MELO3C024928 (gene) Melon (DHL92) v4

Overview
NameMELO3C024928
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase domain-containing protein
Locationchr01: 10667066 .. 10667386 (+)
RNA-Seq ExpressionMELO3C024928
SyntenyMELO3C024928
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCAATGGAAGTGCAATTTCTTTTATTGGTGGTAAGGAAGTTTTTTTGAAGTCATTGAACCAAACTCTCCCTACTTATGCTATGTCTTGTCTTAAACTCAAAAATTTTGTTTGGATTGGGGTGACTAAAGCTATGACTCATTTTTGGTGGGGTTCTTCGGATGGGAATAAAGAAATCCATTGGATTAACTGGAAGACCACGTATTTACTGAAGGATTTGAGTGGTATGAGGTTCAGGAATTTTGAAGTTTTCAATCAAGCACTTCTTACTAATCAAGCATGGTGTATCTGTCAATGTCCCTATACTCTATTGGCTTGA

mRNA sequence

ATGCTCAATGGAAGTGCAATTTCTTTTATTGGTGGTAAGGAAGTTTTTTTGAAGTCATTGAACCAAACTCTCCCTACTTATGCTATGTCTTGTCTTAAACTCAAAAATTTTGTTTGGATTGGGGTGACTAAAGCTATGACTCATTTTTGGTGGGGTTCTTCGGATGGGAATAAAGAAATCCATTGGATTAACTGGAAGACCACGTATTTACTGAAGGATTTGAGTGGTATGAGGTTCAGGAATTTTGAAGTTTTCAATCAAGCACTTCTTACTAATCAAGCATGGTGTATCTGTCAATGTCCCTATACTCTATTGGCTTGA

Coding sequence (CDS)

ATGCTCAATGGAAGTGCAATTTCTTTTATTGGTGGTAAGGAAGTTTTTTTGAAGTCATTGAACCAAACTCTCCCTACTTATGCTATGTCTTGTCTTAAACTCAAAAATTTTGTTTGGATTGGGGTGACTAAAGCTATGACTCATTTTTGGTGGGGTTCTTCGGATGGGAATAAAGAAATCCATTGGATTAACTGGAAGACCACGTATTTACTGAAGGATTTGAGTGGTATGAGGTTCAGGAATTTTGAAGTTTTCAATCAAGCACTTCTTACTAATCAAGCATGGTGTATCTGTCAATGTCCCTATACTCTATTGGCTTGA

Protein sequence

MLNGSAISFIGGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTYLLKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA
Homology
BLAST of MELO3C024928 vs. NCBI nr
Match: XP_013709367.1 (uncharacterized protein LOC106413079 [Brassica napus])

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-19
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 10  IGGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTY 69
           +GGKEV LK++    P YAMSC KL       +T AM+ FWW S +   +IHW+ W +  
Sbjct: 708 LGGKEVLLKAVALAFPVYAMSCFKLPKTTIANLTSAMSSFWWNSMEQKNKIHWVKWDSLC 767

Query: 70  LLKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
           L KDL G+ F++ E FNQALL NQAW + Q P +L+A
Sbjct: 768 LPKDLGGLGFKDLESFNQALLANQAWKVIQNPNSLIA 804

BLAST of MELO3C024928 vs. NCBI nr
Match: XP_013709368.1 (uncharacterized protein LOC106413080 [Brassica napus])

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-19
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 10  IGGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTY 69
           +GGKEV LK++    P YAMSC KL       +T AM+ FWW S +   +IHW+ W +  
Sbjct: 266 LGGKEVLLKAVALAFPVYAMSCFKLPKTTIANLTSAMSSFWWNSMEQKNKIHWVKWDSLC 325

Query: 70  LLKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
           L KDL G+ F++ E FNQALL NQAW + Q P +L+A
Sbjct: 326 LPKDLGGLGFKDLESFNQALLANQAWKVIQNPNSLIA 362

BLAST of MELO3C024928 vs. NCBI nr
Match: XP_030497600.1 (uncharacterized protein LOC115713257 [Cannabis sativa])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 0

Query: 10  IGGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTY 69
           IGGKEV LK++ Q +PTYAMSC +L       +   M  FWWGSS  NK+IHW NWK+  
Sbjct: 800 IGGKEVLLKAVVQAIPTYAMSCFRLSAKFCKQIETMMARFWWGSSTDNKKIHWKNWKSLC 859

