MELO3C025225 (gene) Melon (DHL92) v4

Overview


Name	MELO3C025225
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	high mobility group B protein 6
Location	chr08: 26564490 .. 26565768 (+)
RNA-Seq Expression	MELO3C025225
Synteny	MELO3C025225

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCTACATACATTCAAATTCAAACCCTAAAAACACAAAATTCCAAATCCTTCACGAAAAGAAAAACTTTCTTTTCCCTTCTTCTCTTTTTCTATGATTCCATTTCTTCACTTTCAAACCAATTTCTCCATCTCCACTCCACACCAATATGCAAACTCTCCACCATCCCTTACCCTCTCCTCGAGATATTCCTCTCAAGTCCGGCCGCCGCCCGCTCCAGCCAAAGAATTCTCTCCCAAATCTTGTCCCTTCCGTTGCCAAAATCATCAAATCCAAGCCGGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAGAATCATCCGCCGGCAACAACGGTGAGTATTGAGTCATGTGATTTGTCTCTGGCGGATGAACTGAATGCGGTTAAGAGGAAGATGGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATTTGGTTTTGGAGTTACGGATGAAGGAACTGTTACAGAGAAGTCAGGAACAGAGAGATCTGGAAATGGAAGTTGATAGGTTATTTAGACTGAAGGAACTTAGATCGTACTGTATGGTAAATTTGCTAAACGTTTTTTTTTCTTTTGGTTAGTTTGAAGGTTCGATTCGTGTTTTATTTGCTGATATTTTCTTATGATTTAAATCAGAGGATTTCTCCGATTCGAAGTCTCAGAGAGAAAGAACGAGAAAAGATTTTCACCGATGCACAATTTCCGGTACGTTCCGATCTAGAATCTTTAAAGCTTATTTCTTGGTTCATCTTGTGAAATCAATCCACAATTCACTGATTTGTTTCAGGAATTTGAAATCGGCGATGGAGAAGAATCTGTTGGCGAAAACTCCTCGTTGGATTCTTCAGAATTCGTAACAGGTTTTTGAAATCGTTTCTAAACTTTTGTGGATTTGCCCTAATTTTCCGATCATTACTACATCTTGTTCGGGTTTTCAAAAGTAGAAATTAGAGAAGGAAATGGATGTAATACCTCATTATGATCTTCTTTACGCATAGATGGAAGCTTTTGAGTAGTTGTAATCAATGTGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTTCAATTAATGTTTGAAAATGAAGAAATTCCAAATCGTGTTGGTGAATTTTTCTCTCGCCCCTCCGTAATCATCATGATCTGTAATGAATTTTGTGAGTGAGTTTAGGGAGATGGATTGATTCAATTCATGATCGTCAGTTACACACAAACAATCGAAGAATAAGAGTTTAAATATTTTGGTGG

mRNA sequence

CGCCTACATACATTCAAATTCAAACCCTAAAAACACAAAATTCCAAATCCTTCACGAAAAGAAAAACTTTCTTTTCCCTTCTTCTCTTTTTCTATGATTCCATTTCTTCACTTTCAAACCAATTTCTCCATCTCCACTCCACACCAATATGCAAACTCTCCACCATCCCTTACCCTCTCCTCGAGATATTCCTCTCAAGTCCGGCCGCCGCCCGCTCCAGCCAAAGAATTCTCTCCCAAATCTTGTCCCTTCCGTTGCCAAAATCATCAAATCCAAGCCGGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAGAATCATCCGCCGGCAACAACGGTGAGTATTGAGTCATGTGATTTGTCTCTGGCGGATGAACTGAATGCGGTTAAGAGGAAGATGGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATTTGGTTTTGGAGTTACGGATGAAGGAACTGTTACAGAGAAGTCAGGAACAGAGAGATCTGGAAATGGAAGTTGATAGGTTATTTAGACTGAAGGAACTTAGATCGTACTGTATGGTTCGATTCGTGTTTTATTTGCTGATATTTTCTTATGATTTAAATCAGAGGATTTCTCCGATTCGAAGTCTCAGAGAGAAAGAACGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGAAATCGGCGATGGAGAAGAATCTGTTGGCGAAAACTCCTCGTTGGATTCTTCAGAATTCGTAACAGGTTTTTGAAATCGTTTCTAAACTTTTGTGGATTTGCCCTAATTTTCCGATCATTACTACATCTTGTTCGGGTTTTCAAAAGTAGAAATTAGAGAAGGAAATGGATGTAATACCTCATTATGATCTTCTTTACGCATAGATGGAAGCTTTTGAGTAGTTGTAATCAATGTGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTTCAATTAATGTTTGAAAATGAAGAAATTCCAAATCGTGTTGGTGAATTTTTCTCTCGCCCCTCCGTAATCATCATGATCTGTAATGAATTTTGTGAGTGAGTTTAGGGAGATGGATTGATTCAATTCATGATCGTCAGTTACACACAAACAATCGAAGAATAAGAGTTTAAATATTTTGGTGG

