MELO3C024888 (gene) Melon (DHL92) v4

Overview


Name	MELO3C024888
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Flocculation protein FLO11-like
Location	chr01: 11360120 .. 11360539 (+)
RNA-Seq Expression	MELO3C024888
Synteny	MELO3C024888

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTGGTAAAGAATCAGTTAAGATTTTCTTTTAAGAATGGTCCTGTTCAGAGTTCACATGCAGGCACCTCCTCTGGCCATGCACCTCCTATCACGATCAAAACTGAGGTACCCAACGTCTCTCATCCCCACTTCTCCCAGCCATCTACTTCCTCGTTCATTCTTGGATCTAGGGTTTCCATTGAAACGGTTATTCTAGATTCAAATTTTAATTCCTCGGATGAGGACGATTATGTTGTTCTCTCTAAGTTGCTTAGTCGTTTCAAAAAGAGGGATCAGTCTGGTCAGTCATCGACTCTTGCCTCTGCCCCTCAGGTTATGAGATCATCAACTCGTGTATCTCCTCCCTCTCCGATTTTGCATTCTTTTCCACCATCTCGGGTGATTCCAGATATCCCCACTCGCACTGCAGATTGA

mRNA sequence

ATGGAGTTGGTAAAGAATCAGTTAAGATTTTCTTTTAAGAATGGTCCTGTTCAGAGTTCACATGCAGGCACCTCCTCTGGCCATGCACCTCCTATCACGATCAAAACTGAGGTACCCAACGTCTCTCATCCCCACTTCTCCCAGCCATCTACTTCCTCGTTCATTCTTGGATCTAGGGTTTCCATTGAAACGGTTATTCTAGATTCAAATTTTAATTCCTCGGATGAGGACGATTATGTTGTTCTCTCTAAGTTGCTTAGTCGTTTCAAAAAGAGGGATCAGTCTGGTCAGTCATCGACTCTTGCCTCTGCCCCTCAGGTTATGAGATCATCAACTCGTGTATCTCCTCCCTCTCCGATTTTGCATTCTTTTCCACCATCTCGGGTGATTCCAGATATCCCCACTCGCACTGCAGATTGA

Coding sequence (CDS)

ATGGAGTTGGTAAAGAATCAGTTAAGATTTTCTTTTAAGAATGGTCCTGTTCAGAGTTCACATGCAGGCACCTCCTCTGGCCATGCACCTCCTATCACGATCAAAACTGAGGTACCCAACGTCTCTCATCCCCACTTCTCCCAGCCATCTACTTCCTCGTTCATTCTTGGATCTAGGGTTTCCATTGAAACGGTTATTCTAGATTCAAATTTTAATTCCTCGGATGAGGACGATTATGTTGTTCTCTCTAAGTTGCTTAGTCGTTTCAAAAAGAGGGATCAGTCTGGTCAGTCATCGACTCTTGCCTCTGCCCCTCAGGTTATGAGATCATCAACTCGTGTATCTCCTCCCTCTCCGATTTTGCATTCTTTTCCACCATCTCGGGTGATTCCAGATATCCCCACTCGCACTGCAGATTGA

Protein sequence

MELVKNQLRFSFKNGPVQSSHAGTSSGHAPPITIKTEVPNVSHPHFSQPSTSSFILGSRVSIETVILDSNFNSSDEDDYVVLSKLLSRFKKRDQSGQSSTLASAPQVMRSSTRVSPPSPILHSFPPSRVIPDIPTRTAD

Homology

[Close]

BLAST of MELO3C024888 vs. NCBI nr
Match: KAA0048179.1 (envelope-like [Cucumis melo var. makuwa] >TYK08079.1 envelope-like [Cucumis melo var. makuwa])

