Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGGGCTCGTCGTGCAATGGGTTCGAATGGAATTATGAACTGAAGTGCATTATTGTGAAGAAGGATGTGTTCGAGAATTGGGTAAATGTACATTATTTCTTATGTCAACCATTATTCGTTTGTAATAAAAAAAAAATAAACTAACAATTTACTGCAACACTTGAACAGAGTCATCCTGTTGCGAACGGCCTCCTAAACAGATCGTTTCCCCATTACAACGAACTGTGCTATGTCTTTGGGAGAGATTGTGCGACAGGAGGGCGCATAGAGACATTCGTTGATGTCGAGTCGAATGTGTCTGGATGGTACGAGGGACTTGCCAGTACTGACGATGGCAACAATATTGAGATCCCTACGATGTACAGTCAGGGACTAGACATGTCGCCTAACGACATAATGGGCACACGACCCAAACGTGCAAGTGGCGATAGGAATGCTTCAAGCGAGTTAAAGAGGAAGCGAGGTGGCCAGTCGGTAGAAATTGCGAAAGTCATATGCAGTGTCATGGAATACGTCAATGACCAACTTAATCAGAATGTAGATAGGTTGATCATACAATGCCAAGATGCAAGCGCAACACGTCAAGAGGTCGTTCAATAG
mRNA sequence
ATGCGGGGCTCGTCGTGCAATGGGTTCGAATGGAATTATGAACTGAAGTGCATTATTGTGAAGAAGGATGTGTTCGAGAATTGGAGTCATCCTGTTGCGAACGGCCTCCTAAACAGATCGTTTCCCCATTACAACGAACTGTGCTATGTCTTTGGGAGAGATTGTGCGACAGGAGGGCGCATAGAGACATTCGTTGATGTCGAGTCGAATGTGTCTGGATGGTACGAGGGACTTGCCAGTACTGACGATGGCAACAATATTGAGATCCCTACGATGTACAGTCAGGGACTAGACATGTCGCCTAACGACATAATGGGCACACGACCCAAACGTGCAAGTGGCGATAGGAATGCTTCAAGCGAGTTAAAGAGGAAGCGAGGTGGCCAGTCGGTAGAAATTGCGAAAGTCATATGCAGTGTCATGGAATACGTCAATGACCAACTTAATCAGAATGTAGATAGGTTGATCATACAATGCCAAGATGCAAGCGCAACACGTCAAGAGGTCGTTCAATAG
Coding sequence (CDS)
ATGCGGGGCTCGTCGTGCAATGGGTTCGAATGGAATTATGAACTGAAGTGCATTATTGTGAAGAAGGATGTGTTCGAGAATTGGAGTCATCCTGTTGCGAACGGCCTCCTAAACAGATCGTTTCCCCATTACAACGAACTGTGCTATGTCTTTGGGAGAGATTGTGCGACAGGAGGGCGCATAGAGACATTCGTTGATGTCGAGTCGAATGTGTCTGGATGGTACGAGGGACTTGCCAGTACTGACGATGGCAACAATATTGAGATCCCTACGATGTACAGTCAGGGACTAGACATGTCGCCTAACGACATAATGGGCACACGACCCAAACGTGCAAGTGGCGATAGGAATGCTTCAAGCGAGTTAAAGAGGAAGCGAGGTGGCCAGTCGGTAGAAATTGCGAAAGTCATATGCAGTGTCATGGAATACGTCAATGACCAACTTAATCAGAATGTAGATAGGTTGATCATACAATGCCAAGATGCAAGCGCAACACGTCAAGAGGTCGTTCAATAG
Protein sequence
MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGRIETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASSELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ
Homology
BLAST of MELO3C024858 vs. NCBI nr
Match:
KAA0061395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14749.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 356.3 bits (913), Expect = 1.5e-94
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0
Query: 1 MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR
Sbjct: 1 MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
Query: 61 IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS
Sbjct: 61 IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ
Sbjct: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 171
BLAST of MELO3C024858 vs. NCBI nr
Match:
KAA0065737.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 179.1 bits (453), Expect = 3.2e-41
Identity = 87/171 (50.88%), Postives = 121/171 (70.76%), Query Frame = 0
Query: 1 MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
MRG +C+GF WN E KCI+ +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 79 MRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 138
Query: 61 IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
E+F D+ SN Y+ A+ D + + P MYS GL+MSP+D+M TR R S RN SS
Sbjct: 139 AESFADIGSNDPPGYDAFAA-DAVPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 198
Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
E KRKR G + + ++ + +EY N+QL++ + I+Q QDA+ TRQ++V+
Sbjct: 199 ESKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQDIVR 248
BLAST of MELO3C024858 vs. NCBI nr
Match:
KAA0044843.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 178.7 bits (452), Expect = 4.2e-41
Identity = 87/171 (50.88%), Postives = 120/171 (70.18%), Query Frame = 0
Query: 1 MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
M G +C+GF WN E KCII +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATG R
Sbjct: 83 MCGPNCSGFGWNDEKKCIIAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGDR 142
Query: 61 IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
E+F D+ SN Y+ A+ D + + P MYS GL+MSP+D+M TR R S RN SS
Sbjct: 143 AESFADIGSNDPAGYDAFAA-DIVPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 202
Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
KRKR G +++ ++ + +EY N+QL++ + I+QCQDA+ TRQE+V+
Sbjct: 203 GSKRKRPGHAIDSGDIVRTAIEYGNEQLHRIAEWSILQCQDATQTRQEIVR 252
BLAST of MELO3C024858 vs. NCBI nr
Match:
KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 177.9 bits (450), Expect = 7.2e-41
Identity = 87/171 (50.88%), Postives = 121/171 (70.76%), Query Frame = 0
Query: 1 MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
MRG +C+GF WN E KCI+ +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 83 MRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 142
Query: 61 IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
E+F D+ SN Y+ +A+ D + + P MYS GL+MSP+D+M TR R S RN SS
Sbjct: 143 AESFADIGSNDPPGYDAVAA-DAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 202
Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
KRKR G + + ++ + +EY N+QL++ + I+Q QDA+ TRQE+V+
Sbjct: 203 GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR 252
BLAST of MELO3C024858 vs. NCBI nr
Match:
KAA0048362.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 177.9 bits (450), Expect = 7.2e-41
Identity = 87/171 (50.88%), Postives = 121/171 (70.76%), Query Frame = 0
Query: 1 MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