Coding sequence (CDS)

ATGCAAACTCTCCACCATCCCTTACCCTCTCCTCGAGATATTCCTCTCAAGTCCGGCCGCCGCCCGCTCCAGCCAAAGAATTCTCTCCCAAATCTTGTCCCTTCCGTTGCCAAAATCATCAAATCCAAGCCGGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAGAATCATCCGCCGGCAACAACGGTGAGTATTGAGTCATGTGATTTGTCTCTGGCGGATGAACTGAATGCGGTTAAGAGGAAGATGGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATTTGGTTTTGGAGTTACGGATGAAGGAACTGTTACAGAGAAGTCAGGAACAGAGAGATCTGGAAATGGAAGTTGATAGGTTATTTAGACTGAAGGAACTTAGATCGTACTGTATGGTTCGATTCGTGTTTTATTTGCTGATATTTTCTTATGATTTAAATCAGAGGATTTCTCCGATTCGAAGTCTCAGAGAGAAAGAACGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGAAATCGGCGATGGAGAAGAATCTGTTGGCGAAAACTCCTCGTTGGATTCTTCAGAATTCGTAACAGGTTTTTGA

Protein sequence

MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMVRFVFYLLIFSYDLNQRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF

Homology

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BLAST of MELO3C025225 vs. NCBI nr
Match: XP_008463266.1 (PREDICTED: high mobility group B protein 6 [Cucumis melo] >TYK09760.1 high mobility group B protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 349.7 bits (896), Expect = 1.7e-92
Identity = 191/207 (92.27%), Postives = 191/207 (92.27%), Query Frame = 0


Query: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
           PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMVRFVFYLLIFSYDLNQRISPIRSLREKEREKIFTDAQF 180
           QRDLEMEVDRLFRLKELRSYCM                RISPIRSLREKEREKIFTDAQF
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM----------------RISPIRSLREKEREKIFTDAQF 180

Query: 181 PEFEIGDGEESVGENSSLDSSEFVTGF 208
           PEFEIGDGEESVGENSSLDSSEFVTGF
Sbjct: 181 PEFEIGDGEESVGENSSLDSSEFVTGF 191

[Close]

BLAST of MELO3C025225 vs. NCBI nr
Match: KAA0025412.1 (high mobility group B protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 347.1 bits (889), Expect = 1.1e-91
Identity = 190/207 (91.79%), Postives = 190/207 (91.79%), Query Frame = 0


Query: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
           PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMVRFVFYLLIFSYDLNQRISPIRSLREKEREKIFTDAQF 180
           QRDLEMEVDRLFRLKELRSYCM                RISPIRSLREKEREKIFTDAQF
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM----------------RISPIRSLREKEREKIFTDAQF 180

Query: 181 PEFEIGDGEESVGENSSLDSSEFVTGF 208
           PEFEIGDGEESVGENSSLDSSEFVTGF
Sbjct: 181 PEFEIGDGEESVGENSSLDSSEFVTGF 191

[Close]

BLAST of MELO3C025225 vs. NCBI nr
Match: XP_004142680.1 (high mobility group B protein 6 [Cucumis sativus] >KGN54454.1 hypothetical protein Csa_012022 [Cucumis sativus])