HSP 1 Score: 256.5 bits (654), Expect = 1.3e-64
Identity = 134/139 (96.40%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MELVKNQLRFSFKNGPVQSSHAGTSSGHAPPITIKTEVPNVSHPHFSQPSTSSFILGSRV 60
           MELVKNQLRFSFKNGPVQSSHAGTSSGHAPPITIKTEVPNV HPHFSQPSTSSFILGSRV
Sbjct: 1   MELVKNQLRFSFKNGPVQSSHAGTSSGHAPPITIKTEVPNVYHPHFSQPSTSSFILGSRV 60

Query: 61  SIETVILDSNFNSSDEDDYVVLSKLLSRFKKRDQSGQSSTLASAPQVMRSSTRVSPPSPI 120
           SIETVILDSNFNSSDEDDYVVLSKLLSRFKK DQSGQSST AS PQVMRSSTRVSPP PI
Sbjct: 61  SIETVILDSNFNSSDEDDYVVLSKLLSRFKKGDQSGQSSTPASTPQVMRSSTRVSPPYPI 120

Query: 121 LHSFPPSRVIPDIPTRTAD 140
           LHSFPPSRVIPDIPTRTAD
Sbjct: 121 LHSFPPSRVIPDIPTRTAD 139

[Close]

BLAST of MELO3C024888 vs. NCBI nr
Match: KAA0049940.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK07672.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 4.5e-17
Identity = 59/102 (57.84%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 21  HAGTSSGHAPPITIKTEVPNVSHPHFSQPSTSSFILGSRVSIETVILDSNFNSSDEDDYV 80
           +  TS   AP +TIK EVPNVS P F+QPS SS I GS++ IETVILDSN +SSD DD V
Sbjct: 45  YKSTSFSRAPLVTIKIEVPNVSPPRFTQPSASSSISGSKIFIETVILDSNSDSSDGDDSV 104

Query: 81  VLSKLLSRFKKRDQSGQSSTLASAPQVMRSSTRVSPPSPILH 123
           VL KLLSRFK  D  G+SST A   Q + S TR + P  + H
Sbjct: 105 VLWKLLSRFKIGDWFGESSTPAPTAQGISSPTRAASPLNVTH 146

[Close]

BLAST of MELO3C024888 vs. NCBI nr
Match: KAA0056471.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK29056.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 4.5e-17
Identity = 65/122 (53.28%), Postives = 78/122 (63.93%), Query Frame = 0


Query: 17  VQSSHAGTSSGHAPPITIKTEVPNVSHPHFSQPSTSSFILGSRVSIETVILDSNFNSSDE 76
           VQS+HA TSS HAP + +K +VP+ S P F+QPS SS I  SRVSIETVILD +  SS+ 
Sbjct: 76  VQSAHASTSSSHAPSVIVKIKVPDGSPPRFTQPSASSSISRSRVSIETVILDLDSASSNS 135

Query: 77  DDYVVLSKLLSRFKKRDQSGQSSTLASAPQVMRSSTRVSPPSPILHSFPPSRVIPDIPTR 136
           D+ +VLSKLL R K  D+SG  STLA   Q  R     SPP  +    PP R   D+P R
Sbjct: 136 DESIVLSKLLRRLKTMDRSGPLSTLAPTAQGTR-----SPPCDV---SPPPR---DVPPR 186

Query: 137 TA 139
           TA
Sbjct: 196 TA 186

[Close]

BLAST of MELO3C024888 vs. NCBI nr
Match: KAA0036115.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK27604.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-16
Identity = 56/88 (63.64%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 16  PVQSSHAGTSSGHAPPITIKTEVPNVSHPHFSQPSTSSFILGSRVSIETVILDSNFNSSD 75
           P+Q++HAGTS GHAP I +KTEVP+VS P  + P TSS I GSRV+IETVILDSN  SS+
Sbjct: 74  PIQNAHAGTSFGHAPSIIVKTEVPDVSPPRATLPYTSSSISGSRVAIETVILDSNSASSN 133

Query: 76  EDDYVVLSKLLSRFKKRDQSGQSSTLAS 104
            DD V+LSKLL RFK  D  G SS  A+
Sbjct: 134 GDDSVILSKLLHRFKIGD-IGPSSISAN 160

[Close]

BLAST of MELO3C024888 vs. NCBI nr
Match: KAA0044266.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-14
Identity = 61/135 (45.19%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 6   NQLRFSFKNGPVQSSHAGTSSGHAPPITIKTEVPNVSHPHFSQPSTSSFILGSRVSIETV 65
           + ++ S    P +S+HAG +S HA   TI  EVP +S P FSQPS SSF+  S +SIETV
Sbjct: 33  DDIKDSASTNPTRSTHAGMASRHATLATINIEVPTISLPRFSQPSVSSFVPDSMISIETV 92

Query: 66  ILDSNFNSSDEDDYVVLSKLLSRFKKRDQSGQSSTLASAPQVMRSSTRVSPP------SP 125
           ILDS  +  D DD VVLSKLL+ FK+ D SG S        +  SST+  PP      +P
Sbjct: 93  ILDSELDPFDGDDSVVLSKLLNWFKRVDPSGHSF-------IPSSSTKGVPPPASISINP 152

Query: 126 ILHSFPPS-RVIPDI 134
           I+ +   S RV P +
Sbjct: 153 IIQTTVASPRVAPSV 160

[Close]

BLAST of MELO3C024888 vs. ExPASy TrEMBL
Match: A0A5A7U407 (Envelope-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002370 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.3e-65
Identity = 134/139 (96.40%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MELVKNQLRFSFKNGPVQSSHAGTSSGHAPPITIKTEVPNVSHPHFSQPSTSSFILGSRV 60
           MELVKNQLRFSFKNGPVQSSHAGTSSGHAPPITIKTEVPNV HPHFSQPSTSSFILGSRV
Sbjct: 1   MELVKNQLRFSFKNGPVQSSHAGTSSGHAPPITIKTEVPNVYHPHFSQPSTSSFILGSRV 60

Query: 61  SIETVILDSNFNSSDEDDYVVLSKLLSRFKKRDQSGQSSTLASAPQVMRSSTRVSPPSPI 120
           SIETVILDSNFNSSDEDDYVVLSKLLSRFKK DQSGQSST AS PQVMRSSTRVSPP PI
Sbjct: 61  SIETVILDSNFNSSDEDDYVVLSKLLSRFKKGDQSGQSSTPASTPQVMRSSTRVSPPYPI 120

Query: 121 LHSFPPSRVIPDIPTRTAD 140
           LHSFPPSRVIPDIPTRTAD
Sbjct: 121 LHSFPPSRVIPDIPTRTAD 139

[Close]

BLAST of MELO3C024888 vs. ExPASy TrEMBL
Match: A0A5A7U3T5 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00810 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.2e-17
Identity = 59/102 (57.84%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 21  HAGTSSGHAPPITIKTEVPNVSHPHFSQPSTSSFILGSRVSIETVILDSNFNSSDEDDYV 80
           +  TS   AP +TIK EVPNVS P F+QPS SS I GS++ IETVILDSN +SSD DD V
Sbjct: 45  YKSTSFSRAPLVTIKIEVPNVSPPRFTQPSASSSISGSKIFIETVILDSNSDSSDGDDSV 104

Query: 81  VLSKLLSRFKKRDQSGQSSTLASAPQVMRSSTRVSPPSPILH 123
           VL KLLSRFK  D  G+SST A   Q + S TR + P  + H
Sbjct: 105 VLWKLLSRFKIGDWFGESSTPAPTAQGISSPTRAASPLNVTH 146

[Close]

BLAST of MELO3C024888 vs. ExPASy TrEMBL
Match: A0A5D3DZG0 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001740 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.2e-17
Identity = 65/122 (53.28%), Postives = 78/122 (63.93%), Query Frame = 0


