MELO3C025084 (gene) Melon (DHL92) v4

Overview


Name	MELO3C025084
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr09: 14469971 .. 14470802 (+)
RNA-Seq Expression	MELO3C025084
Synteny	MELO3C025084

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTGCTCATTTAGTGATGCGATGGCATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCTATTTGATATGAATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACTCAACCGGGAGCTGCTATGAGTCATCTGGTATACATTTAAAAATTGTATAGTTGTTTTTAGTGAAAATTTATTTTCAATGATTTCTAATTCATTTTAATATTTTACAGAGATCGAACAATATTAGACTTTGAAATGTTGCAGATGATCCACAATAGGTTCTAAAAATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTTTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGAAAGAAGTGCCTCCCATGACACAGACACAGACACAAAGCGAGCATAGTTATGTTAGTCCAGTAATGATGATGGCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAATAGAATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATATTATGATTTAGGAAGTTATCCATCGTCTTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTCCGAAGTGCCTGCAGCGATACCCGAGTAATCAGATGAGCAACAACAACAAGAGAATCATGAGGAAATACAACAACAAAGAGTTCAAAGTCGACGACGACAACAGCTAGAAATCGTCGACGTCCAGGTTG

mRNA sequence

AGTTGCTCATTTAGTGATGCGATGGCATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCTATTTGATATGAATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACTCAACCGGGAGCTGCTATGAGTCATCTGAGATCGAACAATATTAGACTTTGAAATGTTGCAGATGATCCACAATAGGTTCTAAAAATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTTTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGAAAGAAGTGCCTCCCATGACACAGACACAGACACAAAGCGAGCATAGTTATGTTAGTCCAGTAATGATGATGGCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAATAGAATATTACAATTCAGAGGCAGGAAGTTATCCATCGTCTTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTCCGAAGTGCCTGCAGCGATACCCGAGTAATCAGATGAGCAACAACAACAAGAGAATCATGAGGAAATACAACAACAAAGAGTTCAAAGTCGACGACGACAACAGCTAGAAATCGTCGACGTCCAGGTTG

Coding sequence (CDS)

ATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTTTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGAAAGAAGTGCCTCCCATGACACAGACACAGACACAAAGCGAGCATAGTTATGTTAGTCCAGTAATGATGATGGCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAATAGAATATTACAATTCAGAGGCAGGAAGTTATCCATCGTCTTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTCCGAAGTGCCTGCAGCGATACCCGAGTAA

Protein sequence

MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQTQSEHSYVSPVMMMATFGTTYYDSGVGQSSDFGIEYYNSEAGSYPSSSYMHGHGRGRGEHNEYLYSEVPAAIPE

Homology

[Close]

BLAST of MELO3C025084 vs. NCBI nr
Match: KAA0046268.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK18932.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58
Identity = 121/135 (89.63%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQTQSEHSYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQTQSEHSYVSPVMM
Sbjct: 376 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQTQSEHSYVSPVMM 435

Query: 61  MATFGTTYYDSGVGQSSDFGIEYYNSEA--------------GSYPSSSYMHGHGRGRGE 120
           MATFGTTYYDSGVGQSSDFGIEYYNSEA              GSYPSSSYMHGHGRGRGE
Sbjct: 436 MATFGTTYYDSGVGQSSDFGIEYYNSEAGQSSTDFGQQYYDLGSYPSSSYMHGHGRGRGE 495

Query: 121 HNEYLYSEVPAAIPE 122
           HNEYLYSEVPAAIPE
Sbjct: 496 HNEYLYSEVPAAIPE 510

[Close]

BLAST of MELO3C025084 vs. NCBI nr
Match: TYK18891.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-53
Identity = 113/135 (83.70%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQTQSEHSYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHG+EVPPMTQTQTQSEH+YVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200

Query: 61  MATFGTTYYDSGVGQSSDFGIEYYNSEA--------------GSYPSSSYMHGHGRGRGE 120
           M TFGTTYYDSGVGQSSDFG  YYNSEA              GS PSSSYMHGHGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 260

Query: 121 HNEYLYSEVPAAIPE 122
           HNEYLY EVPAA+PE
Sbjct: 261 HNEYLYYEVPAAVPE 275

[Close]

BLAST of MELO3C025084 vs. NCBI nr
Match: KAA0051233.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 215.7 bits (548), Expect = 2.2e-52
Identity = 111/135 (82.22%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQTQSEHSYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHG+EVPPMTQTQTQSEH+YVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200

Query: 61  MATFGTTYYDSGVGQSSDFGIEYYNSEA--------------GSYPSSSYMHGHGRGRGE 120
           M TFGTTYYDSGVGQSSDFG  YYNSEA              GS PSSSYMH HGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 260

Query: 121 HNEYLYSEVPAAIPE 122
           HNEYLY EVPAA+P+
Sbjct: 261 HNEYLYYEVPAAVPK 275

[Close]

BLAST of MELO3C025084 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-51
Identity = 110/135 (81.48%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQTQSEHSYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHG+EVPPMTQTQTQSEH+YVSPVMM
Sbjct: 57  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 116

Query: 61  MATFGTTYYDSGVGQSSDFGIEYYNSEA--------------GSYPSSSYMHGHGRGRGE 120
           M TFG TYYDSGVGQSSDFG  YYNSEA              GS PSSSYMHGHGRGRGE
Sbjct: 117 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 176