HSP 1 Score: 342.4 bits (877), Expect = 2.7e-90
Identity = 187/207 (90.34%), Postives = 188/207 (90.82%), Query Frame = 0


Query: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
           PP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61  PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMVRFVFYLLIFSYDLNQRISPIRSLREKEREKIFTDAQF 180
           QRDLEMEVDRLFRLKELRSYCM                RISPIRSLREKEREKIFTDAQF
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM----------------RISPIRSLREKEREKIFTDAQF 180

Query: 181 PEFEIGDGEESVGENSSLDSSEFVTGF 208
           PEFEIGDGEESVGENSSLDSSEFVTGF
Sbjct: 181 PEFEIGDGEESVGENSSLDSSEFVTGF 191

[Close]

BLAST of MELO3C025225 vs. NCBI nr
Match: XP_038883293.1 (uncharacterized protein LOC120074285 [Benincasa hispida])

HSP 1 Score: 315.5 bits (807), Expect = 3.5e-82
Identity = 176/213 (82.63%), Postives = 182/213 (85.45%), Query Frame = 0


Query: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPL +P+D+PLKSGRRPLQPKNSLPN  PSVAK IKSKPE IQISLSGDANKENH
Sbjct: 1   MQTLHHPLATPQDLPLKSGRRPLQPKNSLPNSGPSVAKFIKSKPERIQISLSGDANKENH 60

Query: 61  PP------ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKEL 120
           PP       TT SIESCD SLADELNAVKRK+ERLRLDGERTE+MLRERDLVLELRMKEL
Sbjct: 61  PPIHATATTTTASIESCDSSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120

Query: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCMVRFVFYLLIFSYDLNQRISPIRSLREKEREKI 180
           LQRSQEQRDLEMEVDRLFRLKELRSYCM                RISPIRSLREKEREKI
Sbjct: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCM----------------RISPIRSLREKEREKI 180

Query: 181 FTDAQFPEFEIGDGEESVGENSSLDSSEFVTGF 208
           FTDAQFPEFEIGDGEESVGENSSLDS+ FVTGF
Sbjct: 181 FTDAQFPEFEIGDGEESVGENSSLDSAGFVTGF 197

[Close]

BLAST of MELO3C025225 vs. NCBI nr
Match: KAG7033714.1 (hypothetical protein SDJN02_03439, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.9 bits (764), Expect = 3.4e-77
Identity = 166/211 (78.67%), Postives = 182/211 (86.26%), Query Frame = 0


Query: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQ LH PL +P D+PLKSGRRPLQPKNSLPN VP+VAK++KSKPE IQISL  DANKENH
Sbjct: 1   MQALHQPLATPHDLPLKSGRRPLQPKNSLPNPVPAVAKVVKSKPERIQISLPADANKENH 60

Query: 61  PP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRS 120
           PP  A   S+ESCDLSLADELNAVKRK+ERLRL+ ERTE+ML+ERD++LELRMKELLQRS
Sbjct: 61  PPIHAKAASVESCDLSLADELNAVKRKLERLRLERERTEQMLKERDMILELRMKELLQRS 120

Query: 121 QEQRDLEMEVDRLFRLKELRSYCMVRFVFYLLIFS--YDLNQRISPIRSLREKEREKIFT 180
           +EQRDLEMEVDRLFRLKELR         +LLI     DL+QRISPIRSLREKEREKIF 
Sbjct: 121 KEQRDLEMEVDRLFRLKELR---------FLLILDDLDDLDQRISPIRSLREKEREKIFA 180

Query: 181 DAQFPEFEIGDGEESVGENSSLDSSEFVTGF 208
           DAQFPE+EIGDGEESVGENSSLDSSEFVTGF
Sbjct: 181 DAQFPEYEIGDGEESVGENSSLDSSEFVTGF 202

[Close]

BLAST of MELO3C025225 vs. ExPASy TrEMBL
Match: A0A5D3CEI7 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00430 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 8.1e-93
Identity = 191/207 (92.27%), Postives = 191/207 (92.27%), Query Frame = 0


