGCCGTCCATAGAATATATGGTGCGGGCAACGTCATCAAGTTCTTCCAGGTAAACACCTACGTCCAAAAACAATTTATAATCCAATTTTATTTATTCATTGTTTTTTTTTCTTTTCTTAATTTCATTCAAATTGCAACTTGAACTTACAGAAATGTTGCAATGCCATCAATATTTTTTTTTTTTTTTTTTGCTATATTAGAAAATAATATCCTTCTGATATCGTTAGTGTTAGAATCAACAATAAATAAATAAAGAAAAATATTGCAACACTACATAGTACAATTTGATGAAGAAAAAAATTTGGGGCATCTCGGAACAACCCATATTTTTAATGTTAATTCATAGTTTGTCAATCAATAAATTCTCTCTTTTTCTTAATTAATTTTTCTAAAATTGTTTTTCCTACTGTGATGCAATTAGAGAACATATGTAAGATGTCCTCAAGTATTACAATAATTAAAACACGATCATAATTGCTATATGCTCGATCAAAGGACATATATGAGAAAGAAAACATATACAAACTTGGAATAATCTACTGTGTTACGTATTTTTGTAAAGAGAATTTCGACTTTTTTTTTACCATGTTAAAAGAAATCGGGGATACATGGAAAATTTAAAAACAACATCATCATTGCTCTAGAATAAAAAAGATCTAATATATAGCATACTAATTATGTAAAAATGAAATACTACAAATAATTATATAGGAATTGCCAGAGCGAGTTGGAGAGCGGATGCTGCGAGCAGTTTGGTATA CAACACTATGCAATCGCCGCCACCGCCGTGTACGGTGGTTCTCAGCCCCTGTGCTGCATGTAAGATCCTCCGCCGGAAATGCGTCGATAATTGTATTTTAGCACCTTATTTTCCTCCGACGGACCCTCTCAAGTTCGCCGCCGTCCATAGAATATATGGTGCGGGCAACGTCATCAAGTTCTTCCAGGAATTGCCAGAGCGAGTTGGAGAGCGGATGCTGCGAGCAGTTTGGTATA ATGCAATCGCCGCCACCGCCGTGTACGGTGGTTCTCAGCCCCTGTGCTGCATGTAAGATCCTCCGCCGGAAATGCGTCGATAATTGTATTTTAGCACCTTATTTTCCTCCGACGGACCCTCTCAAGTTCGCCGCCGTCCATAGAATATATGGTGCGGGCAACGTCATCAAGTTCTTCCAGGAATTGCCAGAGCGAGTTGGAGAGCGGATGCTGCGAGCAGTTTGGTAT MQSPPPPCTVVLSPCAACKILRRKCVDNCILAPYFPPTDPLKFAAVHRIYGAGNVIKFFQELPERVGERMLRAVWY Homology
BLAST of MELO3C025504.jh1 vs. NCBI nr
Match: TYK05721.1 (LOB domain-containing protein 1-like [Cucumis melo var. makuwa]) HSP 1 Score: 132 bits (331), Expect = 1.73e-38 Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. NCBI nr
Match: KAE8648523.1 (hypothetical protein Csa_008698 [Cucumis sativus]) HSP 1 Score: 126 bits (316), Expect = 8.07e-34 Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. NCBI nr
Match: KAG7016272.1 (LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 120 bits (300), Expect = 2.70e-32 Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. NCBI nr
Match: KAG6578743.1 (LOB domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 120 bits (300), Expect = 2.70e-32 Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. NCBI nr
Match: XP_022939142.1 (LOB domain-containing protein 1-like [Cucurbita moschata]) HSP 1 Score: 119 bits (299), Expect = 3.93e-32 Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2) HSP 1 Score: 105.1 bits (261), Expect = 3.5e-22 Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 1.3e-21 Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. ExPASy Swiss-Prot
Match: O64836 (LOB domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=LBD10 PE=2 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 3.7e-16 Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. ExPASy Swiss-Prot
Match: P59467 (LOB domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=LBD23 PE=1 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 4.8e-16 Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. ExPASy Swiss-Prot
Match: P59468 (LOB domain-containing protein 24 OS=Arabidopsis thaliana OX=3702 GN=LBD24 PE=2 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 4.8e-16 Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C1A9 (LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002050 PE=3 SV=1) HSP 1 Score: 132 bits (331), Expect = 8.38e-39 Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KU20 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G496470 PE=3 SV=1) HSP 1 Score: 126 bits (316), Expect = 3.02e-35 Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. ExPASy TrEMBL
Match: A0A6J1FFZ7 (LOB domain-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111445138 PE=3 SV=1) HSP 1 Score: 119 bits (299), Expect = 1.90e-32 Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. ExPASy TrEMBL
Match: A0A6A5N2Y1 (Putative transcription factor AS2-LOB family OS=Lupinus albus OX=3870 GN=Lal_00047299 PE=3 SV=1) HSP 1 Score: 114 bits (284), Expect = 1.10e-29 Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KNK9 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175870 PE=3 SV=1) HSP 1 Score: 109 bits (273), Expect = 1.39e-28 Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 ) HSP 1 Score: 105.1 bits (261), Expect = 2.5e-23 Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 ) HSP 1 Score: 103.2 bits (256), Expect = 9.3e-23 Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. TAIR 10
Match: AT2G23660.1 (LOB domain-containing protein 10 ) HSP 1 Score: 85.1 bits (209), Expect = 2.6e-17 Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. TAIR 10
Match: AT2G23660.2 (LOB domain-containing protein 10 ) HSP 1 Score: 85.1 bits (209), Expect = 2.6e-17 Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 0
BLAST of MELO3C025504.jh1 vs. TAIR 10
Match: AT3G26620.1 (LOB domain-containing protein 23 ) HSP 1 Score: 84.7 bits (208), Expect = 3.4e-17 Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|