MELO3C024842.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C024842.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptioncGMP-specific 3',5'-cyclic phosphodiesterase
Locationchr07: 17553942 .. 17554527 (+)
RNA-Seq ExpressionMELO3C024842.jh1
SyntenyMELO3C024842.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAATGGAACGCTATATGATACCCATGGAGGTCTGAACTTCAATCTAACAGAAGATATGAATATTGAAATTAAAACACACAATTACGAGTTATCAATAAAACTTCACAACTCTACCCTTAAACTAATTAACCAACAACAATTAGGGCTGCATATATTAAATAATAACCAAACCAAGTTTAGGGAGAAGAAGATGTTGCAGGAGGAGGGGACAAAAATGGGATGGAAGGGAATGAAGTTGGAATGGTAGGGATTGATGGAAAGTTCGGAAGTGCCATTGTCGGGAGCGGTGGCAACGCTAGCCCGTTCGGAAGCGGAGGGAGATTAACCTTCGGTATTGTAGGTTGTGGTAAATTTGGAAGAGTAGGGTTTGGCAAGGCAGGGAATGGCGGTATCCCGGTTGGAATTGCTGGAAGATTTGGCACCAAGGGCGGAGTGGTTTGCAAAAGATGGCGAGCAGCTTGGCCGAAGTTGATGCTTGAGAGAGCCAAAGTAGCCATAAAGGCAATGATCAAGAACTTTGAAGAAGCCATTTTTTTCCCTTTGAGAAGATGATTTGAAGTTTTTGTTAAGATGAGAGATGAGAT

mRNA sequence

TCAAATGGAACGCTATATGATACCCATGGAGGTCTGAACTTCAATCTAACAGAAGATATGAATATTGAAATTAAAACACACAATTACGAGTTATCAATAAAACTTCACAACTCTACCCTTAAACTAATTAACCAACAACAATTAGGGCTGCATATATTAAATAATAACCAAACCAAGTTTAGGGAGAAGAAGATGTTGCAGGAGGAGGGGACAAAAATGGGATGGAAGGGAATGAAGTTGGAATGGTAGGGATTGATGGAAAGTTCGGAAGTGCCATTGTCGGGAGCGGTGGCAACGCTAGCCCGTTCGGAAGCGGAGGGAGATTAACCTTCGGTATTGTAGGTTGTGGTAAATTTGGAAGAGTAGGGTTTGGCAAGGCAGGGAATGGCGGTATCCCGGTTGGAATTGCTGGAAGATTTGGCACCAAGGGCGGAGTGGTTTGCAAAAGATGGCGAGCAGCTTGGCCGAAGTTGATGCTTGAGAGAGCCAAAGTAGCCATAAAGGCAATGATCAAGAACTTTGAAGAAGCCATTTTTTTCCCTTTGAGAAGATGATTTGAAGTTTTTGTTAAGATGAGAGATGAGAT

Coding sequence (CDS)

ATGGAAGGGAATGAAGTTGGAATGGTAGGGATTGATGGAAAGTTCGGAAGTGCCATTGTCGGGAGCGGTGGCAACGCTAGCCCGTTCGGAAGCGGAGGGAGATTAACCTTCGGTATTGTAGGTTGTGGTAAATTTGGAAGAGTAGGGTTTGGCAAGGCAGGGAATGGCGGTATCCCGGTTGGAATTGCTGGAAGATTTGGCACCAAGGGCGGAGTGGTTTGCAAAAGATGGCGAGCAGCTTGGCCGAAGTTGATGCTTGAGAGAGCCAAAGTAGCCATAAAGGCAATGATCAAGAACTTTGAAGAAGCCATTTTTTTCCCTTTGAGAAGATGA

Protein sequence

MEGNEVGMVGIDGKFGSAIVGSGGNASPFGSGGRLTFGIVGCGKFGRVGFGKAGNGGIPVGIAGRFGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFEEAIFFPLRR
Homology
BLAST of MELO3C024842.jh1 vs. NCBI nr
Match: KAG7014899.1 (hypothetical protein SDJN02_22530, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126 bits (317), Expect = 1.03e-33
Identity = 73/110 (66.36%), Postives = 81/110 (73.64%), Query Frame = 0

Query: 1   MEGNEVGMVGIDGKFGSAIVGSGGNASPFGS-GGRLTFGIVGCGKFGRVGFGKAGNGGIP 60
           MEGNE GMVGID     AIVGSGG+A+P G   G+L  G VGCG+FGR     AGNGGIP
Sbjct: 118 MEGNEAGMVGID-----AIVGSGGSAAPLGMLTGKLGKGNVGCGRFGR-----AGNGGIP 177

Query: 61  VGIAGRFGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFEEAIFFPLR 109
           VG  G+FGTK GVVCKRWRAAWP  +LERAKVA+K  IKN EEAI   L+
Sbjct: 178 VGTTGKFGTKDGVVCKRWRAAWPMSILERAKVAMKTTIKNLEEAIEMVLK 217

BLAST of MELO3C024842.jh1 vs. NCBI nr
Match: KAG6576875.1 (hypothetical protein SDJN03_24449, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126 bits (317), Expect = 3.44e-33
Identity = 73/110 (66.36%), Postives = 81/110 (73.64%), Query Frame = 0

Query: 1   MEGNEVGMVGIDGKFGSAIVGSGGNASPFGS-GGRLTFGIVGCGKFGRVGFGKAGNGGIP 60
           MEGNE GMVGID     AIVGSGG+A+P G   G+L  G VGCG+FGR     AGNGGIP
Sbjct: 118 MEGNEAGMVGID-----AIVGSGGSAAPLGMLTGKLGKGNVGCGRFGR-----AGNGGIP 177

Query: 61  VGIAGRFGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFEEAIFFPLR 109
           VG  G+FGTK GVVCKRWRAAWP  +LERAKVA+K  IKN EEAI   L+
Sbjct: 178 VGTTGKFGTKDGVVCKRWRAAWPMSILERAKVAMKTTIKNLEEAIEMVLK 217

BLAST of MELO3C024842.jh1 vs. NCBI nr
Match: XP_022984242.1 (uncharacterized protein LOC111482613 [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 2.92e-12
Identity = 47/111 (42.34%), Postives = 62/111 (55.86%), Query Frame = 0

Query: 2   EGNEVGMVGIDGKFGSAIVGSGGNASP-------FGSGGRLTFG-------IVGCGKFGR 61
           +G+ VGM G DGK GS  VG+GG A+P        GSGG ++ G       +VG G  G 
Sbjct: 28  DGSVVGMDGRDGKVGSEDVGNGGKAAPVGMFIGELGSGGSVSLGSDGVLGPVVGFGNMGN 87

Query: 62  VGFGKAGNGGIPVGIAGRFGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIK 98
            G G + +G    GI GR G++GG VC+R R A P+  LE AK  + A +K
Sbjct: 88  AGRGGSADGLGSDGIGGRVGSEGGAVCRRCRVARPRSTLENAKATMMAKVK 138

BLAST of MELO3C024842.jh1 vs. NCBI nr
Match: XP_016901486.1 (PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS33, partial [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 4.23e-12
Identity = 50/115 (43.48%), Postives = 63/115 (54.78%), Query Frame = 0

Query: 2   EGNEVGMVGIDGKFGSAIVGSGGNAS-------PFGSGGRLTFGIVGCGKFGRVGF---- 61
           +G+ VG+ G DGKFGS +VG GGNA+         GSGG ++ G  G GKFG  G     
Sbjct: 33  DGSVVGIDGRDGKFGSEVVGRGGNATLVGMFMGRLGSGGSVSLGREGSGKFGMDGILGPV 92

Query: 62  GKAGNGGIPVGIAGR-FGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFEEAI 104
           G  G GG   G+     G K G+VC+R R       LE AKV +KA +K  +EAI
Sbjct: 93  GTGGRGGTADGLGSDGIGGKFGIVCRRCREVRAASTLENAKVTMKARMKQLKEAI 147

BLAST of MELO3C024842.jh1 vs. NCBI nr
Match: TYK29414.1 (beta carbonic anhydrase 5 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 4.97e-11
Identity = 50/115 (43.48%), Postives = 63/115 (54.78%), Query Frame = 0

Query: 2   EGNEVGMVGIDGKFGSAIVGSGGNAS-------PFGSGGRLTFGIVGCGKFGRVGF---- 61
           +G+ VG+ G DGKFGS +VG GGNA+         GSGG ++ G  G GKFG  G     
Sbjct: 291 DGSVVGIDGRDGKFGSEVVGRGGNATLVGMFMGRLGSGGSVSLGREGSGKFGMDGILGPV 350

Query: 62  GKAGNGGIPVGIAGR-FGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFEEAI 104
           G  G GG   G+     G K G+VC+R R       LE AKV +KA +K  +EAI
Sbjct: 351 GTGGRGGTADGLGSDGIGGKFGIVCRRCREVRAASTLENAKVTMKARMKQLKEAI 405

BLAST of MELO3C024842.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L0M4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374620 PE=4 SV=1)

HSP 1 Score: 188 bits (477), Expect = 8.24e-60
Identity = 94/107 (87.85%), Postives = 98/107 (91.59%), Query Frame = 0

Query: 1   MEGNEVGMVGIDGKFGSAIVGSGGNASPFGSGGRLTFGIVGCGKFGRVGFGKAGNGGIPV 60
           MEGNE+GMVGIDGKFGS IVGSGGNASP GSGG+L FG VGCG FGRVGFGK GNGGI V
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNASPIGSGGKLIFGNVGCGNFGRVGFGKPGNGGIRV 60

Query: 61  GIAGRFGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFEEAIFFP 107
           GIAGRFGTKGGVVC+RWRAAWPKLMLERAKVA+KAMIKN E AIFFP
Sbjct: 61  GIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAIFFP 107

BLAST of MELO3C024842.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L399 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374640 PE=4 SV=1)

HSP 1 Score: 183 bits (465), Expect = 5.57e-58
Identity = 92/107 (85.98%), Postives = 96/107 (89.72%), Query Frame = 0

Query: 1   MEGNEVGMVGIDGKFGSAIVGSGGNASPFGSGGRLTFGIVGCGKFGRVGFGKAGNGGIPV 60
           MEGNE+GMVGI G FGS IVGSGGNASP GSGG+L FG VGCG FGRVGFGK GNGGI V
Sbjct: 1   MEGNEIGMVGIGGNFGSVIVGSGGNASPIGSGGKLIFGNVGCGNFGRVGFGKPGNGGIRV 60

Query: 61  GIAGRFGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFEEAIFFP 107
           GIAGRFGTKGGVVC+RWRAAWPKLMLERAKVA+KAMIKN E AIFFP
Sbjct: 61  GIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAIFFP 107

BLAST of MELO3C024842.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KYM4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G375140 PE=4 SV=1)

HSP 1 Score: 178 bits (452), Expect = 3.78e-56
Identity = 89/101 (88.12%), Postives = 93/101 (92.08%), Query Frame = 0

Query: 1   MEGNEVGMVGIDGKFGSAIVGSGGNASPFGSGGRLTFGIVGCGKFGRVGFGKAGNGGIPV 60
           MEGNE+GMVGIDGKFGS IVGSGGN SP  SGG+LTFG VGCGKFGRVGFGK GNGGI V
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNGSPIESGGKLTFGNVGCGKFGRVGFGKPGNGGIRV 60

Query: 61  GIAGRFGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFE 101
           GIAGRFGTKGGVVC+RWR AWPKLMLERAKVA+KAMIKNFE
Sbjct: 61  GIAGRFGTKGGVVCQRWRVAWPKLMLERAKVAVKAMIKNFE 101

BLAST of MELO3C024842.jh1 vs. ExPASy TrEMBL
Match: A0A6J1J1P5 (uncharacterized protein LOC111482613 OS=Cucurbita maxima OX=3661 GN=LOC111482613 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.41e-12
Identity = 47/111 (42.34%), Postives = 62/111 (55.86%), Query Frame = 0

Query: 2   EGNEVGMVGIDGKFGSAIVGSGGNASP-------FGSGGRLTFG-------IVGCGKFGR 61
           +G+ VGM G DGK GS  VG+GG A+P        GSGG ++ G       +VG G  G 
Sbjct: 28  DGSVVGMDGRDGKVGSEDVGNGGKAAPVGMFIGELGSGGSVSLGSDGVLGPVVGFGNMGN 87

Query: 62  VGFGKAGNGGIPVGIAGRFGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIK 98
            G G + +G    GI GR G++GG VC+R R A P+  LE AK  + A +K
Sbjct: 88  AGRGGSADGLGSDGIGGRVGSEGGAVCRRCRVARPRSTLENAKATMMAKVK 138

BLAST of MELO3C024842.jh1 vs. ExPASy TrEMBL
Match: A0A1S4DZT7 (uncharacterized PE-PGRS family protein PE_PGRS33 OS=Cucumis melo OX=3656 GN=LOC107991270 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.05e-12
Identity = 50/115 (43.48%), Postives = 63/115 (54.78%), Query Frame = 0

Query: 2   EGNEVGMVGIDGKFGSAIVGSGGNAS-------PFGSGGRLTFGIVGCGKFGRVGF---- 61
           +G+ VG+ G DGKFGS +VG GGNA+         GSGG ++ G  G GKFG  G     
Sbjct: 33  DGSVVGIDGRDGKFGSEVVGRGGNATLVGMFMGRLGSGGSVSLGREGSGKFGMDGILGPV 92

Query: 62  GKAGNGGIPVGIAGR-FGTKGGVVCKRWRAAWPKLMLERAKVAIKAMIKNFEEAI 104
           G  G GG   G+     G K G+VC+R R       LE AKV +KA +K  +EAI
Sbjct: 93  GTGGRGGTADGLGSDGIGGKFGIVCRRCREVRAASTLENAKVTMKARMKQLKEAI 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7014899.11.03e-3366.36hypothetical protein SDJN02_22530, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6576875.13.44e-3366.36hypothetical protein SDJN03_24449, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022984242.12.92e-1242.34uncharacterized protein LOC111482613 [Cucurbita maxima][more]
XP_016901486.14.23e-1243.48PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS33, partial [Cucumis me... [more]
TYK29414.14.97e-1143.48beta carbonic anhydrase 5 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L0M48.24e-6087.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374620 PE=4 SV=1[more]
A0A0A0L3995.57e-5885.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374640 PE=4 SV=1[more]
A0A0A0KYM43.78e-5688.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G375140 PE=4 SV=1[more]
A0A6J1J1P51.41e-1242.34uncharacterized protein LOC111482613 OS=Cucurbita maxima OX=3661 GN=LOC111482613... [more]
A0A1S4DZT72.05e-1243.48uncharacterized PE-PGRS family protein PE_PGRS33 OS=Cucumis melo OX=3656 GN=LOC1... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024842.jh1.t1MELO3C024842.jh1.t1mRNA