Query: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
           PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMVRFVFYLLIFSYDLNQRISPIRSLREKEREKIFTDAQF 180
           QRDLEMEVDRLFRLKELRSYCM                RISPIRSLREKEREKIFTDAQF
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM----------------RISPIRSLREKEREKIFTDAQF 180

Query: 181 PEFEIGDGEESVGENSSLDSSEFVTGF 208
           PEFEIGDGEESVGENSSLDSSEFVTGF
Sbjct: 181 PEFEIGDGEESVGENSSLDSSEFVTGF 191

[Close]

BLAST of MELO3C025225 vs. ExPASy TrEMBL
Match: A0A1S3CJ78 (high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 8.1e-93
Identity = 191/207 (92.27%), Postives = 191/207 (92.27%), Query Frame = 0


Query: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
           PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMVRFVFYLLIFSYDLNQRISPIRSLREKEREKIFTDAQF 180
           QRDLEMEVDRLFRLKELRSYCM                RISPIRSLREKEREKIFTDAQF
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM----------------RISPIRSLREKEREKIFTDAQF 180

Query: 181 PEFEIGDGEESVGENSSLDSSEFVTGF 208
           PEFEIGDGEESVGENSSLDSSEFVTGF
Sbjct: 181 PEFEIGDGEESVGENSSLDSSEFVTGF 191

[Close]

BLAST of MELO3C025225 vs. ExPASy TrEMBL
Match: A0A5A7SJQ2 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00510 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.2e-92
Identity = 190/207 (91.79%), Postives = 190/207 (91.79%), Query Frame = 0


Query: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
           PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMVRFVFYLLIFSYDLNQRISPIRSLREKEREKIFTDAQF 180
           QRDLEMEVDRLFRLKELRSYCM                RISPIRSLREKEREKIFTDAQF
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM----------------RISPIRSLREKEREKIFTDAQF 180

Query: 181 PEFEIGDGEESVGENSSLDSSEFVTGF 208
           PEFEIGDGEESVGENSSLDSSEFVTGF
Sbjct: 181 PEFEIGDGEESVGENSSLDSSEFVTGF 191

[Close]

BLAST of MELO3C025225 vs. ExPASy TrEMBL
Match: A0A0A0L063 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334650 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.3e-90
Identity = 187/207 (90.34%), Postives = 188/207 (90.82%), Query Frame = 0


Query: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1   MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
           PP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61  PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMVRFVFYLLIFSYDLNQRISPIRSLREKEREKIFTDAQF 180
           QRDLEMEVDRLFRLKELRSYCM                RISPIRSLREKEREKIFTDAQF
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM----------------RISPIRSLREKEREKIFTDAQF 180

Query: 181 PEFEIGDGEESVGENSSLDSSEFVTGF 208
           PEFEIGDGEESVGENSSLDSSEFVTGF
Sbjct: 181 PEFEIGDGEESVGENSSLDSSEFVTGF 191

[Close]

BLAST of MELO3C025225 vs. ExPASy TrEMBL
Match: A0A6J1ISM0 (high mobility group B protein 13-like OS=Cucurbita maxima OX=3661 GN=LOC111478322 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.8e-77
Identity = 164/209 (78.47%), Postives = 177/209 (84.69%), Query Frame = 0


Query: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
           MQ LH PL +P D+PLKSGRRPLQPKNSLPN VP+VAK+IKSKPE IQISL  DANKENH
Sbjct: 1   MQALHQPLATPHDLPLKSGRRPLQPKNSLPNPVPAVAKVIKSKPERIQISLPTDANKENH 60

Query: 61  PP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRS 120
           PP  A   S+ESCDLSLADELNAVKRK+ERLRL+ ERTE+ML+ERD++LELRMKELLQRS
Sbjct: 61  PPIHAKAASVESCDLSLADELNAVKRKLERLRLERERTEQMLKERDMILELRMKELLQRS 120

Query: 121 QEQRDLEMEVDRLFRLKELRSYCMVRFVFYLLIFSYDLNQRISPIRSLREKEREKIFTDA 180
           +EQRDLEMEVDRLFRLKELR YCM                RISPIRSLREKEREKIF DA
Sbjct: 121 KEQRDLEMEVDRLFRLKELRLYCM----------------RISPIRSLREKEREKIFADA 180

Query: 181 QFPEFEIGDGEESVGENSSLDSSEFVTGF 208
           QFPE+EIGDGEESVGENSSLDSSEFVTGF
Sbjct: 181 QFPEYEIGDGEESVGENSSLDSSEFVTGF 193

[Close]

BLAST of MELO3C025225 vs. TAIR 10
Match: AT5G01910.1 (unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 92.4 bits (228), Expect = 4.5e-19
Identity = 72/175 (41.14%), Postives = 98/175 (56.00%), Query Frame = 0


Query: 18  SGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLAD 77
           SGR+ LQP+N +       A  +K K        + +  KEN    T++     D SLA+
Sbjct: 4   SGRKALQPRN-IYQTPKEDAFFVKPK--------AAEKLKENLNLETSI-----DASLAE 63

Query: 78  ELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKEL 137
           EL+A K+K+ERLR D E TEK+L+ERD  ++L M  LLQR + Q+ LE++VDRLFRLKEL
Sbjct: 64  ELSAFKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVDRLFRLKEL 123

Query: 138 RSYCMVRFVFYLLIFSYDLNQRISPIRSLREKEREKIFTDAQFPEFEIGDGEESV 193
            +Y                + +ISPIRSLR KE+++      F   E  D E SV
Sbjct: 124 HAY----------------SSKISPIRSLRAKEQQEKMRRFTFAGEEQPDEESSV 148

[Close]

BLAST of MELO3C025225 vs. TAIR 10
Match: AT5G01910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-18
Identity = 66/156 (42.31%), Postives = 92/156 (58.97%), Query Frame = 0


Query: 18  SGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENHPPATTVSIESCDLSLAD 77
           SGR+ LQP+N +       A  +K K        + +  KEN    T++     D SLA+
Sbjct: 4   SGRKALQPRN-IYQTPKEDAFFVKPK--------AAEKLKENLNLETSI-----DASLAE 63

Query: 78  ELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKEL 137
           EL+A K+K+ERLR D E TEK+L+ERD  ++L M  LLQR + Q+ LE++VDRLFRLKEL
Sbjct: 64  ELSAFKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVDRLFRLKEL 123

Query: 138 RSYCMVRFVFYLLIFSYDLNQRISPIRSLREKEREK 174
            +Y                + +ISPIRSLR KE+++
Sbjct: 124 HAY----------------SSKISPIRSLRAKEQQE 129

The following BLAST results are available for this feature:

BLAST of MELO3C025225 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463266.1	1.7e-92	92.27	PREDICTED: high mobility group B protein 6 [Cucumis melo] >TYK09760.1 high mobil...	[more]
KAA0025412.1	1.1e-91	91.79	high mobility group B protein 6 [Cucumis melo var. makuwa]	[more]
XP_004142680.1	2.7e-90	90.34	high mobility group B protein 6 [Cucumis sativus] >KGN54454.1 hypothetical prote...	[more]
XP_038883293.1	3.5e-82	82.63	uncharacterized protein LOC120074285 [Benincasa hispida]	[more]
KAG7033714.1	3.4e-77	78.67	hypothetical protein SDJN02_03439, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MELO3C025225 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C025225 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CEI7	8.1e-93	92.27	High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CJ78	8.1e-93	92.27	high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=...	[more]
A0A5A7SJQ2	5.2e-92	91.79	High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A0A0L063	1.3e-90	90.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334650 PE=4 SV=1	[more]
A0A6J1ISM0	2.8e-77	78.47	high mobility group B protein 13-like OS=Cucurbita maxima OX=3661 GN=LOC11147832...	[more]

BLAST of MELO3C025225 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01910.1	4.5e-19	41.14	unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bac...	[more]
AT5G01910.2	1.7e-18	42.31	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 79..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR36790	MYELIN TRANSCRIPTION FACTOR	coord: 158..202 coord: 1..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025225.1	MELO3C025225.1	mRNA