Query: 70  LLKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
             K   G+ FR+F  FNQA L  QAW I Q P +LL+
Sbjct: 860 TSKRDGGLGFRSFVHFNQAFLAKQAWRIFQTPNSLLS 896

BLAST of MELO3C024928 vs. NCBI nr
Match: XP_018460558.1 (PREDICTED: uncharacterized protein LOC108831512 [Raphanus sativus])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 0

Query: 10  IGGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTY 69
           +GGKE+ LK++    P YAMSC KL       +T AM+HFWW S +   +IHWI W+T  
Sbjct: 547 LGGKEILLKAVALAFPVYAMSCFKLPKTTIANLTSAMSHFWWDSVEHKHKIHWIKWETLC 606

Query: 70  LLKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLL 106
           L K L G+ F++ E FNQA+L  QAW I Q P +L+
Sbjct: 607 LPKKLGGLGFKDLESFNQAMLAKQAWKILQNPNSLI 642

BLAST of MELO3C024928 vs. NCBI nr
Match: XP_019085587.1 (PREDICTED: uncharacterized protein LOC109126474 [Camelina sativa])

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-18
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 9   FIGGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTT 68
           F GGKE+ LKS+  T+P YAMSC KL       +T AM+ FWW S++  +++HWI WK  
Sbjct: 10  FQGGKEILLKSVAMTMPVYAMSCFKLPKKTCENLTSAMSAFWWNSTEDKRKMHWIGWKKL 69

Query: 69  YLLKDLSGMRFRNFEVFNQALLTNQAWCICQ 100
            + K L G+ F++ ++FNQALL  QAW I Q
Sbjct: 70  CIPKHLGGLGFKDIQIFNQALLAKQAWRILQ 100

BLAST of MELO3C024928 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-12
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 0

Query: 24  LPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINW-KTTYLLKDLSGMRFRNF 83
           LP YAMSC +L   +   +T AMT FWW S +  ++I W+ W K     +D  G+ FR+ 
Sbjct: 3   LPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDL 62

Query: 84  EVFNQALLTNQAWCICQCPYTLLA 107
             FNQALL  Q++ I   P+TLL+
Sbjct: 63  GWFNQALLAKQSFRIIHQPHTLLS 86

BLAST of MELO3C024928 vs. ExPASy TrEMBL
Match: A0A6J0LKS2 (uncharacterized protein LOC108831512 OS=Raphanus sativus OX=3726 GN=LOC108831512 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.8e-19
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 0

Query: 10  IGGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTY 69
           +GGKE+ LK++    P YAMSC KL       +T AM+HFWW S +   +IHWI W+T  
Sbjct: 547 LGGKEILLKAVALAFPVYAMSCFKLPKTTIANLTSAMSHFWWDSVEHKHKIHWIKWETLC 606

Query: 70  LLKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLL 106
           L K L G+ F++ E FNQA+L  QAW I Q P +L+
Sbjct: 607 LPKKLGGLGFKDLESFNQAMLAKQAWKILQNPNSLI 642

BLAST of MELO3C024928 vs. ExPASy TrEMBL
Match: A0A803PIB6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.8e-19
Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 0

Query: 10   IGGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTY 69
            IGGKEV LK++ Q +PTYAMSC +L       +   M  FWWGSS  NK+IHW NWK+  
Sbjct: 1260 IGGKEVLLKAVVQAIPTYAMSCFRLSAKFCKQIETMMARFWWGSSTDNKKIHWKNWKSLC 1319

Query: 70   LLKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
              K   G+ FR+F  FNQA L  QAW I Q P +LL+
Sbjct: 1320 TSKRDGGLGFRSFVHFNQAFLAKQAWRIFQTPNSLLS 1356

BLAST of MELO3C024928 vs. ExPASy TrEMBL
Match: A0A1J3DQV4 (Putative mitochondrial protein OS=Noccaea caerulescens OX=107243 GN=GA_TR15869_c5_g1_i1_g.49344 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.8e-19
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 0

Query: 11  GGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTYL 70
           GGKE  LKS+   +P YAMSC +L   +   + +AM  FWW S +  K+IHWI+W+   L
Sbjct: 84  GGKETLLKSVMTAMPVYAMSCFRLPKGICSKLRRAMAEFWWSSVENKKKIHWISWEKMCL 143

