MELO3C025159.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C025159.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPhosphopantothenoylcysteine decarboxylase subunit VHS3-like
Locationchr10: 8729601 .. 8730288 (-)
RNA-Seq ExpressionMELO3C025159.jh1
SyntenyMELO3C025159.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGATGATCGAATTTGAAGATGGAGATATCACCAAGCTTGATTGGAGATGGAGAAGCGAGACTGCACCAACATATTGGTTGCAGCTCCTGGAAGAAGATGATCCTATCCATTTCAACTGTGTTAAAGATGAAGATGATGATCCCATCGGTTGCGATCGCTTTGAAGATGAAAATGATGATTGTCTCGGTTGTGCCACCTTGAAGATAAAGATGATGATTGTCTCAACTGTGTCACCTTGAAGATAGAGATAATGATTGTCTCGACTACGTCGCATTCAAGATGGAGATGATGATCGTCTCGGTTGCATCGCATTGAAGATAAAGATGATGATCGTCTCGGTTGCATCGCATTGAAGATGAAGATGATGATCATCTCCATTGCATCGTATTGAAGATAAAGATGATGATCGTCTCGGTTGCGTCACATTGAAGATAGAGATAATGATTATCTCAGCTGCGTTGTATTGAAGATGAAGATGAAGATGATCTTCTCGACAGTGGCAACATTGAAGACGAAGATGAAGATCCTCCCGACTGCAAGCGCATTAAAGAAGATGAAGATGATGATCCTCTCAGTTGCGGACACATTGAAGAAGATGGAGATGATAATCCTCTTGACTACAACACGTGTGAGAAGATGAAGATGATGATCCTTTCGACTACAACATATGTGAAAAGATGA

mRNA sequence

ATGAAGATGATGATCGAATTTGAAGATGGAGATATCACCAAGCTTGATTGGAGATGGAGAAGCGAGACTGCACCAACATATTGGTTGCAGCTCCTGGAAGAAGATGATCCTATCCATTTCAACTGTGTTAAAGATGAAGATGATGATCCCATCGGTTGCGATCGCTTTGAAGATGAAAATGATGATTGTCTCGATGAAGATGAAGATGATCTTCTCGACAGTGGCAACATTGAAGACGAAGATGAAGATCCTCCCGACTGCAAGCGCATTAAAGAAGATGAAGATGATGATCCTCTCAGTTGCGGACACATTGAAGAAGATGGAGATGATAATCCTCTTGACTACAACACGTGTGAGAAGATGAAGATGATGATCCTTTCGACTACAACATATGTGAAAAGATGA

Coding sequence (CDS)

ATGAAGATGATGATCGAATTTGAAGATGGAGATATCACCAAGCTTGATTGGAGATGGAGAAGCGAGACTGCACCAACATATTGGTTGCAGCTCCTGGAAGAAGATGATCCTATCCATTTCAACTGTGTTAAAGATGAAGATGATGATCCCATCGGTTGCGATCGCTTTGAAGATGAAAATGATGATTGTCTCGATGAAGATGAAGATGATCTTCTCGACAGTGGCAACATTGAAGACGAAGATGAAGATCCTCCCGACTGCAAGCGCATTAAAGAAGATGAAGATGATGATCCTCTCAGTTGCGGACACATTGAAGAAGATGGAGATGATAATCCTCTTGACTACAACACGTGTGAGAAGATGAAGATGATGATCCTTTCGACTACAACATATGTGAAAAGATGA

Protein sequence

MKMMIEFEDGDITKLDWRWRSETAPTYWLQLLEEDDPIHFNCVKDEDDDPIGCDRFEDENDDCLDEDEDDLLDSGNIEDEDEDPPDCKRIKEDEDDDPLSCGHIEEDGDDNPLDYNTCEKMKMMILSTTTYVKR
Homology
BLAST of MELO3C025159.jh1 vs. NCBI nr
Match: KAA0047572.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa] >TYK14966.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 7.81e-17
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 78  EDEDEDPPDCKRIKEDEDDDPLSCGHIEEDGDDNPLDYNTCEKMKM--MILSTTTYVKR 134
           EDEDEDP DC+ I+EDEDDDPL+  HIEED DD+PLD NTCEKMKM  MILST T V+R
Sbjct: 3   EDEDEDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLDCNTCEKMKMKIMILSTATCVRR 61

