MELO3C024802 (gene) Melon (DHL92) v4

Overview


Name	MELO3C024802
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr11: 8656585 .. 8657110 (-)
RNA-Seq Expression	MELO3C024802
Synteny	MELO3C024802

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGGTTGTAGTTTGACGACGATCGTCATCGAAAGCCGAATAAAGTTGTTGAAGAAGATGTTTCAGGCCATTGCGGAGATGAGGGGCCCAGCTGGTAATGGCTTCGGCTAGAACGATGACGTCAAGTTTATCATCGCCAAGAGGGACATGTTCGATCATTGGGTCCAGGTAAGAGTATGAACATAATTATATGAATAACTGGATTTTATGGAATATTAATTGCTTTGTTATATTTTTTGTGTTTTTTCCAGACGCACCCTATAGCAAAAAGACTCCTGAATGACCCATTCCCGCATTACAACGCACTATTGTACGTGTTTAGGAAAGATCGAGCCACGGGGACCCGTGCAAAGACCTTTGCAGACATCGATTTAAACGTGCCAGCCGATAACGATAGTGTCCCCGTAGAGGATGGCATCGACATGGAGTTCCTCGCTATGTCCAGCTCGAGGATGAACTTGTCCTCAGAGGGCATGATGGGCGGTAGATCAGGCCAGTCGAGCGATGGTAGGACGGGCTCTAGCTGA

mRNA sequence

TCGGTTGTAGTTTGACGACGATCGTCATCGAAAGCCGAATAAAGTTGTTGAAGAAGATGTTTCAGGCCATTGCGGAGATGAGGGGCCCAGCTGGTAATGGCTTCGGCTAGAACGATGACGTCAAGTTTATCATCGCCAAGAGGGACATGTTCGATCATTGGGTCCAGACGCACCCTATAGCAAAAAGACTCCTGAATGACCCATTCCCGCATTACAACGCACTATTGTACGTGTTTAGGAAAGATCGAGCCACGGGGACCCGTGCAAAGACCTTTGCAGACATCGATTTAAACGTGCCAGCCGATAACGATAGTGTCCCCGTAGAGGATGGCATCGACATGGAGTTCCTCGCTATGTCCAGCTCGAGGATGAACTTGTCCTCAGAGGGCATGATGGGCGGTAGATCAGGCCAGTCGAGCGATGGTAGGACGGGCTCTAGCTGA

Coding sequence (CDS)

ATGTTCGATCATTGGGTCCAGACGCACCCTATAGCAAAAAGACTCCTGAATGACCCATTCCCGCATTACAACGCACTATTGTACGTGTTTAGGAAAGATCGAGCCACGGGGACCCGTGCAAAGACCTTTGCAGACATCGATTTAAACGTGCCAGCCGATAACGATAGTGTCCCCGTAGAGGATGGCATCGACATGGAGTTCCTCGCTATGTCCAGCTCGAGGATGAACTTGTCCTCAGAGGGCATGATGGGCGGTAGATCAGGCCAGTCGAGCGATGGTAGGACGGGCTCTAGCTGA

Protein sequence

MFDHWVQTHPIAKRLLNDPFPHYNALLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS

Homology

[Close]

BLAST of MELO3C024802 vs. NCBI nr
Match: TYJ98397.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 187.2 bits (474), Expect = 6.8e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MFDHWVQTHPIAKRLLNDPFPHYNALLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVE 60
          MFDHWVQTHPIAKRLLNDPFPHYNALLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVE
Sbjct: 1  MFDHWVQTHPIAKRLLNDPFPHYNALLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVE 60

Query: 61 DGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSD 93
          DGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSD
Sbjct: 61 DGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSD 92

[Close]

BLAST of MELO3C024802 vs. NCBI nr
Match: KAA0066443.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 3.5e-40
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1   MFDHWVQTHPIAKRLLNDPFPHYNALLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVE 60
           MFDHWV+THP+AKRL+NDPFPHYNAL YVFRKDRATGTRAKTFADID NV  DNDSVPVE
Sbjct: 198 MFDHWVRTHPVAKRLMNDPFPHYNALSYVFRKDRATGTRAKTFADIDSNVLGDNDSVPVE 257

Query: 61  DGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS 99
           DGIDMEFLAMSS RMNLS EGMMG RSGQ SDGRTGSS
Sbjct: 258 DGIDMEFLAMSSLRMNLSPEGMMGSRSGQLSDGRTGSS 295

[Close]

BLAST of MELO3C024802 vs. NCBI nr
Match: KAA0055070.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-26
Identity = 66/98 (67.35%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 1   MFDHWVQTHPIAKRLLNDPFPHYNALLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVE 60
           +FDHWV+THP AK  LN PFPHY+ L YVF K RATG  ++TFADI  NV  DN+S   E
Sbjct: 35  VFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAE 94

Query: 61  DGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS 99
           DGIDMEF AM S RMN+S E M+GGRS +SSDGRTGSS
Sbjct: 95  DGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSS 132

[Close]

BLAST of MELO3C024802 vs. NCBI nr
Match: KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 64/90 (71.11%), Postives = 72/90 (80.00%), Query Frame = 0


Query: 9  HPIAKRLLNDPFPHYNALLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFL 68
          HP AKRLLN PF HY+AL YVF KD+ATG  A+TFADID N+ A  DSVP +DGIDMEF 
Sbjct: 2  HPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFP 61

Query: 69 AMSSSRMNLSSEGMMGGRSGQSSDGRTGSS 99
           M S RMN+S + MMGGRSG+SSDGRTGSS
Sbjct: 62 VMCSPRMNMSPKDMMGGRSGRSSDGRTGSS 91

[Close]

BLAST of MELO3C024802 vs. NCBI nr
Match: KAA0038274.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 8.6e-23
Identity = 56/84 (66.67%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   MFDHWVQTHPIAKRLLNDPFPHYNALLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVE 60
           +FDHWV+THPIA+ LLN PF HY+AL YVF KDRAT  R KTFADI LNV A  DSVP E
Sbjct: 24  VFDHWVRTHPIAEGLLNKPFLHYDALSYVFEKDRATKARVKTFADISLNVSASYDSVPTE 83

Query: 61  DGIDMEFLAMSSSRMNLSSEGMMG 85
           DG+DMEF AM + R+N+S + +MG
Sbjct: 84  DGLDMEFPAMCNPRINMSPKDIMG 107

[Close]

BLAST of MELO3C024802 vs. ExPASy TrEMBL
Match: A0A5D3BGZ9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001460 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.3e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MFDHWVQTHPIAKRLLNDPFPHYNALLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVE 60
          MFDHWVQTHPIAKRLLNDPFPHYNALLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVE
Sbjct: 1  MFDHWVQTHPIAKRLLNDPFPHYNALLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVE 60

Query: 61 DGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSD 93
          DGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSD
Sbjct: 61 DGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSD 92

[Close]

BLAST of MELO3C024802 vs. ExPASy TrEMBL
Match: A0A5A7VE95 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005370 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.7e-40
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1   MFDHWVQTHPIAKRLLNDPFPHYNALLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVE 60
           MFDHWV+THP+AKRL+NDPFPHYNAL YVFRKDRATGTRAKTFADID NV  DNDSVPVE
Sbjct: 198 MFDHWVRTHPVAKRLMNDPFPHYNALSYVFRKDRATGTRAKTFADIDSNVLGDNDSVPVE 257

Query: 61  DGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS 99
           DGIDMEFLAMSS RMNLS EGMMG RSGQ SDGRTGSS
Sbjct: 258 DGIDMEFLAMSSLRMNLSPEGMMGSRSGQLSDGRTGSS 295

[Close]

BLAST of MELO3C024802 vs. ExPASy TrEMBL
Match: A0A5D3DLC6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002060 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.1e-27
Identity = 66/98 (67.35%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 1   MFDHWVQTHPIAKRLLNDPFPHYNALLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVE 60
           +FDHWV+THP AK  LN PFPHY+ L YVF K RATG  ++TFADI  NV  DN+S   E
Sbjct: 35  VFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAE 94

Query: 61  DGIDMEFLAMSSSRMNLSSEGMMGGRSGQSSDGRTGSS 99
           DGIDMEF AM S RMN+S E M+GGRS +SSDGRTGSS
Sbjct: 95  DGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSS 132

[Close]

BLAST of MELO3C024802 vs. ExPASy TrEMBL
Match: A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.8e-25
Identity = 64/90 (71.11%), Postives = 72/90 (80.00%), Query Frame = 0


Query: 9  HPIAKRLLNDPFPHYNALLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVEDGIDMEFL 68
          HP AKRLLN PF HY+AL YVF KD+ATG  A+TFADID N+ A  DSVP +DGIDMEF 
Sbjct: 2  HPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFP 61

Query: 69 AMSSSRMNLSSEGMMGGRSGQSSDGRTGSS 99
           M S RMN+S + MMGGRSG+SSDGRTGSS
Sbjct: 62 VMCSPRMNMSPKDMMGGRSGRSSDGRTGSS 91

[Close]

BLAST of MELO3C024802 vs. ExPASy TrEMBL
Match: A0A5A7T479 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001300 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.2e-23
Identity = 56/84 (66.67%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   MFDHWVQTHPIAKRLLNDPFPHYNALLYVFRKDRATGTRAKTFADIDLNVPADNDSVPVE 60
           +FDHWV+THPIA+ LLN PF HY+AL YVF KDRAT  R KTFADI LNV A  DSVP E
Sbjct: 24  VFDHWVRTHPIAEGLLNKPFLHYDALSYVFEKDRATKARVKTFADISLNVSASYDSVPTE 83

Query: 61  DGIDMEFLAMSSSRMNLSSEGMMG 85
           DG+DMEF AM + R+N+S + +MG
Sbjct: 84  DGLDMEFPAMCNPRINMSPKDIMG 107

The following BLAST results are available for this feature:

BLAST of MELO3C024802 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98397.1	6.8e-44	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066443.1	3.5e-40	88.78	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0055070.1	1.7e-26	67.35	retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon p...	[more]
KAA0048148.1	1.2e-24	71.11	retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p...	[more]
KAA0038274.1	8.6e-23	66.67	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C024802 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C024802 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BGZ9	3.3e-44	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VE95	1.7e-40	88.78	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3DLC6	8.1e-27	67.35	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TYU4	5.8e-25	71.11	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T479	4.2e-23	66.67	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C024802 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024802.1	MELO3C024802.1	mRNA