MELO3C025455 (gene) Melon (DHL92) v4

Overview
NameMELO3C025455
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr09: 5588481 .. 5588946 (-)
RNA-Seq ExpressionMELO3C025455
SyntenyMELO3C025455
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGGGCCATCATGCAGTGGGTTCGGATGGAACGATGAGGCAAAGTGCATCATTGCCGAGAAGGAACTGTTTGACAACGGGTAAGAGTAAGGAAACTAATAAAAACGTGACAATATTTGCGCATACTTTGATTGACGATTTTTCGTAATGGTAGTTTGAAGTGCTCGTGTTTTTTATGCAGTTGCATCCTGCACTGAAGGGCCTTCTTAACAAACCCTTTCCCTATTATGATGAACTTGCATATGTGTTTAGGAGGTATAGGGCGATGGGTCACTTTGCAGAGACGTTCACTTACGTCTGGTCTAATGAGTTTATCGAGTACGATGGGTGGAAACAATATGGAGCTTCTATCCATGTACAGCAGGGGATTAACATGTCCAAGGATGATGTGCGTGTCTCACGACTTGCTCGAGTGGATCCAAGCGAAAGAGTTGAAGCCAGCATGAGGGTGAGATTGAGATGA

mRNA sequence

ATGCCTGGGCCATCATGCAGTGGGTTCGGATGGAACGATGAGGCAAAGTGCATCATTGCCGAGAAGGAACTGTTTGACAACGGGAGGTATAGGGCGATGGGTCACTTTGCAGAGACGTTCACTTACGTCTGGTCTAATGAGTTTATCGAGTACGATGGGTGGAAACAATATGGAGCTTCTATCCATGTACAGCAGGGGATTAACATGTCCAAGGATGATGTGCGTGTCTCACGACTTGCTCGAGTGGATCCAAGCGAAAGAGTTGAAGCCAGCATGAGGGTGAGATTGAGATGA

Coding sequence (CDS)

ATGCCTGGGCCATCATGCAGTGGGTTCGGATGGAACGATGAGGCAAAGTGCATCATTGCCGAGAAGGAACTGTTTGACAACGGGAGGTATAGGGCGATGGGTCACTTTGCAGAGACGTTCACTTACGTCTGGTCTAATGAGTTTATCGAGTACGATGGGTGGAAACAATATGGAGCTTCTATCCATGTACAGCAGGGGATTAACATGTCCAAGGATGATGTGCGTGTCTCACGACTTGCTCGAGTGGATCCAAGCGAAAGAGTTGAAGCCAGCATGAGGGTGAGATTGAGATGA

Protein sequence

MPGPSCSGFGWNDEAKCIIAEKELFDNGRYRAMGHFAETFTYVWSNEFIEYDGWKQYGASIHVQQGINMSKDDVRVSRLARVDPSERVEASMRVRLR
Homology
[Close]
BLAST of MELO3C025455 vs. NCBI nr
Match: KAA0053154.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 51/108 (47.22%), Postives = 56/108 (51.85%), Query Frame = 0 

Query: 1   MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMG 60
           M GP+CSGFGWNDE KCIIAEKELFDN                          GRYRAMG
Sbjct: 84  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKSFLYYDELTYVFGRYRAMG 143

Query: 61  HFAETFTYVWSNEFIEYDGWKQYGASIH----VQQGINMSKDDVRVSR 79
            F ETF  V SNE   YD +     +        Q IN+S+DDVR SR
Sbjct: 144 WFTETFIDVGSNESGGYDRFDIGDGNEEFPPVYSQRINLSQDDVRASR 191

[Close]
BLAST of MELO3C025455 vs. NCBI nr
Match: TYK24223.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 4.0e-12
Identity = 51/111 (45.95%), Postives = 57/111 (51.35%), Query Frame = 0 

Query: 1   MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMG 60
           M GP+CSGFGWNDE KCIIAEKELFDN                          GRYRA G
Sbjct: 84  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKSFLYYDELTYVFGRYRATG 143

Query: 61  HFAETFTYVWSNEFIEYDGWKQYGASIH----VQQGINMSKDDVRVSRLAR 82
            F ETF  V SNE   YD +     +        Q IN+S+DDVR SR +R
Sbjct: 144 WFTETFIDVGSNESGGYDRFDIGDGNEEFPPVYSQRINLSQDDVRASRPSR 194

[Close]
BLAST of MELO3C025455 vs. NCBI nr
Match: KAA0067987.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-11
Identity = 57/129 (44.19%), Postives = 66/129 (51.16%), Query Frame = 0 

Query: 1   MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMG 60
           M GP+CSGFGWNDE KCIIAEK+LFDN                          GR RA G
Sbjct: 57  MRGPACSGFGWNDEEKCIIAEKKLFDNWVRSHPAAKGLMNKPFPYYDELTYVFGRDRATG 116

Query: 61  HFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGINMSKDDVRVSRLARVDPSE- 96
            FAETF  V SNE       F   DG K +  S++  QGI++S+DDVR SR +R      
Sbjct: 117 RFAETFADVGSNEPGGGYDKFDMGDGNKDF-PSVY-SQGIDLSQDDVRASRPSRASEGRT 176

[Close]
BLAST of MELO3C025455 vs. NCBI nr
Match: KAA0037345.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ97562.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-11
Identity = 50/103 (48.54%), Postives = 62/103 (60.19%), Query Frame = 0 

Query: 1   MPGPSCSGFGWNDEAKCIIAEKELFDNGRYRAMGHFAETFTYVWSNE-------FIEYDG 60
           M GP+CSGFGWNDE KCI+AEK+LFDN   R  G FAETF  V SNE       F   DG
Sbjct: 34  MRGPACSGFGWNDEEKCIVAEKKLFDNW-VRGTGRFAETFADVGSNESCGGYDRFDMGDG 93

Query: 61  WKQYGASIHVQQGINMSKDDVRVSRLAR-VDPSERVEASMRVR 96
            + +       QG+++S+DDVR SR +R ++   R   S R R
Sbjct: 94  NEDFPPV--YSQGVDISQDDVRASRPSRALEGRTRSSGSKRKR 133

[Close]
BLAST of MELO3C025455 vs. NCBI nr
Match: KAA0047011.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-11
Identity = 51/114 (44.74%), Postives = 59/114 (51.75%), Query Frame = 0 

Query: 1   MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMG 60
           M GP+CSGFGWNDE KCI+AEKELFDN                          GR RA G
Sbjct: 55  MRGPTCSGFGWNDEEKCIVAEKELFDNWVRSHPTAKGLLNQPFPYYDELTYVFGRDRATG 114

Query: 61  HFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGINMSKDDVRVSRLAR 82
            FAETF  V SNE       F   DG K +       QG+++S+DDVR SR +R
Sbjct: 115 RFAETFADVGSNESGGGYDRFDMGDGNKDFPPV--YSQGVDISQDDVRASRPSR 166

[Close]
BLAST of MELO3C025455 vs. ExPASy TrEMBL
Match: A0A5A7UD16 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1248G00080 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.6e-13
Identity = 51/108 (47.22%), Postives = 56/108 (51.85%), Query Frame = 0 

Query: 1   MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMG 60
           M GP+CSGFGWNDE KCIIAEKELFDN                          GRYRAMG
Sbjct: 84  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKSFLYYDELTYVFGRYRAMG 143

Query: 61  HFAETFTYVWSNEFIEYDGWKQYGASIH----VQQGINMSKDDVRVSR 79
            F ETF  V SNE   YD +     +        Q IN+S+DDVR SR
Sbjct: 144 WFTETFIDVGSNESGGYDRFDIGDGNEEFPPVYSQRINLSQDDVRASR 191

[Close]
BLAST of MELO3C025455 vs. ExPASy TrEMBL
Match: A0A5D3DKR3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00290 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 51/111 (45.95%), Postives = 57/111 (51.35%), Query Frame = 0 

