MELO3C024858 (gene) Melon (DHL92) v4

Overview
NameMELO3C024858
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr07: 16626427 .. 16627029 (+)
RNA-Seq ExpressionMELO3C024858
SyntenyMELO3C024858
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGGGCTCGTCGTGCAATGGGTTCGAATGGAATTATGAACTGAAGTGCATTATTGTGAAGAAGGATGTGTTCGAGAATTGGGTAAATGTACATTATTTCTTATGTCAACCATTATTCGTTTGTAATAAAAAAAAAATAAACTAACAATTTACTGCAACACTTGAACAGAGTCATCCTGTTGCGAACGGCCTCCTAAACAGATCGTTTCCCCATTACAACGAACTGTGCTATGTCTTTGGGAGAGATTGTGCGACAGGAGGGCGCATAGAGACATTCGTTGATGTCGAGTCGAATGTGTCTGGATGGTACGAGGGACTTGCCAGTACTGACGATGGCAACAATATTGAGATCCCTACGATGTACAGTCAGGGACTAGACATGTCGCCTAACGACATAATGGGCACACGACCCAAACGTGCAAGTGGCGATAGGAATGCTTCAAGCGAGTTAAAGAGGAAGCGAGGTGGCCAGTCGGTAGAAATTGCGAAAGTCATATGCAGTGTCATGGAATACGTCAATGACCAACTTAATCAGAATGTAGATAGGTTGATCATACAATGCCAAGATGCAAGCGCAACACGTCAAGAGGTCGTTCAATAG

mRNA sequence

ATGCGGGGCTCGTCGTGCAATGGGTTCGAATGGAATTATGAACTGAAGTGCATTATTGTGAAGAAGGATGTGTTCGAGAATTGGAGTCATCCTGTTGCGAACGGCCTCCTAAACAGATCGTTTCCCCATTACAACGAACTGTGCTATGTCTTTGGGAGAGATTGTGCGACAGGAGGGCGCATAGAGACATTCGTTGATGTCGAGTCGAATGTGTCTGGATGGTACGAGGGACTTGCCAGTACTGACGATGGCAACAATATTGAGATCCCTACGATGTACAGTCAGGGACTAGACATGTCGCCTAACGACATAATGGGCACACGACCCAAACGTGCAAGTGGCGATAGGAATGCTTCAAGCGAGTTAAAGAGGAAGCGAGGTGGCCAGTCGGTAGAAATTGCGAAAGTCATATGCAGTGTCATGGAATACGTCAATGACCAACTTAATCAGAATGTAGATAGGTTGATCATACAATGCCAAGATGCAAGCGCAACACGTCAAGAGGTCGTTCAATAG

Coding sequence (CDS)

ATGCGGGGCTCGTCGTGCAATGGGTTCGAATGGAATTATGAACTGAAGTGCATTATTGTGAAGAAGGATGTGTTCGAGAATTGGAGTCATCCTGTTGCGAACGGCCTCCTAAACAGATCGTTTCCCCATTACAACGAACTGTGCTATGTCTTTGGGAGAGATTGTGCGACAGGAGGGCGCATAGAGACATTCGTTGATGTCGAGTCGAATGTGTCTGGATGGTACGAGGGACTTGCCAGTACTGACGATGGCAACAATATTGAGATCCCTACGATGTACAGTCAGGGACTAGACATGTCGCCTAACGACATAATGGGCACACGACCCAAACGTGCAAGTGGCGATAGGAATGCTTCAAGCGAGTTAAAGAGGAAGCGAGGTGGCCAGTCGGTAGAAATTGCGAAAGTCATATGCAGTGTCATGGAATACGTCAATGACCAACTTAATCAGAATGTAGATAGGTTGATCATACAATGCCAAGATGCAAGCGCAACACGTCAAGAGGTCGTTCAATAG

Protein sequence

MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGRIETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASSELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ
Homology
BLAST of MELO3C024858 vs. NCBI nr
Match: KAA0061395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14749.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 356.3 bits (913), Expect = 1.5e-94
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
           MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR
Sbjct: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60

Query: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
           IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS
Sbjct: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120

Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
           ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ
Sbjct: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 171

BLAST of MELO3C024858 vs. NCBI nr
Match: KAA0065737.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 3.2e-41
Identity = 87/171 (50.88%), Postives = 121/171 (70.76%), Query Frame = 0

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
           MRG +C+GF WN E KCI+ +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 79  MRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 138

Query: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
            E+F D+ SN    Y+  A+ D   + + P MYS GL+MSP+D+M TR  R S  RN SS
Sbjct: 139 AESFADIGSNDPPGYDAFAA-DAVPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 198

Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
           E KRKR G + +   ++ + +EY N+QL++  +  I+Q QDA+ TRQ++V+
Sbjct: 199 ESKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQDIVR 248

BLAST of MELO3C024858 vs. NCBI nr
Match: KAA0044843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 4.2e-41
Identity = 87/171 (50.88%), Postives = 120/171 (70.18%), Query Frame = 0

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
           M G +C+GF WN E KCII +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATG R
Sbjct: 83  MCGPNCSGFGWNDEKKCIIAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGDR 142

