MELO3C024904.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C024904.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Locationchr01: 11460568 .. 11460759 (-)
RNA-Seq ExpressionMELO3C024904.jh1
SyntenyMELO3C024904.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGAAAGTAGAAGAAAGATTCAAGGTCGTCGAACAAGAGATCGCAAGTATTAGAGAAGAATTACAACAATTGCCGGAGATTGAAGCAAAATTCATGAAGCATATGGAACAAATGAACCTTCAGAACGAGAAGAGTCACCAGCAGCAACAAATGATCTTAAATTACATCGAAAGTATCATGAAATAA

mRNA sequence

ATGGCGAAGAAAGTAGAAGAAAGATTCAAGGTCGTCGAACAAGAGATCGCAAGTATTAGAGAAGAATTACAACAATTGCCGGAGATTGAAGCAAAATTCATGAAGCATATGGAACAAATGAACCTTCAGAACGAGAAGAGTCACCAGCAGCAACAAATGATCTTAAATTACATCGAAAGTATCATGAAATAA

Coding sequence (CDS)

ATGGCGAAGAAAGTAGAAGAAAGATTCAAGGTCGTCGAACAAGAGATCGCAAGTATTAGAGAAGAATTACAACAATTGCCGGAGATTGAAGCAAAATTCATGAAGCATATGGAACAAATGAACCTTCAGAACGAGAAGAGTCACCAGCAGCAACAAATGATCTTAAATTACATCGAAAGTATCATGAAATAA

Protein sequence

MAKKVEERFKVVEQEIASIREELQQLPEIEAKFMKHMEQMNLQNEKSHQQQQMILNYIESIMK
Homology
BLAST of MELO3C024904.jh1 vs. NCBI nr
Match: TYK05646.1 (DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 7.07e-18
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 0

Query: 1    MAKKVEERFKVVEQEIASIREELQQLPEIEAKFMKHMEQMNLQNEKSHQQQQMILNYIES 60
            M KKVEER +VVE EIASI+E LQ+LPE+EAK  KHME++N+QNEKS QQQQMILNYIES
Sbjct: 1193 MTKKVEERVEVVELEIASIKENLQRLPELEAKLTKHMERVNIQNEKSQQQQQMILNYIES 1252

Query: 61   IMK 63
            +MK
Sbjct: 1253 MMK 1255

BLAST of MELO3C024904.jh1 vs. NCBI nr
Match: KAA0040604.1 (DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 7.08e-18
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 0

Query: 1    MAKKVEERFKVVEQEIASIREELQQLPEIEAKFMKHMEQMNLQNEKSHQQQQMILNYIES 60
            M KKVEER +VVE EIASI+E LQ+LPE+EAK  KHME++N+QNEKS QQQQMILNYIES
Sbjct: 1251 MTKKVEERVEVVELEIASIKENLQRLPELEAKLTKHMERVNIQNEKSQQQQQMILNYIES 1310

Query: 61   IMK 63
            +MK
Sbjct: 1311 MMK 1313

BLAST of MELO3C024904.jh1 vs. NCBI nr
Match: KAA0065751.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK13775.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 7.70e-15
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 1  MAKKVEERFKVVEQEIASIREELQQLPEIEAKFMKHMEQMNLQNEKSHQQQQMILNYIES 60
          MAKKVEERFK V++EI +I  ELQ+LP++EAK  KHME+++LQNEK+ QQQQ+IL YIE 
Sbjct: 1  MAKKVEERFKAVKEEIMNIITELQRLPQLEAKITKHMEKVDLQNEKNQQQQQLILKYIEG 60

Query: 61 IMK 63
          +MK
Sbjct: 61 MMK 63

BLAST of MELO3C024904.jh1 vs. NCBI nr
Match: TYJ95742.1 (auxilin-related protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 8.12e-14
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1   MAKKVEERFKVVEQEIASIREELQQLPEIEAKFMKHMEQMNLQNEKSHQQQQMILNYIES 60
           MAKK EERF+ VEQEI +I  ELQ++PE+EAK  KH+E+++LQNE++  QQQMIL YIE 
Sbjct: 546 MAKKAEERFEAVEQEIINIHTELQRIPELEAKITKHLEKIDLQNERNQHQQQMILKYIEG 605

Query: 61  IMK 63
           +MK
Sbjct: 606 MMK 608

BLAST of MELO3C024904.jh1 vs. NCBI nr
Match: KAA0055509.1 (auxilin-related protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 8.12e-14
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1   MAKKVEERFKVVEQEIASIREELQQLPEIEAKFMKHMEQMNLQNEKSHQQQQMILNYIES 60
           MAKK EERF+ VEQEI +I  ELQ++PE+EAK  KH+E+++LQNE++  QQQMIL YIE 
Sbjct: 547 MAKKAEERFEAVEQEIINIHTELQRIPELEAKITKHLEKIDLQNERNQHQQQMILKYIEG 606

Query: 61  IMK 63
           +MK
Sbjct: 607 MMK 609

BLAST of MELO3C024904.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C5I4 (DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001080 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.42e-18
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 0

Query: 1    MAKKVEERFKVVEQEIASIREELQQLPEIEAKFMKHMEQMNLQNEKSHQQQQMILNYIES 60
            M KKVEER +VVE EIASI+E LQ+LPE+EAK  KHME++N+QNEKS QQQQMILNYIES
Sbjct: 1193 MTKKVEERVEVVELEIASIKENLQRLPELEAKLTKHMERVNIQNEKSQQQQQMILNYIES 1252

Query: 61   IMK 63
            +MK
Sbjct: 1253 MMK 1255

BLAST of MELO3C024904.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TAW8 (DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001810 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.43e-18
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 0

Query: 1    MAKKVEERFKVVEQEIASIREELQQLPEIEAKFMKHMEQMNLQNEKSHQQQQMILNYIES 60
            M KKVEER +VVE EIASI+E LQ+LPE+EAK  KHME++N+QNEKS QQQQMILNYIES
Sbjct: 1251 MTKKVEERVEVVELEIASIKENLQRLPELEAKLTKHMERVNIQNEKSQQQQQMILNYIES 1310

Query: 61   IMK 63
            +MK
Sbjct: 1311 MMK 1313

BLAST of MELO3C024904.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CQE9 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00370 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.73e-15
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 1  MAKKVEERFKVVEQEIASIREELQQLPEIEAKFMKHMEQMNLQNEKSHQQQQMILNYIES 60
          MAKKVEERFK V++EI +I  ELQ+LP++EAK  KHME+++LQNEK+ QQQQ+IL YIE 
Sbjct: 1  MAKKVEERFKAVKEEIMNIITELQRLPQLEAKITKHMEKVDLQNEKNQQQQQLILKYIEG 60

Query: 61 IMK 63
          +MK
Sbjct: 61 MMK 63

BLAST of MELO3C024904.jh1 vs. ExPASy TrEMBL
Match: A0A5D3B7B9 (Auxilin-related protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold282G00470 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.93e-14
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1   MAKKVEERFKVVEQEIASIREELQQLPEIEAKFMKHMEQMNLQNEKSHQQQQMILNYIES 60
           MAKK EERF+ VEQEI +I  ELQ++PE+EAK  KH+E+++LQNE++  QQQMIL YIE 
Sbjct: 546 MAKKAEERFEAVEQEIINIHTELQRIPELEAKITKHLEKIDLQNERNQHQQQMILKYIEG 605

Query: 61  IMK 63
           +MK
Sbjct: 606 MMK 608

BLAST of MELO3C024904.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UPX0 (Auxilin-related protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00890 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.93e-14
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1   MAKKVEERFKVVEQEIASIREELQQLPEIEAKFMKHMEQMNLQNEKSHQQQQMILNYIES 60
           MAKK EERF+ VEQEI +I  ELQ++PE+EAK  KH+E+++LQNE++  QQQMIL YIE 
Sbjct: 547 MAKKAEERFEAVEQEIINIHTELQRIPELEAKITKHLEKIDLQNERNQHQQQMILKYIEG 606

Query: 61  IMK 63
           +MK
Sbjct: 607 MMK 609

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK05646.17.07e-1876.19DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa][more]
KAA0040604.17.08e-1876.19DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa][more]
KAA0065751.17.70e-1566.67transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK13775.1 t... [more]
TYJ95742.18.12e-1463.49auxilin-related protein 2 [Cucumis melo var. makuwa][more]
KAA0055509.18.12e-1463.49auxilin-related protein 2 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C5I43.42e-1876.19DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TAW83.43e-1876.19DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CQE93.73e-1566.67Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3B7B93.93e-1463.49Auxilin-related protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7UPX03.93e-1463.49Auxilin-related protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 2..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024904.jh1.t1MELO3C024904.jh1.t1mRNA