Query: 1   MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMG 60
           M GP+CSGFGWNDE KCIIAEKELFDN                          GRYRA G
Sbjct: 84  MRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKSFLYYDELTYVFGRYRATG 143

Query: 61  HFAETFTYVWSNEFIEYDGWKQYGASIH----VQQGINMSKDDVRVSRLAR 82
            F ETF  V SNE   YD +     +        Q IN+S+DDVR SR +R
Sbjct: 144 WFTETFIDVGSNESGGYDRFDIGDGNEEFPPVYSQRINLSQDDVRASRPSR 194

[Close]
BLAST of MELO3C025455 vs. ExPASy TrEMBL
Match: A0A5A7T7A5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00860 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.6e-12
Identity = 50/103 (48.54%), Postives = 62/103 (60.19%), Query Frame = 0 

Query: 1   MPGPSCSGFGWNDEAKCIIAEKELFDNGRYRAMGHFAETFTYVWSNE-------FIEYDG 60
           M GP+CSGFGWNDE KCI+AEK+LFDN   R  G FAETF  V SNE       F   DG
Sbjct: 34  MRGPACSGFGWNDEEKCIVAEKKLFDNW-VRGTGRFAETFADVGSNESCGGYDRFDMGDG 93

Query: 61  WKQYGASIHVQQGINMSKDDVRVSRLAR-VDPSERVEASMRVR 96
            + +       QG+++S+DDVR SR +R ++   R   S R R
Sbjct: 94  NEDFPPV--YSQGVDISQDDVRASRPSRALEGRTRSSGSKRKR 133

[Close]
BLAST of MELO3C025455 vs. ExPASy TrEMBL
Match: A0A5A7VL88 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001760 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.6e-12
Identity = 57/129 (44.19%), Postives = 66/129 (51.16%), Query Frame = 0 

Query: 1   MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMG 60
           M GP+CSGFGWNDE KCIIAEK+LFDN                          GR RA G
Sbjct: 57  MRGPACSGFGWNDEEKCIIAEKKLFDNWVRSHPAAKGLMNKPFPYYDELTYVFGRDRATG 116

Query: 61  HFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGINMSKDDVRVSRLARVDPSE- 96
            FAETF  V SNE       F   DG K +  S++  QGI++S+DDVR SR +R      
Sbjct: 117 RFAETFADVGSNEPGGGYDKFDMGDGNKDF-PSVY-SQGIDLSQDDVRASRPSRASEGRT 176

[Close]
BLAST of MELO3C025455 vs. ExPASy TrEMBL
Match: A0A5A7U086 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G002100 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.6e-12
Identity = 51/114 (44.74%), Postives = 59/114 (51.75%), Query Frame = 0 

Query: 1   MPGPSCSGFGWNDEAKCIIAEKELFDN--------------------------GRYRAMG 60
           M GP+CSGFGWNDE KCI+AEKELFDN                          GR RA G
Sbjct: 55  MRGPTCSGFGWNDEEKCIVAEKELFDNWVRSHPTAKGLLNQPFPYYDELTYVFGRDRATG 114

Query: 61  HFAETFTYVWSNE-------FIEYDGWKQYGASIHVQQGINMSKDDVRVSRLAR 82
            FAETF  V SNE       F   DG K +       QG+++S+DDVR SR +R
Sbjct: 115 RFAETFADVGSNESGGGYDRFDMGDGNKDFPPV--YSQGVDISQDDVRASRPSR 166

The following BLAST results are available for this feature:
BLAST of MELO3C025455 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0053154.11.4e-1247.22retrotransposon protein [Cucumis melo var. makuwa][more]
TYK24223.14.0e-1245.95retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0067987.11.2e-1144.19retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0037345.11.2e-1148.54retrotransposon protein [Cucumis melo var. makuwa] >TYJ97562.1 retrotransposon p... [more]
KAA0047011.11.2e-1144.74retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C025455 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C025455 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UD166.6e-1347.22Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DKR31.9e-1245.95Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T7A55.6e-1248.54Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VL885.6e-1244.19Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U0865.6e-1244.74Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C025455 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025455.1MELO3C025455.1mRNA