Query: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
            E+F D+ SN    Y+  A+ D   + + P MYS GL+MSP+D+M TR  R S  RN SS
Sbjct: 143 AESFADIGSNDPAGYDAFAA-DIVPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 202

Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
             KRKR G +++   ++ + +EY N+QL++  +  I+QCQDA+ TRQE+V+
Sbjct: 203 GSKRKRPGHAIDSGDIVRTAIEYGNEQLHRIAEWSILQCQDATQTRQEIVR 252

BLAST of MELO3C024858 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.9 bits (450), Expect = 7.2e-41
Identity = 87/171 (50.88%), Postives = 121/171 (70.76%), Query Frame = 0

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
           MRG +C+GF WN E KCI+ +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 83  MRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 142

Query: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
            E+F D+ SN    Y+ +A+ D   + + P MYS GL+MSP+D+M TR  R S  RN SS
Sbjct: 143 AESFADIGSNDPPGYDAVAA-DAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 202

Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
             KRKR G + +   ++ + +EY N+QL++  +  I+Q QDA+ TRQE+V+
Sbjct: 203 GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR 252

BLAST of MELO3C024858 vs. NCBI nr
Match: KAA0048362.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.9 bits (450), Expect = 7.2e-41
Identity = 87/171 (50.88%), Postives = 121/171 (70.76%), Query Frame = 0

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
           MRG +C+GF WN E KCI+ +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 79  MRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 138

Query: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
            E+F D+ SN    Y+ +A+ D   + + P MYS GL+MSP+D+M TR  R S  RN SS
Sbjct: 139 AESFADIGSNDPPGYDAVAA-DAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 198

Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
             KRKR G + +   ++ + +EY N+QL++  +  I+Q QDA+ TRQE+V+
Sbjct: 199 GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR 248

BLAST of MELO3C024858 vs. ExPASy TrEMBL
Match: A0A5D3CX17 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00870 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 7.1e-95
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
           MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR
Sbjct: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60

Query: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
           IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS
Sbjct: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120

Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
           ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ
Sbjct: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 171

BLAST of MELO3C024858 vs. ExPASy TrEMBL
Match: A0A5A7VF53 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00250 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.6e-41
Identity = 87/171 (50.88%), Postives = 121/171 (70.76%), Query Frame = 0

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
           MRG +C+GF WN E KCI+ +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 79  MRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 138

Query: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
            E+F D+ SN    Y+  A+ D   + + P MYS GL+MSP+D+M TR  R S  RN SS
Sbjct: 139 AESFADIGSNDPPGYDAFAA-DAVPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 198

Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
           E KRKR G + +   ++ + +EY N+QL++  +  I+Q QDA+ TRQ++V+
Sbjct: 199 ESKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQDIVR 248

BLAST of MELO3C024858 vs. ExPASy TrEMBL
Match: A0A5A7TMW5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001350 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.0e-41
Identity = 87/171 (50.88%), Postives = 120/171 (70.18%), Query Frame = 0

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
           M G +C+GF WN E KCII +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATG R
Sbjct: 83  MCGPNCSGFGWNDEKKCIIAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGDR 142

Query: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
            E+F D+ SN    Y+  A+ D   + + P MYS GL+MSP+D+M TR  R S  RN SS
Sbjct: 143 AESFADIGSNDPAGYDAFAA-DIVPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 202

Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
             KRKR G +++   ++ + +EY N+QL++  +  I+QCQDA+ TRQE+V+
Sbjct: 203 GSKRKRPGHAIDSGDIVRTAIEYGNEQLHRIAEWSILQCQDATQTRQEIVR 252

BLAST of MELO3C024858 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 3.5e-41
Identity = 87/171 (50.88%), Postives = 121/171 (70.76%), Query Frame = 0

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
           MRG +C+GF WN E KCI+ +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 83  MRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 142

Query: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
            E+F D+ SN    Y+ +A+ D   + + P MYS GL+MSP+D+M TR  R S  RN SS
Sbjct: 143 AESFADIGSNDPPGYDAVAA-DAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 202

Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
             KRKR G + +   ++ + +EY N+QL++  +  I+Q QDA+ TRQE+V+
Sbjct: 203 GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR 252

BLAST of MELO3C024858 vs. ExPASy TrEMBL
Match: A0A5A7TXU5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00810 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 3.5e-41
Identity = 87/171 (50.88%), Postives = 121/171 (70.76%), Query Frame = 0

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
           MRG +C+GF WN E KCI+ +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 79  MRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 138

Query: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
            E+F D+ SN    Y+ +A+ D   + + P MYS GL+MSP+D+M TR  R S  RN SS
Sbjct: 139 AESFADIGSNDPPGYDAVAA-DAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 198

Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
             KRKR G + +   ++ + +EY N+QL++  +  I+Q QDA+ TRQE+V+
Sbjct: 199 GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR 248

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0061395.11.5e-94100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK14749.1 retrotransposon p... [more]
KAA0065737.13.2e-4150.88retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0044843.14.2e-4150.88retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035621.17.2e-4150.88retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon... [more]
KAA0048362.17.2e-4150.88retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CX177.1e-95100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VF531.6e-4150.88Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TMW52.0e-4150.88Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DPR53.5e-4150.88Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TXU53.5e-4150.88Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 145..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..126
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..156

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024858.1MELO3C024858.1mRNA