MELO3C025163 (gene) Melon (DHL92) v4

Overview


Name	MELO3C025163
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr11: 6561834 .. 6562086 (+)
RNA-Seq Expression	MELO3C025163
Synteny	MELO3C025163

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTTTTTCAAAGAAAATGGAAGCATGGGCGGACGTTGGCGTGGGCGGAGGCGGAATAGTTGGCCGACGTTGAACCGTCGGCGAAAGACACACGGTGAGCGGAAGACAGACGATCGGCGAAAGTTCGTCCGATCGCGAGCAGAAGAGAAATCGAATGTGGGCGACGGTAAATCGGGGAGGAAGAATATTAGAAGAATATTGGAAGGGGTTGAGAACTCACCGATGGTTGGAAGAATATTGGGCAGGAAGATAA

mRNA sequence

GGCTTTTTCAAAGAAAATGGAAGCATGGGCGGACGTTGGCGTGGGCGGAGGCGGAATAGTTGGCCGACGTTGAACCGTCGGCGAAAGACACACGGTGAGCGGAAGACAGACGATCGGCGAAAGTTCGTCCGATCGCGAGCAGAAGAGAAATCGAATGTGGGCGACGGTAAATCGGGGAGGAAGGGGTTGAGAACTCACCGATGGTTGGAAGAATATTGGGCAGGAAGATAA

Coding sequence (CDS)

ATGGGCGGACGTTGGCGTGGGCGGAGGCGGAATAGTTGGCCGACGTTGAACCGTCGGCGAAAGACACACGGTGAGCGGAAGACAGACGATCGGCGAAAGTTCGTCCGATCGCGAGCAGAAGAGAAATCGAATGTGGGCGACGGTAAATCGGGGAGGAAGGGGTTGAGAACTCACCGATGGTTGGAAGAATATTGGGCAGGAAGATAA

Protein sequence

MGGRWRGRRRNSWPTLNRRRKTHGERKTDDRRKFVRSRAEEKSNVGDGKSGRKGLRTHRWLEEYWAGR

Homology

[Close]

BLAST of MELO3C025163 vs. NCBI nr
Match: TYK06520.1 (hypothetical protein E5676_scaffold70G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MGGRWRGRRRNSWPTLNRRRKTHGERKTDDRRKFVRSRAEEKSNVGDGKSGRKGLR 57
          MGGRWRGRRRNSWPTLNRRRKTHGERKTDDRRKFVRSRAEEKSNVGDGKSGRK +R
Sbjct: 1  MGGRWRGRRRNSWPTLNRRRKTHGERKTDDRRKFVRSRAEEKSNVGDGKSGRKNIR 56

[Close]

BLAST of MELO3C025163 vs. NCBI nr
Match: KAA0034864.1 (hypothetical protein E6C27_scaffold515G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 9.0e-11
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 6  RGRRRNSWPTLNRRRKTHGERKTDDRRKFVRSRAEEKSNVGDGKSGR 53
          RGRRRNSWPTLNRRRKTHG++KTD RRK V+ +AEEKSNVGDGKSG+
Sbjct: 2  RGRRRNSWPTLNRRRKTHGQQKTDGRRKSVQPQAEEKSNVGDGKSGQ 48

[Close]

BLAST of MELO3C025163 vs. NCBI nr
Match: KAA0036897.1 (hypothetical protein E6C27_scaffold1480G00210 [Cucumis melo var. makuwa] >KAA0064938.1 hypothetical protein E6C27_scaffold82G002560 [Cucumis melo var. makuwa] >KAA0066623.1 hypothetical protein E6C27_scaffold979G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 4.5e-10
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 6  RGRRRNSWPTLNRRRKTHGERKTDDRRKFVRSRAEEKSNVGDGKSGR 53
          RGRRRNSWPTLNRRRKTHG++KTD RRK V+ +AEEKSNV DGKSG+
Sbjct: 2  RGRRRNSWPTLNRRRKTHGQQKTDGRRKSVQPQAEEKSNVSDGKSGQ 48

[Close]

BLAST of MELO3C025163 vs. NCBI nr
Match: TYK14189.1 (hypothetical protein E5676_scaffold5G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 6  RGRRRNSWPTLNRRRKTHGERKTDDRRKFVRSRAEEKSNVGDGKSGR 53
          RGRRRNSWPTLNRRRKTH ++KTD RRK V+ +AEEKSNV DGKSG+
Sbjct: 2  RGRRRNSWPTLNRRRKTHDQQKTDGRRKSVQPQAEEKSNVSDGKSGQ 48

[Close]

BLAST of MELO3C025163 vs. ExPASy TrEMBL
Match: A0A5D3C5A5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00550 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MGGRWRGRRRNSWPTLNRRRKTHGERKTDDRRKFVRSRAEEKSNVGDGKSGRKGLR 57
          MGGRWRGRRRNSWPTLNRRRKTHGERKTDDRRKFVRSRAEEKSNVGDGKSGRK +R
Sbjct: 1  MGGRWRGRRRNSWPTLNRRRKTHGERKTDDRRKFVRSRAEEKSNVGDGKSGRKNIR 56

[Close]

BLAST of MELO3C025163 vs. ExPASy TrEMBL
Match: A0A5A7SUD8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00300 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.3e-11
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 6  RGRRRNSWPTLNRRRKTHGERKTDDRRKFVRSRAEEKSNVGDGKSGR 53
          RGRRRNSWPTLNRRRKTHG++KTD RRK V+ +AEEKSNVGDGKSG+
Sbjct: 2  RGRRRNSWPTLNRRRKTHGQQKTDGRRKSVQPQAEEKSNVGDGKSGQ 48

[Close]

BLAST of MELO3C025163 vs. ExPASy TrEMBL
Match: A0A5A7VBF1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1480G00210 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-10
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 6  RGRRRNSWPTLNRRRKTHGERKTDDRRKFVRSRAEEKSNVGDGKSGR 53
          RGRRRNSWPTLNRRRKTHG++KTD RRK V+ +AEEKSNV DGKSG+
Sbjct: 2  RGRRRNSWPTLNRRRKTHGQQKTDGRRKSVQPQAEEKSNVSDGKSGQ 48

[Close]

BLAST of MELO3C025163 vs. ExPASy TrEMBL
Match: A0A5D3CVA7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00050 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 6  RGRRRNSWPTLNRRRKTHGERKTDDRRKFVRSRAEEKSNVGDGKSGR 53
          RGRRRNSWPTLNRRRKTH ++KTD RRK V+ +AEEKSNV DGKSG+
Sbjct: 2  RGRRRNSWPTLNRRRKTHDQQKTDGRRKSVQPQAEEKSNVSDGKSGQ 48

The following BLAST results are available for this feature:

BLAST of MELO3C025163 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06520.1	3.6e-20	96.43	hypothetical protein E5676_scaffold70G00550 [Cucumis melo var. makuwa]	[more]
KAA0034864.1	9.0e-11	82.98	hypothetical protein E6C27_scaffold515G00300 [Cucumis melo var. makuwa]	[more]
KAA0036897.1	4.5e-10	80.85	hypothetical protein E6C27_scaffold1480G00210 [Cucumis melo var. makuwa] >KAA006...	[more]
TYK14189.1	2.9e-09	78.72	hypothetical protein E5676_scaffold5G00050 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C025163 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C025163 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5A5	1.8e-20	96.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SUD8	4.3e-11	82.98	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VBF1	2.2e-10	80.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CVA7	1.4e-09	78.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C025163 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025163.1	MELO3C025163.1	mRNA