Query: 71  LKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
            K+L GM FR+ E FNQALL  QAW + Q P +L+A
Sbjct: 144 PKNLGGMGFRDIEDFNQALLAKQAWRVLQEPESLVA 179

BLAST of MELO3C024928 vs. ExPASy TrEMBL
Match: A0A6J0K8K3 (uncharacterized protein LOC108815736 OS=Raphanus sativus OX=3726 GN=LOC108815736 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18
Identity = 46/96 (47.92%), Postives = 58/96 (60.42%), Query Frame = 0

Query: 11   GGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTYL 70
            GGKE+ LK+    LP Y MSC KL   V   ++ AM  +WWG S   ++IHWI+W    L
Sbjct: 1240 GGKEILLKATASALPVYPMSCFKLPKTVLRNLSSAMADYWWGDSAHQRKIHWISWDVLCL 1299

Query: 71   LKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
             KD+ GM FR+ E FNQALL  QAW +   P  L+A
Sbjct: 1300 PKDMGGMGFRDLEAFNQALLAKQAWKLLSSPDCLMA 1335

BLAST of MELO3C024928 vs. ExPASy TrEMBL
Match: A0A1J3DD75 (Putative mitochondrial protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR3085_c4_g1_i1_g.9763 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18
Identity = 49/96 (51.04%), Postives = 60/96 (62.50%), Query Frame = 0

Query: 11  GGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTYL 70
           GGKEV LKS+   +P YAMSC KL   +   +  AM  FWW S +  K+IHWI+W+   L
Sbjct: 33  GGKEVLLKSVLSAMPVYAMSCFKLPKGICKKLRSAMAEFWWSSVENKKKIHWISWEKMCL 92

Query: 71  LKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
            K L GM FR+   FNQALL  QAW I Q P +L+A
Sbjct: 93  PKHLGGMGFRDIVDFNQALLAKQAWRILQEPESLMA 128

BLAST of MELO3C024928 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 73.9 bits (180), Expect = 8.4e-14
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 0

Query: 24  LPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINW-KTTYLLKDLSGMRFRNF 83
           LP YAMSC +L   +   +T AMT FWW S +  ++I W+ W K     +D  G+ FR+ 
Sbjct: 3   LPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDL 62

Query: 84  EVFNQALLTNQAWCICQCPYTLLA 107
             FNQALL  Q++ I   P+TLL+
Sbjct: 63  GWFNQALLAKQSFRIIHQPHTLLS 86

BLAST of MELO3C024928 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 7.4e-10
Identity = 29/83 (34.94%), Postives = 40/83 (48.19%), Query Frame = 0

Query: 24  LPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTYLLKDLSGMRFRNFE 83
           LPTY M+C  L   V   +   +  FWW +    K +HW  W      K   G+ F++ E
Sbjct: 3   LPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIE 62

Query: 84  VFNQALLTNQAWCICQCPYTLLA 107
            FN ALL  Q W +   P +L+A
Sbjct: 63  AFNLALLGKQMWRMLSRPESLMA 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_013709367.12.8e-1948.45uncharacterized protein LOC106413079 [Brassica napus][more]
XP_013709368.12.8e-1948.45uncharacterized protein LOC106413080 [Brassica napus][more]
XP_030497600.11.4e-1851.55uncharacterized protein LOC115713257 [Cannabis sativa][more]
XP_018460558.11.4e-1847.92PREDICTED: uncharacterized protein LOC108831512 [Raphanus sativus][more]
XP_019085587.12.4e-1848.35PREDICTED: uncharacterized protein LOC109126474 [Camelina sativa][more]
Match NameE-valueIdentityDescription
P932951.2e-1242.86Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A6J0LKS26.8e-1947.92uncharacterized protein LOC108831512 OS=Raphanus sativus OX=3726 GN=LOC108831512... [more]
A0A803PIB66.8e-1951.55Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A1J3DQV46.8e-1948.96Putative mitochondrial protein OS=Noccaea caerulescens OX=107243 GN=GA_TR15869_c... [more]
A0A6J0K8K31.5e-1847.92uncharacterized protein LOC108815736 OS=Raphanus sativus OX=3726 GN=LOC108815736... [more]
A0A1J3DD751.5e-1851.04Putative mitochondrial protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=G... [more]
Match NameE-valueIdentityDescription
ATMG00310.18.4e-1442.86RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT4G29090.17.4e-1034.94Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 11..95
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 11..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024928.1MELO3C024928.1mRNA