MELO3C024855.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C024855.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Cytochrome b559 subunit alpha
Location	chr07: 17216995 .. 17217246 (+)
RNA-Seq Expression	MELO3C024855.jh1
Synteny	MELO3C024855.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGAAGCACAGGAGAACATTCTTTTGTTGATATTATCACCAGTATTCGATATTGGGTCATTCATAGCATTACTATACCTTCTCCATTCATTGCAGGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTATACAGAGAGTCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGGTCTTTTTAG

mRNA sequence

ATGTCTGGAAGCACAGGAGAACATTCTTTTGTTGATATTATCACCAGTATTCGATATTGGGTCATTCATAGCATTACTATACCTTCTCCATTCATTGCAGGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTATACAGAGAGTCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGGTCTTTTTAG

Coding sequence (CDS)

ATGTCTGGAAGCACAGGAGAACATTCTTTTGTTGATATTATCACCAGTATTCGATATTGGGTCATTCATAGCATTACTATACCTTCTCCATTCATTGCAGGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTATACAGAGAGTCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGGTCTTTTTAG

Protein sequence

MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESRQGIPLITGRFDSLEQLDEFSRSF

Homology

[Close]

BLAST of MELO3C024855.jh1 vs. NCBI nr
Match: YP_009057168.1 (photosystem II cytochrome b559 alpha subunit [Allium cepa] >YP_009317134.1 PsbE [Allium sativum] >YP_009469618.1 photosystem II cytochrome b559 alpha subunit [Allium obliquum] >YP_009471461.1 PsbE [Allium victorialis] >YP_009475610.1 photosystem II cytochrome b559 alpha subunit [Allium prattii] >YP_009549722.1 photosystem II cytochrome b559 alpha subunit [Allium fistulosum] >YP_009558714.1 photosystem II cytochrome b559 alpha subunit [Allium altaicum] >YP_009627493.1 photosystem II cytochrome b559 alpha subunit [Allium chrysanthum] >YP_009627579.1 photosystem II cytochrome b559 alpha subunit [Allium chrysocephalum] >YP_009627665.1 photosystem II cytochrome b559 alpha subunit [Allium herderianum] >YP_009627751.1 photosystem II cytochrome b559 alpha subunit [Allium maowenense] >YP_009627837.1 photosystem II cytochrome b559 alpha subunit [Allium rude] >YP_009627923.1 photosystem II cytochrome b559 alpha subunit [Allium xichuanense] >YP_009651219.1 photosystem II cytochrome b559 alpha subunit [Allium monanthum] >YP_009676529.1 photosystem II protein V [Allium chinense] >YP_009684710.1 photosystem II cytochrome b559 alpha subunit [Allium pskemense] >YP_009684796.1 photosystem II cytochrome b559 alpha subunit [Allium praemixtum] >YP_009686681.1 photosystem II cytochrome b559 alpha subunit [Allium oschaninii] >YP_009689782.1 photosystem II cytochrome b559 alpha subunit [Allium ampeloprasum] >YP_009692176.1 photosystem II cytochrome b559 alpha subunit [Allium tuberosum] >YP_009724881.1 photosystem II cytochrome b559 alpha subunit [Allium nanodes] >YP_009725666.1 photosystem II cytochrome b559 alpha subunit [Allium cyathophorum var. farreri] >YP_009725752.1 photosystem II cytochrome b559 alpha subunit [Allium trifurcatum] >YP_009729101.1 photosystem II cytochrome b559 alpha subunit [Allium spicatum] >YP_009729187.1 photosystem II cytochrome b559 alpha subunit [Allium cyathophorum] >YP_009729273.1 photosystem II cytochrome b559 alpha subunit [Allium mairei] >YP_009731594.1 photosystem II cytochrome b559 alpha subunit [Allium kingdonii] >YP_009868951.1 photosystem II cytochrome b559 alpha subunit [Allium caeruleum] >YP_009869123.1 photosystem II cytochrome b559 alpha subunit [Allium forrestii] >YP_009869209.1 photosystem II cytochrome b559 alpha subunit [Allium macranthum] >YP_009869295.1 photosystem II cytochrome b559 alpha subunit [Allium neriniflorum] >YP_009869381.1 photosystem II cytochrome b559 alpha subunit [Allium polyrhizum] >YP_009869467.1 photosystem II cytochrome b559 alpha subunit [Allium schoenoprasoides] >YP_009869553.1 photosystem II cytochrome b559 alpha subunit [Allium strictum] >YP_009942665.1 photosystem II cytochrome b559 alpha subunit [Allium galanthum] >AXT17931.1 cytochrome b559 subunit alpha [Allium ursinum] >QAX27751.1 photosystem II cytochrome b559 alpha subunit [Allium ramosum] >QGR23170.1 photosystem II cytochrome b559 alpha subunit [Allium ovalifolium var. leuconeurum] >QGR23339.1 photosystem II cytochrome b559 alpha subunit [Allium ovalifolium] >QGY74513.1 photosystem II cytochrome b559 alpha subunit [Allium delicatulum] >QGY74597.1 photosystem II cytochrome b559 alpha subunit [Allium pallasii] >QGY74762.1 photosystem II cytochrome b559 alpha subunit [Allium songpanicum] >QGY74847.1 photosystem II cytochrome b559 alpha subunit [Allium tanguticum] >QGY74931.1 photosystem II cytochrome b559 alpha subunit [Allium teretifolium] >QGY75015.1 photosystem II cytochrome b559 alpha subunit [Allium macrostemon] >QRZ01280.1 cytochrome b559 alpha subunit [Allium nerinifolium] >QRZ01362.1 cytochrome b559 alpha subunit [Allium schoenoprasum] >QRZ01781.1 cytochrome b559 alpha subunit [Allium koreanum] >QRZ01864.1 cytochrome b559 alpha subunit [Allium senescens] >QRZ01951.1 cytochrome b559 alpha subunit [Allium ochotense] >QRZ02281.1 cytochrome b559 alpha subunit [Allium tricoccum] >QRZ02364.1 cytochrome b559 alpha subunit [Allium siculum] >QRZ02449.1 cytochrome b559 alpha subunit [Allium nigrum] >QSL98625.1 PsbE [Allium ferganicum] >QUV75750.1 photosystem II cytochrome b559 alpha subunit [Allium changduense] >QUV75836.1 photosystem II cytochrome b559 alpha subunit [Allium cyaneum] >QUV76008.1 photosystem II cytochrome b559 alpha subunit [Allium paepalanthoides] >QUV76094.1 photosystem II cytochrome b559 alpha subunit [Allium plurifoliatum] >QUV76180.1 photosystem II cytochrome b559 alpha subunit [Allium sikkimense] >QVV24474.1 photosystem II cytochrome b559 alpha subunit [Allium tenuissimum] >QXX99847.1 cytochrome b559 subunit alpha [Allium moly] >QXY00020.1 cytochrome b559 subunit alpha [Allium semenovii] >QXY00107.1 cytochrome b559 subunit alpha [Allium zebdanense] >QYH50631.1 photosystem II cytochrome b559 alpha subunit [Allium hookeri])

HSP 1 Score: 164 bits (415), Expect = 6.52e-51
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SFVDIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFVDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 83
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C024855.jh1 vs. NCBI nr
Match: QEV84727.1 (photosystem II cytochrome b559 alpha subunit [Hexalectris grandiflora] >QRZ01031.1 cytochrome b559 alpha subunit [Allium cernuum] >QYC94786.1 photosystem II cytochrome b559 alpha subunit [Allium mongolicum])

HSP 1 Score: 163 bits (412), Expect = 1.87e-50
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SFVDIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFVDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 83
          QGIPLITGRFDSLEQLDEFS+SF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSKSF 83

[Close]

BLAST of MELO3C024855.jh1 vs. NCBI nr
Match: YP_009725837.1 (PsbE [Allium fasciculatum] >YP_009973761.1 photosystem II cytochrome b559 alpha subunit [Ruppia brevipedunculata] >QHB79465.1 photosystem II cytochrome b559 alpha subunit [Ruppia sinensis] >QHQ73034.1 PsbE [Allium fasciculatum] >QNH93568.1 photosystem II cytochrome b559 alpha subunit [Ruppia brevipedunculata])

HSP 1 Score: 163 bits (412), Expect = 1.87e-50
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SFVDIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFVDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 83
          QGIPLITGRFDSLEQLDEF+RSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFNRSF 83

[Close]