MRG +C+GF WN E KCI+ +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 79 MRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 138
Query: 61 IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
E+F D+ SN Y+ +A+ D + + P MYS GL+MSP+D+M TR R S RN SS
Sbjct: 139 AESFADIGSNDPPGYDAVAA-DAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 198
Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
KRKR G + + ++ + +EY N+QL++ + I+Q QDA+ TRQE+V+
Sbjct: 199 GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR 248
BLAST of MELO3C024858 vs. ExPASy TrEMBL
Match:
A0A5D3CX17 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00870 PE=4 SV=1)
HSP 1 Score: 356.3 bits (913), Expect = 7.1e-95
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0
Query: 1 MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR
Sbjct: 1 MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
Query: 61 IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS
Sbjct: 61 IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ
Sbjct: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 171
BLAST of MELO3C024858 vs. ExPASy TrEMBL
Match:
A0A5A7VF53 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00250 PE=4 SV=1)
HSP 1 Score: 179.1 bits (453), Expect = 1.6e-41
Identity = 87/171 (50.88%), Postives = 121/171 (70.76%), Query Frame = 0
Query: 1 MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
MRG +C+GF WN E KCI+ +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 79 MRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 138
Query: 61 IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
E+F D+ SN Y+ A+ D + + P MYS GL+MSP+D+M TR R S RN SS
Sbjct: 139 AESFADIGSNDPPGYDAFAA-DAVPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 198
Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
E KRKR G + + ++ + +EY N+QL++ + I+Q QDA+ TRQ++V+
Sbjct: 199 ESKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQDIVR 248
BLAST of MELO3C024858 vs. ExPASy TrEMBL
Match:
A0A5A7TMW5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001350 PE=4 SV=1)
HSP 1 Score: 178.7 bits (452), Expect = 2.0e-41
Identity = 87/171 (50.88%), Postives = 120/171 (70.18%), Query Frame = 0
Query: 1 MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
M G +C+GF WN E KCII +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATG R
Sbjct: 83 MCGPNCSGFGWNDEKKCIIAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGDR 142
Query: 61 IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
E+F D+ SN Y+ A+ D + + P MYS GL+MSP+D+M TR R S RN SS
Sbjct: 143 AESFADIGSNDPAGYDAFAA-DIVPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 202
Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
KRKR G +++ ++ + +EY N+QL++ + I+QCQDA+ TRQE+V+
Sbjct: 203 GSKRKRPGHAIDSGDIVRTAIEYGNEQLHRIAEWSILQCQDATQTRQEIVR 252
BLAST of MELO3C024858 vs. ExPASy TrEMBL
Match:
A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)
HSP 1 Score: 177.9 bits (450), Expect = 3.5e-41
Identity = 87/171 (50.88%), Postives = 121/171 (70.76%), Query Frame = 0
Query: 1 MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
MRG +C+GF WN E KCI+ +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 83 MRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 142
Query: 61 IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
E+F D+ SN Y+ +A+ D + + P MYS GL+MSP+D+M TR R S RN SS
Sbjct: 143 AESFADIGSNDPPGYDAVAA-DAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 202
Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
KRKR G + + ++ + +EY N+QL++ + I+Q QDA+ TRQE+V+
Sbjct: 203 GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR 252
BLAST of MELO3C024858 vs. ExPASy TrEMBL
Match:
A0A5A7TXU5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00810 PE=4 SV=1)
HSP 1 Score: 177.9 bits (450), Expect = 3.5e-41
Identity = 87/171 (50.88%), Postives = 121/171 (70.76%), Query Frame = 0
Query: 1 MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
MRG +C+GF WN E KCI+ +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 79 MRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 138
Query: 61 IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
E+F D+ SN Y+ +A+ D + + P MYS GL+MSP+D+M TR R S RN SS
Sbjct: 139 AESFADIGSNDPPGYDAVAA-DAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 198
Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
KRKR G + + ++ + +EY N+QL++ + I+Q QDA+ TRQE+V+
Sbjct: 199 GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR 248
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0061395.1 | 1.5e-94 | 100.00 | retrotransposon protein [Cucumis melo var. makuwa] >TYK14749.1 retrotransposon p... | [more] |
KAA0065737.1 | 3.2e-41 | 50.88 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0044843.1 | 4.2e-41 | 50.88 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0035621.1 | 7.2e-41 | 50.88 | retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon... | [more] |
KAA0048362.1 | 7.2e-41 | 50.88 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3CX17 | 7.1e-95 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VF53 | 1.6e-41 | 50.88 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7TMW5 | 2.0e-41 | 50.88 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3DPR5 | 3.5e-41 | 50.88 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TXU5 | 3.5e-41 | 50.88 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |