MELO3C024923 (gene) Melon (DHL92) v4

Overview
NameMELO3C024923
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Locationchr01: 10796914 .. 10797090 (+)
RNA-Seq ExpressionMELO3C024923
SyntenyMELO3C024923
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGAATGATGAAGGAGCAATCGAGATCAACCAGCAAAATGAAAGCAAAGATAACAAAGTTGATCGACGAACCTAACCCGACAGAAAAGGAGAACGAAGAGAAGAACAACAATTGGAACAAGTTCAAAAAAGTCAAAATGCCGATATTCAACGACGACAACCCGGATGCGTAG

mRNA sequence

ATGGAAGGAATGATGAAGGAGCAATCGAGATCAACCAGCAAAATGAAAGCAAAGATAACAAAGTTGATCGACGAACCTAACCCGACAGAAAAGGAGAACGAAGAGAAGAACAACAATTGGAACAAGTTCAAAAAAGTCAAAATGCCGATATTCAACGACGACAACCCGGATGCGTAG

Coding sequence (CDS)

ATGGAAGGAATGATGAAGGAGCAATCGAGATCAACCAGCAAAATGAAAGCAAAGATAACAAAGTTGATCGACGAACCTAACCCGACAGAAAAGGAGAACGAAGAGAAGAACAACAATTGGAACAAGTTCAAAAAAGTCAAAATGCCGATATTCAACGACGACAACCCGGATGCGTAG

Protein sequence

MEGMMKEQSRSTSKMKAKITKLIDEPNPTEKENEEKNNNWNKFKKVKMPIFNDDNPDA
Homology
BLAST of MELO3C024923 vs. NCBI nr
Match: TYJ99899.1 (putative UDP-3-O-acyl-N-acetylglucosamine deacetylase 2 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 0

Query: 1   MEGMMKEQ------SRSTSKMKAKITKLIDEPNPTEKENEEKNNNWNKFKKVKMPIFNDD 59
           +EGMMKEQ        STSKMK K+ +LIDEP  +EKE++EK+++ NKFKK++MPIFN +
Sbjct: 176 IEGMMKEQLSTQESEGSTSKMKTKVAELIDEPKFSEKEDKEKSSDLNKFKKIEMPIFNGN 235

BLAST of MELO3C024923 vs. NCBI nr
Match: TYJ95742.1 (auxilin-related protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 1   MEGMMKEQSR------STSKMKAKITKLIDEPNPTEKENEEKNNNWNKFKKVKMPIFNDD 58
           +EGMMKEQS       STSK+KA IT+  +E NP E E EEKNN+ +KFKKV+MP+FN +
Sbjct: 603 IEGMMKEQSTSRESEGSTSKLKAIITEFAEEQNPNEMEGEEKNNDRSKFKKVEMPVFNSE 662

BLAST of MELO3C024923 vs. NCBI nr
Match: KAA0055509.1 (auxilin-related protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 1   MEGMMKEQSR------STSKMKAKITKLIDEPNPTEKENEEKNNNWNKFKKVKMPIFNDD 58
           +EGMMKEQS       STSK+KA IT+  +E NP E E EEKNN+ +KFKKV+MP+FN +
Sbjct: 604 IEGMMKEQSTSRESEGSTSKLKAIITEFAEEQNPNEMEGEEKNNDRSKFKKVEMPVFNSE 663

BLAST of MELO3C024923 vs. NCBI nr
Match: TYK10830.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 1   MEGMMKEQS------RSTSKMKAKITKLIDEPNPTEKENEEKNNNWNKFKKVKMPIFNDD 59
           +EGMMKE+S       S+SKMK K+ +LIDE N  EK+ EEKNN+ +KFKK++MP+FN +
Sbjct: 58  IEGMMKERSITHESDGSSSKMKTKMAELIDEVNGNEKDGEEKNNDRSKFKKIEMPVFNGE 117

BLAST of MELO3C024923 vs. NCBI nr
Match: KAA0036018.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 5.1e-07
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 6  KEQSRSTSKMKAKITKLIDEPNPTEKENEEKNNNWNKFKKVKMPIFNDDNPDA 59
          +E   STSK K K+T+LIDE N  EK  EEKNN+ +KFKKV+MP+FN ++PDA
Sbjct: 9  RESEESTSKAKTKVTELIDEGNENEKNGEEKNNDRSKFKKVEMPVFNGEDPDA 61

BLAST of MELO3C024923 vs. ExPASy TrEMBL
Match: A0A5D3BLM9 (Putative UDP-3-O-acyl-N-acetylglucosamine deacetylase 2 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00110 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.7e-09
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 0

Query: 1   MEGMMKEQ------SRSTSKMKAKITKLIDEPNPTEKENEEKNNNWNKFKKVKMPIFNDD 59
           +EGMMKEQ        STSKMK K+ +LIDEP  +EKE++EK+++ NKFKK++MPIFN +
Sbjct: 176 IEGMMKEQLSTQESEGSTSKMKTKVAELIDEPKFSEKEDKEKSSDLNKFKKIEMPIFNGN 235

BLAST of MELO3C024923 vs. ExPASy TrEMBL
Match: A0A5D3B7B9 (Auxilin-related protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold282G00470 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.5e-08
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 1   MEGMMKEQSR------STSKMKAKITKLIDEPNPTEKENEEKNNNWNKFKKVKMPIFNDD 58
           +EGMMKEQS       STSK+KA IT+  +E NP E E EEKNN+ +KFKKV+MP+FN +
Sbjct: 603 IEGMMKEQSTSRESEGSTSKLKAIITEFAEEQNPNEMEGEEKNNDRSKFKKVEMPVFNSE 662

BLAST of MELO3C024923 vs. ExPASy TrEMBL
Match: A0A5A7UPX0 (Auxilin-related protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00890 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.5e-08
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 1   MEGMMKEQSR------STSKMKAKITKLIDEPNPTEKENEEKNNNWNKFKKVKMPIFNDD 58
           +EGMMKEQS       STSK+KA IT+  +E NP E E EEKNN+ +KFKKV+MP+FN +
Sbjct: 604 IEGMMKEQSTSRESEGSTSKLKAIITEFAEEQNPNEMEGEEKNNDRSKFKKVEMPVFNSE 663

BLAST of MELO3C024923 vs. ExPASy TrEMBL
Match: A0A5D3CHI3 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001490 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.5e-08
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 1   MEGMMKEQS------RSTSKMKAKITKLIDEPNPTEKENEEKNNNWNKFKKVKMPIFNDD 59
           +EGMMKE+S       S+SKMK K+ +LIDE N  EK+ EEKNN+ +KFKK++MP+FN +
Sbjct: 58  IEGMMKERSITHESDGSSSKMKTKMAELIDEVNGNEKDGEEKNNDRSKFKKIEMPVFNGE 117

BLAST of MELO3C024923 vs. ExPASy TrEMBL
Match: A0A5A7SZK8 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00030 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-07
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 0

Query: 6  KEQSRSTSKMKAKITKLIDEPNPTEKENEEKNNNWNKFKKVKMPIFNDDNPDA 59
          +E   STSK K K+T+LIDE N  EK  EEKNN+ +KFKKV+MP+FN ++PDA
Sbjct: 9  RESEESTSKAKTKVTELIDEGNENEKNGEEKNNDRSKFKKVEMPVFNGEDPDA 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYJ99899.11.6e-0859.38putative UDP-3-O-acyl-N-acetylglucosamine deacetylase 2 isoform X3 [Cucumis melo... [more]
TYJ95742.11.4e-0758.73auxilin-related protein 2 [Cucumis melo var. makuwa][more]
KAA0055509.11.4e-0758.73auxilin-related protein 2 [Cucumis melo var. makuwa][more]
TYK10830.11.8e-0756.25transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa][more]
KAA0036018.15.1e-0760.38transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BLM97.7e-0959.38Putative UDP-3-O-acyl-N-acetylglucosamine deacetylase 2 isoform X3 OS=Cucumis me... [more]
A0A5D3B7B96.5e-0858.73Auxilin-related protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7UPX06.5e-0858.73Auxilin-related protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A5D3CHI38.5e-0856.25Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7SZK82.5e-0760.38Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024923.1MELO3C024923.1mRNA