BLAST of MELO3C025159.jh1 vs. NCBI nr
Match: XP_008463661.1 (PREDICTED: prostatic spermine-binding protein-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 3.88e-15
Identity = 63/168 (37.50%), Postives = 81/168 (48.21%), Query Frame = 0

Query: 33  EEDDPIHFNCVKDEDDDPIGCDRFEDENDD------CLDEDED----------------- 92
           E+DD I+FN ++DEDDDPIGCDR +D++DD      CLDED+D                 
Sbjct: 42  EDDDSINFNRIEDEDDDPIGCDRIKDKDDDHLCDDDCLDEDKDEDDPLSCSDIEYEDEDD 101

Query: 93  -------------DLLDSGNIEDEDEDPP----------------DCKRIKEDEDDDPLS 134
                        D LD   IEDEDED P                 C  I++++ DDPL 
Sbjct: 102 PFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDENEDHDPFGCGNIEDEDKDDPLD 161

BLAST of MELO3C025159.jh1 vs. NCBI nr
Match: TYK18365.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.80e-14
Identity = 60/149 (40.27%), Postives = 79/149 (53.02%), Query Frame = 0

Query: 2   KMMIEFEDGDITKLDWRWRSETAPTYWLQLLEEDDPIHFNCVKDEDDDPIGCDRFEDEND 61
           + + E EDG         +S T PTY  Q +EEDDPI F+  +D   D I  D  EDE+D
Sbjct: 3   RRLSELEDG---------KSLTTPTYRQQYMEEDDPIDFDNSEDAKHDLINFDSTEDEDD 62

Query: 62  DCL-----DEDEDDLLDSGNIEDEDEDPPDCKRIKED----EDDDPLSCG--------HI 121
           D +     ++++DDL+     EDED+D   C  +K +    EDDD   C         HI
Sbjct: 63  DPIYFDYTEDEDDDLIGCDLFEDEDDDRLGCATLKMEMTIHEDDDLFYCAALKMKMMIHI 122

Query: 122 EEDGDDNPLDYNTCEKMKMMILSTTTYVK 133
            ED D++PL  N CEKMKMMIL   T+ K
Sbjct: 123 GEDEDEDPLSCNICEKMKMMILLVATHGK 142

BLAST of MELO3C025159.jh1 vs. NCBI nr
Match: KAA0037362.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa] >TYJ97544.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.45e-13
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query: 31  LLEEDDPIHFNCVKDEDDDPIGCDRFEDENDDCL 64
           LLEEDDPIHFNCVKDEDDDPIGCDRFEDEND+CL
Sbjct: 88  LLEEDDPIHFNCVKDEDDDPIGCDRFEDENDNCL 121

BLAST of MELO3C025159.jh1 vs. NCBI nr
Match: KAA0035630.1 (prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK30912.1 prostatic spermine-binding protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.76e-13
Identity = 53/104 (50.96%), Postives = 67/104 (64.42%), Query Frame = 0

Query: 34  EDDPIHFNCVKDED-DDPIGCDRFEDENDDCLDEDEDDLLDSGNIEDEDEDPP-DCKRIK 93
           +DD + F  ++DED DDP+G D  EDEN+D       D    GNIEDED+D P DC  I+
Sbjct: 26  KDDTLDFLRIEDEDEDDPLGYDIIEDENEDH------DPFGCGNIEDEDKDDPLDCGYIE 85

Query: 94  EDEDDDPLSCGHIEEDGDDNPLDYNTCE-KMKMMILSTTTYVKR 134
           ++++DDPL C  IE D DD+PL  NT + KM MMIL   TY KR
Sbjct: 86  DEDEDDPLDCNSIE-DEDDDPLSCNTLKMKMMMMILLAATYGKR 122

BLAST of MELO3C025159.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TVT5 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2754G00160 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.78e-17
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 78  EDEDEDPPDCKRIKEDEDDDPLSCGHIEEDGDDNPLDYNTCEKMKM--MILSTTTYVKR 134
           EDEDEDP DC+ I+EDEDDDPL+  HIEED DD+PLD NTCEKMKM  MILST T V+R
Sbjct: 3   EDEDEDPLDCRCIEEDEDDDPLNYRHIEEDEDDDPLDCNTCEKMKMKIMILSTATCVRR 61

BLAST of MELO3C025159.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CK92 (prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103501754 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.88e-15
Identity = 63/168 (37.50%), Postives = 81/168 (48.21%), Query Frame = 0

Query: 33  EEDDPIHFNCVKDEDDDPIGCDRFEDENDD------CLDEDED----------------- 92
           E+DD I+FN ++DEDDDPIGCDR +D++DD      CLDED+D                 
Sbjct: 42  EDDDSINFNRIEDEDDDPIGCDRIKDKDDDHLCDDDCLDEDKDEDDPLSCSDIEYEDEDD 101

Query: 93  -------------DLLDSGNIEDEDEDPP----------------DCKRIKEDEDDDPLS 134
                        D LD   IEDEDED P                 C  I++++ DDPL 
Sbjct: 102 PFGCGNIEDEGKDDTLDFLRIEDEDEDDPLGYDIIEDENEDHDPFGCGNIEDEDKDDPLD 161

BLAST of MELO3C025159.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D493 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00860 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.70e-15
Identity = 60/149 (40.27%), Postives = 79/149 (53.02%), Query Frame = 0

Query: 2   KMMIEFEDGDITKLDWRWRSETAPTYWLQLLEEDDPIHFNCVKDEDDDPIGCDRFEDEND 61
           + + E EDG         +S T PTY  Q +EEDDPI F+  +D   D I  D  EDE+D
Sbjct: 3   RRLSELEDG---------KSLTTPTYRQQYMEEDDPIDFDNSEDAKHDLINFDSTEDEDD 62

Query: 62  DCL-----DEDEDDLLDSGNIEDEDEDPPDCKRIKED----EDDDPLSCG--------HI 121
           D +     ++++DDL+     EDED+D   C  +K +    EDDD   C         HI
Sbjct: 63  DPIYFDYTEDEDDDLIGCDLFEDEDDDRLGCATLKMEMTIHEDDDLFYCAALKMKMMIHI 122

Query: 122 EEDGDDNPLDYNTCEKMKMMILSTTTYVK 133
            ED D++PL  N CEKMKMMIL   T+ K
Sbjct: 123 GEDEDEDPLSCNICEKMKMMILLVATHGK 142

BLAST of MELO3C025159.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T1P1 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00660 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.00e-14
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query: 31  LLEEDDPIHFNCVKDEDDDPIGCDRFEDENDDCL 64
           LLEEDDPIHFNCVKDEDDDPIGCDRFEDEND+CL
Sbjct: 88  LLEEDDPIHFNCVKDEDDDPIGCDRFEDENDNCL 121

BLAST of MELO3C025159.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SX67 (Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001230 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.34e-13
Identity = 53/104 (50.96%), Postives = 67/104 (64.42%), Query Frame = 0

Query: 34  EDDPIHFNCVKDED-DDPIGCDRFEDENDDCLDEDEDDLLDSGNIEDEDEDPP-DCKRIK 93
           +DD + F  ++DED DDP+G D  EDEN+D       D    GNIEDED+D P DC  I+
Sbjct: 26  KDDTLDFLRIEDEDEDDPLGYDIIEDENEDH------DPFGCGNIEDEDKDDPLDCGYIE 85

Query: 94  EDEDDDPLSCGHIEEDGDDNPLDYNTCE-KMKMMILSTTTYVKR 134
           ++++DDPL C  IE D DD+PL  NT + KM MMIL   TY KR
Sbjct: 86  DEDEDDPLDCNSIE-DEDDDPLSCNTLKMKMMMMILLAATYGKR 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0047572.17.81e-1774.58phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
XP_008463661.13.88e-1537.50PREDICTED: prostatic spermine-binding protein-like [Cucumis melo][more]
TYK18365.11.80e-1440.27phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
KAA0037362.11.45e-1397.06phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
KAA0035630.12.76e-1350.96prostatic spermine-binding protein-like [Cucumis melo var. makuwa] >TYK30912.1 p... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TVT53.78e-1774.58Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A1S3CK921.88e-1537.50prostatic spermine-binding protein-like OS=Cucumis melo OX=3656 GN=LOC103501754 ... [more]
A0A5D3D4938.70e-1540.27Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A5A7T1P17.00e-1497.06Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A5A7SX671.34e-1350.96Prostatic spermine-binding protein-like OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025159.jh1.t1MELO3C025159.jh1.t1mRNA