Query: 121 HNEYLYSEVPAAIPE 122
           HNEYLY +VPAA+PE
Sbjct: 177 HNEYLYYKVPAAVPE 191

[Close]

BLAST of MELO3C025084 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-51
Identity = 110/135 (81.48%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQTQSEHSYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHG+EVPPMTQTQTQSEH+YVSPVMM
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 136

Query: 61  MATFGTTYYDSGVGQSSDFGIEYYNSEA--------------GSYPSSSYMHGHGRGRGE 120
           M TFG TYYDSGVGQSSDFG  YYNSEA              GS PSSSYMHGHGRGRGE
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 196

Query: 121 HNEYLYSEVPAAIPE 122
           HNEYLY +VPAA+PE
Sbjct: 197 HNEYLYYKVPAAVPE 211

[Close]

BLAST of MELO3C025084 vs. ExPASy TrEMBL
Match: A0A5A7TTS7 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00140 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 5.8e-59
Identity = 121/135 (89.63%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQTQSEHSYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQTQSEHSYVSPVMM
Sbjct: 376 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQTQSEHSYVSPVMM 435

Query: 61  MATFGTTYYDSGVGQSSDFGIEYYNSEA--------------GSYPSSSYMHGHGRGRGE 120
           MATFGTTYYDSGVGQSSDFGIEYYNSEA              GSYPSSSYMHGHGRGRGE
Sbjct: 436 MATFGTTYYDSGVGQSSDFGIEYYNSEAGQSSTDFGQQYYDLGSYPSSSYMHGHGRGRGE 495

Query: 121 HNEYLYSEVPAAIPE 122
           HNEYLYSEVPAAIPE
Sbjct: 496 HNEYLYSEVPAAIPE 510

[Close]

BLAST of MELO3C025084 vs. ExPASy TrEMBL
Match: A0A5D3D5R5 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001010 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.7e-54
Identity = 113/135 (83.70%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQTQSEHSYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHG+EVPPMTQTQTQSEH+YVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200

Query: 61  MATFGTTYYDSGVGQSSDFGIEYYNSEA--------------GSYPSSSYMHGHGRGRGE 120
           M TFGTTYYDSGVGQSSDFG  YYNSEA              GS PSSSYMHGHGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 260

Query: 121 HNEYLYSEVPAAIPE 122
           HNEYLY EVPAA+PE
Sbjct: 261 HNEYLYYEVPAAVPE 275

[Close]

BLAST of MELO3C025084 vs. ExPASy TrEMBL
Match: A0A5A7U5S8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00410 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 111/135 (82.22%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQTQSEHSYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHG+EVPPMTQTQTQSEH+YVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200

Query: 61  MATFGTTYYDSGVGQSSDFGIEYYNSEA--------------GSYPSSSYMHGHGRGRGE 120
           M TFGTTYYDSGVGQSSDFG  YYNSEA              GS PSSSYMH HGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 260

Query: 121 HNEYLYSEVPAAIPE 122
           HNEYLY EVPAA+P+
Sbjct: 261 HNEYLYYEVPAAVPK 275

[Close]

BLAST of MELO3C025084 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.9e-52
Identity = 110/135 (81.48%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQTQSEHSYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHG+EVPPMTQTQTQSEH+YVSPVMM
Sbjct: 820 MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 879

Query: 61  MATFGTTYYDSGVGQSSDFGIEYYNSEA--------------GSYPSSSYMHGHGRGRGE 120
           M TFG TYYDSGVGQSSDFG  YYNSEA              GS PSSSYMHGHGRGRGE
Sbjct: 880 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 939

Query: 121 HNEYLYSEVPAAIPE 122
           HNEYLY +VPAA+PE
Sbjct: 940 HNEYLYYKVPAAVPE 954

[Close]

BLAST of MELO3C025084 vs. ExPASy TrEMBL
Match: A0A1S3BLK4 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.9e-52
Identity = 110/135 (81.48%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQTQSEHSYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHG+EVPPMTQTQTQSEH+YVSPVMM
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 136

Query: 61  MATFGTTYYDSGVGQSSDFGIEYYNSEA--------------GSYPSSSYMHGHGRGRGE 120
           M TFG TYYDSGVGQSSDFG  YYNSEA              GS PSSSYMHGHGRGRGE
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 196

Query: 121 HNEYLYSEVPAAIPE 122
           HNEYLY +VPAA+PE
Sbjct: 197 HNEYLYYKVPAAVPE 211

The following BLAST results are available for this feature:

BLAST of MELO3C025084 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046268.1	1.2e-58	89.63	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK18891.1	1.2e-53	83.70	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0051233.1	2.2e-52	82.22	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
XP_016900498.1	1.4e-51	81.48	PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi...	[more]
XP_008449513.1	1.4e-51	81.48	PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X...	[more]

BLAST of MELO3C025084 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C025084 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTS7	5.8e-59	89.63	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3D5R5	5.7e-54	83.70	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7U5S8	1.1e-52	82.22	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DUI1	6.9e-52	81.48	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A1S3BLK4	6.9e-52	81.48	mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of MELO3C025084 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025084.1	MELO3C025084.1	mRNA