Query: 17  VQSSHAGTSSGHAPPITIKTEVPNVSHPHFSQPSTSSFILGSRVSIETVILDSNFNSSDE 76
           VQS+HA TSS HAP + +K +VP+ S P F+QPS SS I  SRVSIETVILD +  SS+ 
Sbjct: 76  VQSAHASTSSSHAPSVIVKIKVPDGSPPRFTQPSASSSISRSRVSIETVILDLDSASSNS 135

Query: 77  DDYVVLSKLLSRFKKRDQSGQSSTLASAPQVMRSSTRVSPPSPILHSFPPSRVIPDIPTR 136
           D+ +VLSKLL R K  D+SG  STLA   Q  R     SPP  +    PP R   D+P R
Sbjct: 136 DESIVLSKLLRRLKTMDRSGPLSTLAPTAQGTR-----SPPCDV---SPPPR---DVPPR 186

Query: 137 TA 139
           TA
Sbjct: 196 TA 186

[Close]

BLAST of MELO3C024888 vs. ExPASy TrEMBL
Match: A0A5D3DVS7 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold86G00220 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 56/88 (63.64%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 16  PVQSSHAGTSSGHAPPITIKTEVPNVSHPHFSQPSTSSFILGSRVSIETVILDSNFNSSD 75
           P+Q++HAGTS GHAP I +KTEVP+VS P  + P TSS I GSRV+IETVILDSN  SS+
Sbjct: 74  PIQNAHAGTSFGHAPSIIVKTEVPDVSPPRATLPYTSSSISGSRVAIETVILDSNSASSN 133

Query: 76  EDDYVVLSKLLSRFKKRDQSGQSSTLAS 104
            DD V+LSKLL RFK  D  G SS  A+
Sbjct: 134 GDDSVILSKLLHRFKIGD-IGPSSISAN 160

[Close]

BLAST of MELO3C024888 vs. ExPASy TrEMBL
Match: A0A5A7TQ82 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2741G00250 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.0e-14
Identity = 61/135 (45.19%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 6   NQLRFSFKNGPVQSSHAGTSSGHAPPITIKTEVPNVSHPHFSQPSTSSFILGSRVSIETV 65
           + ++ S    P +S+HAG +S HA   TI  EVP +S P FSQPS SSF+  S +SIETV
Sbjct: 33  DDIKDSASTNPTRSTHAGMASRHATLATINIEVPTISLPRFSQPSVSSFVPDSMISIETV 92

Query: 66  ILDSNFNSSDEDDYVVLSKLLSRFKKRDQSGQSSTLASAPQVMRSSTRVSPP------SP 125
           ILDS  +  D DD VVLSKLL+ FK+ D SG S        +  SST+  PP      +P
Sbjct: 93  ILDSELDPFDGDDSVVLSKLLNWFKRVDPSGHSF-------IPSSSTKGVPPPASISINP 152

Query: 126 ILHSFPPS-RVIPDI 134
           I+ +   S RV P +
Sbjct: 153 IIQTTVASPRVAPSV 160

The following BLAST results are available for this feature:

BLAST of MELO3C024888 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048179.1	1.3e-64	96.40	envelope-like [Cucumis melo var. makuwa] >TYK08079.1 envelope-like [Cucumis melo...	[more]
KAA0049940.1	4.5e-17	57.84	flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK07672.1 flocculat...	[more]
KAA0056471.1	4.5e-17	53.28	flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK29056.1 flocculat...	[more]
KAA0036115.1	3.8e-16	63.64	flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK27604.1 flocculat...	[more]
KAA0044266.1	2.1e-14	45.19	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C024888 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C024888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U407	6.3e-65	96.40	Envelope-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002370...	[more]
A0A5A7U3T5	2.2e-17	57.84	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3DZG0	2.2e-17	53.28	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3DVS7	1.8e-16	63.64	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TQ82	1.0e-14	45.19	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of MELO3C024888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024888.1	MELO3C024888.1	mRNA