BLAST of MELO3C024855.jh1 vs. NCBI nr
Match: YP_001595525.1 (PSII reaction center subunit V [Lemna minor] >YP_009869037.1 photosystem II cytochrome b559 alpha subunit [Allium fetisowii] >ABD48512.1 PSII reaction center subunit V [Lemna minor] >QKJ80541.1 photosystem II cytochrome b559 alpha subunit [Allium fetisowii] >QRZ01199.1 cytochrome b559 alpha subunit [Allium karataviense])

HSP 1 Score: 163 bits (412), Expect = 1.87e-50
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SFVDIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TE+R
Sbjct: 1  MSGSTGERSFVDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTENR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 83
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C024855.jh1 vs. NCBI nr
Match: YP_009449807.1 (photosystem II protein V [Tacca leontopetaloides] >ANA91335.1 photosystem II protein V [Tacca leontopetaloides] >ANP26122.1 photosystem II cytochrome b559 alpha subunit [Tacca chantrieri])

HSP 1 Score: 162 bits (411), Expect = 2.66e-50
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFTDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 83
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C024855.jh1 vs. ExPASy Swiss-Prot
Match: Q70XY9 (Cytochrome b559 subunit alpha OS=Amborella trichopoda OX=13333 GN=psbE PE=3 SV=3)

HSP 1 Score: 164.9 bits (416), Expect = 4.0e-40
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C024855.jh1 vs. ExPASy Swiss-Prot
Match: P56779 (Cytochrome b559 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=psbE PE=1 SV=4)

HSP 1 Score: 164.9 bits (416), Expect = 4.0e-40
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C024855.jh1 vs. ExPASy Swiss-Prot
Match: P59702 (Cytochrome b559 subunit alpha OS=Atropa belladonna OX=33113 GN=psbE PE=3 SV=3)

HSP 1 Score: 164.9 bits (416), Expect = 4.0e-40
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C024855.jh1 vs. ExPASy Swiss-Prot
Match: P69382 (Cytochrome b559 subunit alpha OS=Beta vulgaris OX=161934 GN=psbE PE=3 SV=2)

HSP 1 Score: 164.9 bits (416), Expect = 4.0e-40
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C024855.jh1 vs. ExPASy Swiss-Prot
Match: Q4VZH5 (Cytochrome b559 subunit alpha OS=Cucumis sativus OX=3659 GN=psbE PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.0e-40
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C024855.jh1 vs. ExPASy TrEMBL
Match: A0A650CZ32 (Cytochrome b559 subunit alpha OS=Allium cyathophorum OX=105302 GN=psbE PE=3 SV=1)

HSP 1 Score: 164 bits (415), Expect = 3.16e-51
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SFVDIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFVDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 83
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C024855.jh1 vs. ExPASy TrEMBL
Match: H2FA99 (Cytochrome b559 subunit alpha OS=Allium fistulosum OX=35875 GN=psbE PE=3 SV=1)

HSP 1 Score: 164 bits (415), Expect = 3.16e-51
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SFVDIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFVDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 83
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C024855.jh1 vs. ExPASy TrEMBL
Match: H2FAA0 (Cytochrome b559 subunit alpha OS=Allium cepa OX=4679 GN=psbE PE=3 SV=1)

HSP 1 Score: 164 bits (415), Expect = 3.16e-51
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SFVDIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFVDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 83
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C024855.jh1 vs. ExPASy TrEMBL
Match: A0A1D8RD36 (Cytochrome b559 subunit alpha OS=Allium sativum OX=4682 GN=psbE PE=3 SV=1)

HSP 1 Score: 164 bits (415), Expect = 3.16e-51
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SFVDIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFVDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 83
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C024855.jh1 vs. ExPASy TrEMBL
Match: A0A3P8MMX8 (Cytochrome b559 subunit alpha OS=Allium victorialis OX=88845 GN=psbE PE=3 SV=1)

HSP 1 Score: 164 bits (415), Expect = 3.16e-51
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SFVDIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFVDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 83
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

[Close]

BLAST of MELO3C024855.jh1 vs. TAIR 10
Match: ATCG00580.1 (photosystem II reaction center protein E )

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-40
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFD LEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDPLEQLDEFSRSF 83

The following BLAST results are available for this feature:

BLAST of MELO3C024855.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009057168.1	6.52e-51	96.39	photosystem II cytochrome b559 alpha subunit [Allium cepa] >YP_009317134.1 PsbE ...	[more]
QEV84727.1	1.87e-50	95.18	photosystem II cytochrome b559 alpha subunit [Hexalectris grandiflora] >QRZ01031...	[more]
YP_009725837.1	1.87e-50	95.18	PsbE [Allium fasciculatum] >YP_009973761.1 photosystem II cytochrome b559 alpha ...	[more]
YP_001595525.1	1.87e-50	95.18	PSII reaction center subunit V [Lemna minor] >YP_009869037.1 photosystem II cyto...	[more]
YP_009449807.1	2.66e-50	95.18	photosystem II protein V [Tacca leontopetaloides] >ANA91335.1 photosystem II pro...	[more]

BLAST of MELO3C024855.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q70XY9	4.0e-40	95.18	Cytochrome b559 subunit alpha OS=Amborella trichopoda OX=13333 GN=psbE PE=3 SV=3	[more]
P56779	4.0e-40	95.18	Cytochrome b559 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=psbE PE=1 SV=4	[more]
P59702	4.0e-40	95.18	Cytochrome b559 subunit alpha OS=Atropa belladonna OX=33113 GN=psbE PE=3 SV=3	[more]
P69382	4.0e-40	95.18	Cytochrome b559 subunit alpha OS=Beta vulgaris OX=161934 GN=psbE PE=3 SV=2	[more]
Q4VZH5	4.0e-40	95.18	Cytochrome b559 subunit alpha OS=Cucumis sativus OX=3659 GN=psbE PE=3 SV=1	[more]

BLAST of MELO3C024855.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A650CZ32	3.16e-51	96.39	Cytochrome b559 subunit alpha OS=Allium cyathophorum OX=105302 GN=psbE PE=3 SV=1	[more]
H2FA99	3.16e-51	96.39	Cytochrome b559 subunit alpha OS=Allium fistulosum OX=35875 GN=psbE PE=3 SV=1	[more]
H2FAA0	3.16e-51	96.39	Cytochrome b559 subunit alpha OS=Allium cepa OX=4679 GN=psbE PE=3 SV=1	[more]
A0A1D8RD36	3.16e-51	96.39	Cytochrome b559 subunit alpha OS=Allium sativum OX=4682 GN=psbE PE=3 SV=1	[more]
A0A3P8MMX8	3.16e-51	96.39	Cytochrome b559 subunit alpha OS=Allium victorialis OX=88845 GN=psbE PE=3 SV=1	[more]

BLAST of MELO3C024855.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00580.1	1.1e-40	93.98	photosystem II reaction center protein E	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006217	Photosystem II cytochrome b559, alpha subunit	PIRSF	PIRSF000036	Cytochrome_PsbE	coord: 1..83 e-value: 2.8E-50 score: 165.3
IPR006217	Photosystem II cytochrome b559, alpha subunit	TIGRFAM	TIGR01332	TIGR01332	coord: 2..80 e-value: 1.6E-44 score: 147.8
IPR006217	Photosystem II cytochrome b559, alpha subunit	HAMAP	MF_00642	PSII_PsbE	coord: 1..81 score: 31.031925
IPR013081	Photosystem II cytochrome b559, N-terminal	PFAM	PF00283	Cytochrom_B559	coord: 6..34 e-value: 1.6E-12 score: 46.6
IPR013082	Photosystem II cytochrome b559, alpha subunit, lumenal region	PFAM	PF00284	Cytochrom_B559a	coord: 42..79 e-value: 3.9E-21 score: 74.5
IPR037025	Photosystem II cytochrome b559, alpha subunit superfamily	GENE3D	1.20.5.860	Photosystem II cytochrome b559, alpha subunit	coord: 1..83 e-value: 1.2E-47 score: 161.6
None	No IPR available	PANTHER	PTHR33391:SF15	CYTOCHROME B559 SUBUNIT ALPHA	coord: 1..83
None	No IPR available	PANTHER	PTHR33391	CYTOCHROME B559 SUBUNIT BETA-RELATED	coord: 1..83
None	No IPR available	SUPERFAMILY	161045	Cytochrome b559 subunits	coord: 3..83
IPR006216	Photosystem II cytochrome b559, conserved site	PROSITE	PS00537	CYTOCHROME_B559	coord: 14..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024855.jh1.t1	MELO3C024855.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009539	photosystem II reaction center
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding