MELO3C025478.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C025478.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionDUF4283 domain-containing protein
Locationchr09: 6275739 .. 6276345 (-)
RNA-Seq ExpressionMELO3C025478.jh1
SyntenyMELO3C025478.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGACAAAAGGAACAAATACATTTACTCCAGCTCTGATTCTAATTCTGATAACAAGAGAAGATCATACGCGGAAGTTGTTATCAAAGGAAGCTCTTCTGATGATGATATTATCAACTTGTCCATAAATGCAAATACGGGGAAAAAAAAAGGTAGGGAAAGGATTTGCTGAAATTGTCCTTGATTGGAACAAGATCGTCGTCTTAACGAGAAGATACTTTCATGATGATTGGGAGAAAATTGTTGAGAAGCTAAAAGATCAACTTGACCATCCTATAAGCTATAAACCTTTTCATGCTGATAAAGCACTGATTTTCTTCAAAGATAAAGAGCAAGCAAATCTGATCTGCAAAAACAAGGGATAGACTACGGTGGGGTGGTTCTATGTGAAATTTGAAGAATGGAACCAAAAAGCACATGCATCGCCGAAAGTTGTGCCAAGCTATGGAGGTTGGATAAAAGTTCGTGGAATCCCATTGCACGCTTGGAACTTAGAAAGTTTCATTCAAATTGGTGATGCCTGTGGAGGATACATTGATGTGGTTCGTGAAACCAGAGAGCTCACAAACCTCATTGAAGCTTTTATCAGAATAAAAGACAACTAG

mRNA sequence

ATGGTTGACAAAAGGAACAAATACATTTACTCCAGCTCTGATTCTAATTCTGATAACAAGAGAAGATCATACGCGGAAGTTGTTATCAAAGGAAGCTCTTCTGATGATGATATTATCAACTTGTCCATAAATGCAAATACGGGGAAAAAAAAAGGTAGGGAAAGGATTTGCTGAAATTGTCCTTGATTGGAACAAGATCGTCGTCTTAACGAGAAGATACTTTCATGATGATTGGGAGAAAATTGTTGAGAAGCTAAAAGATCAACTTGACCATCCTATAAGCTATAAACCTTTTCATGCTGATAAAGCACTGATTTTCTTCAAAGATAAAGAGCAAGCAAATCTGATCTGCAAAAACAAGGGATAGACTACGGTGGGGTGGTTCTATGTGAAATTTGAAGAATGGAACCAAAAAGCACATGCATCGCCGAAAGTTGTGCCAAGCTATGGAGGTTGGATAAAAGTTCGTGGAATCCCATTGCACGCTTGGAACTTAGAAAGTTTCATTCAAATTGGTGATGCCTGTGGAGGATACATTGATGTGGTTCGTGAAACCAGAGAGCTCACAAACCTCATTGAAGCTTTTATCAGAATAAAAGACAACTAG

Coding sequence (CDS)

ATGCAAATACGGGGAAAAAAAAAGGTAGGGAAAGGATTTGCTGAAATTGTCCTTGATTGGAACAAGATCGTCGTCTTAACGAGAAGATACTTTCATGATGATTGGGAGAAAATTGTTGAGAAGCTAAAAGATCAACTTGACCATCCTATAAGCTATAAACCTTTTCATGCTGATAAAGCACTGATTTTCTTCAAAGATAAAGAGCAAGCAAATCTGATCTGCAAAAACAAGGGATAG

Protein sequence

MQIRGKKKVGKGFAEIVLDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIFFKDKEQANLICKNKG
Homology
BLAST of MELO3C025478.jh1 vs. NCBI nr
Match: TYK05762.1 (cleavage and polyadenylation specificity factor subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (385), Expect = 4.56e-45
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 8   KVGKGFAEIVLDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIFFKDK 67
           +VGKGFAEIVLDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIFFKDK
Sbjct: 35  EVGKGFAEIVLDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIFFKDK 94

Query: 68  EQANLICKNKG 78
           EQANLICKNKG
Sbjct: 95  EQANLICKNKG 105

BLAST of MELO3C025478.jh1 vs. NCBI nr
Match: KAA0051807.1 (hypothetical protein E6C27_scaffold60G002200 [Cucumis melo var. makuwa] >TYK21434.1 hypothetical protein E5676_scaffold609G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (307), Expect = 5.57e-31
Identity = 55/72 (76.39%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 7   KKVGKGFAEIVLDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIFFKD 66
           KK GK      ++W K VVLTRRYFHDDWE IVEKLK+QLD  +SYKPFHADKALIFFKD
Sbjct: 120 KKTGKDLTSFTIEWEKTVVLTRRYFHDDWENIVEKLKEQLDTTVSYKPFHADKALIFFKD 179

Query: 67  KEQANLICKNKG 78
            EQANLICKNKG
Sbjct: 180 IEQANLICKNKG 191

BLAST of MELO3C025478.jh1 vs. NCBI nr
Match: TYK18307.1 (hypothetical protein E5676_scaffold456G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (281), Expect = 5.31e-29
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 0

Query: 4   RGKKKVGKGFAEIVLDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIF 63
           R KKK G+   E   DWNK +VL  RYFHDD ++I+EKLK+QLD PI+YKPFHA KALIF
Sbjct: 138 REKKKKGEQTDETAFDWNKTIVLITRYFHDDLKRIIEKLKEQLDQPINYKPFHAYKALIF 197

Query: 64  FKDKEQANLICKNKG 78
           F+DKEQA LICKN+G
Sbjct: 198 FEDKEQAKLICKNRG 212

BLAST of MELO3C025478.jh1 vs. NCBI nr
Match: KAA0047970.1 (hypothetical protein E6C27_scaffold385G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 1.50e-28
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 0

Query: 4   RGKKKVGKGFAEIVLDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIF 63
           R KKK G+   E   DWNK +VL  RYFHDD ++I+EKLK+QLD PI+YKPFHA KALIF
Sbjct: 138 REKKKKGEQTDETAFDWNKTIVLITRYFHDDLKRIIEKLKEQLDLPINYKPFHAYKALIF 197

Query: 64  FKDKEQANLICKNKG 78
           F+DKEQA LICKN+G
Sbjct: 198 FEDKEQAKLICKNRG 212

BLAST of MELO3C025478.jh1 vs. NCBI nr
Match: KAA0050054.1 (hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 7.87e-27
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 7   KKVGKGFAEIVLDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIFFKD 66
           KK GK       +W + VVLTRR+FHDDWEKIVEKL +QLD  + YKPFHADKALI FK+
Sbjct: 224 KKTGKSNTNFSFEWERTVVLTRRFFHDDWEKIVEKLNEQLDTTVRYKPFHADKALICFKN 283

Query: 67  KEQANLICKNKG 78
           +EQANLICKNKG
Sbjct: 284 EEQANLICKNKG 295

BLAST of MELO3C025478.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C3G6 (Cleavage and polyadenylation specificity factor subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002510 PE=4 SV=1)

HSP 1 Score: 152 bits (385), Expect = 2.21e-45
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 8   KVGKGFAEIVLDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIFFKDK 67
           +VGKGFAEIVLDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIFFKDK
Sbjct: 35  EVGKGFAEIVLDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIFFKDK 94

Query: 68  EQANLICKNKG 78
           EQANLICKNKG
Sbjct: 95  EQANLICKNKG 105

BLAST of MELO3C025478.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DCX6 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00990 PE=4 SV=1)

HSP 1 Score: 122 bits (307), Expect = 2.70e-31
Identity = 55/72 (76.39%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 7   KKVGKGFAEIVLDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIFFKD 66
           KK GK      ++W K VVLTRRYFHDDWE IVEKLK+QLD  +SYKPFHADKALIFFKD
Sbjct: 120 KKTGKDLTSFTIEWEKTVVLTRRYFHDDWENIVEKLKEQLDTTVSYKPFHADKALIFFKD 179

Query: 67  KEQANLICKNKG 78
            EQANLICKNKG
Sbjct: 180 IEQANLICKNKG 191

BLAST of MELO3C025478.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D436 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00160 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 2.57e-29
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 0

Query: 4   RGKKKVGKGFAEIVLDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIF 63
           R KKK G+   E   DWNK +VL  RYFHDD ++I+EKLK+QLD PI+YKPFHA KALIF
Sbjct: 138 REKKKKGEQTDETAFDWNKTIVLITRYFHDDLKRIIEKLKEQLDQPINYKPFHAYKALIF 197

Query: 64  FKDKEQANLICKNKG 78
           F+DKEQA LICKN+G
Sbjct: 198 FEDKEQAKLICKNRG 212

BLAST of MELO3C025478.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TXP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00300 PE=4 SV=1)

HSP 1 Score: 111 bits (278), Expect = 7.28e-29
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 0

Query: 4   RGKKKVGKGFAEIVLDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIF 63
           R KKK G+   E   DWNK +VL  RYFHDD ++I+EKLK+QLD PI+YKPFHA KALIF
Sbjct: 138 REKKKKGEQTDETAFDWNKTIVLITRYFHDDLKRIIEKLKEQLDLPINYKPFHAYKALIF 197

Query: 64  FKDKEQANLICKNKG 78
           F+DKEQA LICKN+G
Sbjct: 198 FEDKEQAKLICKNRG 212

BLAST of MELO3C025478.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U495 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00340 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 3.81e-27
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 7   KKVGKGFAEIVLDWNKIVVLTRRYFHDDWEKIVEKLKDQLDHPISYKPFHADKALIFFKD 66
           KK GK       +W + VVLTRR+FHDDWEKIVEKL +QLD  + YKPFHADKALI FK+
Sbjct: 224 KKTGKSNTNFSFEWERTVVLTRRFFHDDWEKIVEKLNEQLDTTVRYKPFHADKALICFKN 283

Query: 67  KEQANLICKNKG 78
           +EQANLICKNKG
Sbjct: 284 EEQANLICKNKG 295

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK05762.14.56e-4598.59cleavage and polyadenylation specificity factor subunit 1 [Cucumis melo var. mak... [more]
KAA0051807.15.57e-3176.39hypothetical protein E6C27_scaffold60G002200 [Cucumis melo var. makuwa] >TYK2143... [more]
TYK18307.15.31e-2968.00hypothetical protein E5676_scaffold456G00160 [Cucumis melo var. makuwa][more]
KAA0047970.11.50e-2868.00hypothetical protein E6C27_scaffold385G00300 [Cucumis melo var. makuwa][more]
KAA0050054.17.87e-2769.44hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C3G62.21e-4598.59Cleavage and polyadenylation specificity factor subunit 1 OS=Cucumis melo var. m... [more]
A0A5D3DCX62.70e-3176.39DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3D4362.57e-2968.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TXP67.28e-2968.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U4953.81e-2769.44DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025478.jh1.t1MELO3C025478.jh1.t1mRNA