MELO3C024760 (gene) Melon (DHL92) v4

Overview


Name	MELO3C024760
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	RNA polymerase sigma factor sigA
Location	chr11: 7693779 .. 7697284 (-)
RNA-Seq Expression	MELO3C024760
Synteny	MELO3C024760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATAATGAGGAAAAAAAAGTGTAATTTACCCAAAAAGTTTTGAGACCACACAAAGGTGGGCCCAATATCTATTCCAACCAATAGCATCTCAGCTCCCCATATCTCCAATTCTCAAACATTTTCCTCTCAATTTTTTCCCATTATCTTTCATTTTTCTCCAACATTCTTGCATTACCATTTCTTTCTATTTCTTTCCATGAATTTTTTCTAATTCAACCCCACCAGAAATTTTGCATCAAATTCTCAAAAATATCCTTGATATTCATTCTATCAATCCAATAACAACAACAACTAACCATTCTGCCTTCTTCTTCCTTTGGATTCACCGTCCTCTCTCTCTCTCTCTCTCTAGAGTTTTGGAGTGAAAGACTCCACGGTCTTCCTCCCATTTCTCCTTTCAGGTACTTTTTTTTCTTCATTTCTGTTTCTGGGTTCTCCAATTTTTGCTGTTTGCATGTTCCATTCAAGTACAATTCAATCTGAAGTTCGTTCTTGTAGACTGATTTTGTTCTGTTTCCTCTTATTCTAATTCTTCTGCGTTGTTTTCGAGTTTATTTTCTTTGATTGCTTGTCAATTTCACGTGGGAATTTAATCTCCTTTCTGCTCTGTTTGATGAATTTAGGGCTGTTTGTGGTGACAATTTGAAGTCATTGATCCACTGTTGCTGGCGAAGAAAATAGAGTTTGAAGTTTGATTTGGTGTAACTGATTTTGATGATAAGAGTTTTGTGCACCAGAAGAAGAGAAGCCATATGATGGCAACAACTGCAATAATTGGGCTTGGTGCGGCTAAGAGGCTGTTGAATTCTTCATCCTATTATTCTGATTTCACAGAAAAGATTCTGTATGCTAATGACTATAGGTTGGGACAAACTCAAGTTTCCCCTACAAAGAGTGTGGTAATAGCAAAAAGTTCAGCCAACTTTTCTCCAAGCTATCCATTGTCGAATCGGCACTCTCAGCAATGCATCAAAGCTGTGAAGGAACATGTAGAAACTCCATCTTCTCCGACTGCAGAGCCATGGCTTCCTAACACCACAATCTGGGAAGATGAAGAAACTGATCTGAAATGTACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCCATGCTGGAGAAGCAATGGAATCTATCTTTTGAACAAACTGTGTCGACGGATATGCCTAGAGAAAAAACGCTGAAGAAAGTACCTGTCACTTGTTCCGGTGTGTCTGCACGGCAAAGGAGAATGAGTTCTAAGAGGAAAATACAGAGTAAACATGTTTTTATGGCTCAACCAAAAATCAGCAAACAGTTAAGACCTACCATTAGTCCTGAGCTACTCCAAAATCGATTAAAGGGCTACGTGAAAGGTTTATTGAGTGAAGAGTTACTTTCTCATGCCGAGGTTGTTCGTCTTTCGAAGAAAATTAAGGTAGGTCTCGCATTGGAGGAGCATAAAACCAGGTCAGGACATGTTTCTTGTTCAGTTTCTCATGGTTTACTTCAGCTCTAATGTACCTATACAATTTGGTAATAGATAGTACTATTCCTGCTTTGTTTTTATCCTAGCTTACCTGATGTGAGAGAGAAAAATATAATGTGTTTATGTAGTTCTGTTACTCTATTGATAAAACACAGTTTATGTAGTTCTGTTACTCAATTGATAAAACACAGTTCTAGTAATGGTGTCATGAACTTTACACTTGCTCTCAGACTGAAGGAAAGGCTAGGATGTGAGCCCTCTGAAGACCAACTAGCAATATCACTTAAGATTTCTCGTGCCGAATTACGATCAAGAATGATGGAATGTTCCTTGGCAAGAGAGAAGCTAGCGATGAGCAATGTTCGTTTGGTAATGTCTATTGCACAAAGATATGATAACATGGGAGCTGAAATGGCTGACTTAGTTCAGGTGAAAAGTTTGTGACAACACGTACAATTAACTCTACACCCTATTAGTAGCTTCCCTCCAATTGAGGAATTTGCTTGTGTTTAATGTAGGGCGGCTTGATTGGACTTCTCCGTGGGATTGAGAAGTTTGATTCTTCAAAGGGGTTTAAAATCTCAACCTATGTATATTGGTGGATACGGCAGGTGAGGTTACAAATTCTTAGGAAAAAATAGATGGATACCACATTACCAACCAAAACCCAAACCATCAAATATCATTCATAGTTTTGTAACTGTTTTCTTATTTTGAAAAGTTGAAAGAGAGATTTTCCTATAAAAGAAAATGAAATTCAAATTTGGTGGAGGTAAAATGGAATAAGAGATGTTTTTGCCTAGAATAAAAGGAGAGATGAAAGGAGTGGACGAGAGCCTTTTGAGAGGAAAAATGAATCTTTGAGCTTCAATGATTCATGTAAGAATCTTTAACTTGGTGCAAGTGCAAGCATTGATAGTTCAATGTCTTCATCCATACACAGGGTGTTTCAAGAGCATTAGTTGAGAATTCAAGAACGCTGAGATTGCCAACACATTTGCACGAAAGATTAGGATTGATTCGCAACGCCAAAGTTAAACTGCAAGAGAAAGGAATCACTCCATCACTTGATGTAAGTGAAATATTGTTGGCATTCAAAGGCAAATTAAATTGCAAGCTAAACTAATATAAACTTTTTGAACTTTTTGGAATTGCTCCTAACACTATTAATCTCAGAGGATTGCAGAATCCCTCAACATGTCCAAAAAGAAAGTCAAGAATGCCACTGAGGTATTAAAAATTTCCAACAAACAATCCACTTTGCTCCTTCATGTTGAGTATCTGCTTTTCATTTTCCTTATCAAACCAACAACTTATCTCTTTCAGGCAATCAGCAAGGTGTTTTCACTCGACCGAGAAGCATTCCCTTCATTAAATGGTCTTCCTGGCGAAACCCATCACAGTGTAAGCCTTGAATACGAACTCTGTTTCTGCAAACATAACAAGATTAGAGCTTTGTTCTCGGTTCTTGCCACTCCTTGAGTTTTTTTCATTATCGTTTTGTTTTCACAGTATATCGCAGATAATTGCCTTGAGAACAACCCATGGCATGGAACAGACACATGGATTCTGAAGGTAAAATGATGATAGATAGACCACCAAAAAAATAAATAGACTTAAGGGAGTGAAAAACTACACCATTTTCATCAATATAAGATGAGTGGACAGTTAGTTTGCTTATCTAGATGAATAATTTACCATAATTTACCAAAATTTACTCAAAAATATTGGCAGGCTGAGGTTAACAAACTCATAAATATGACACTCGGGGACCGAGAAAGAGAGATCATACGCCTTTACCATGGTCTGGATAATGAATGTCTTACATGGGAGGAAATAAGCAAACGGTAAGCCAAAGGAACTTATCTCAGCAAAATGCTAATTTCATTTAAGTTAGCTGACAAAATGCACTTTTTGCTCCGAGTTTTTCAGCATAGGATTGTCCAGAGAAAGAGTAAGGCAAGTTGGATTGGTGGCATTGGAGAAACTAAAGAAGGCAGCCAAGACAAGGAAGATGGAAGCCATGTTGATTAAACATTAA

mRNA sequence

AAAATAATGAGGAAAAAAAAGTGTAATTTACCCAAAAAGTTTTGAGACCACACAAAGGTGGGCCCAATATCTATTCCAACCAATAGCATCTCAGCTCCCCATATCTCCAATTCTCAAACATTTTCCTCTCAATTTTTTCCCATTATCTTTCATTTTTCTCCAACATTCTTGCATTACCATTTCTTTCTATTTCTTTCCATGAATTTTTTCTAATTCAACCCCACCAGAAATTTTGCATCAAATTCTCAAAAATATCCTTGATATTCATTCTATCAATCCAATAACAACAACAACTAACCATTCTGCCTTCTTCTTCCTTTGGATTCACCGTCCTCTCTCTCTCTCTCTCTCTAGAGTTTTGGAGTGAAAGACTCCACGGTCTTCCTCCCATTTCTCCTTTCAGGGCTGTTTGTGGTGACAATTTGAAGTCATTGATCCACTGTTGCTGGCGAAGAAAATAGAGTTTGAAGTTTGATTTGGTGTAACTGATTTTGATGATAAGAGTTTTGTGCACCAGAAGAAGAGAAGCCATATGATGGCAACAACTGCAATAATTGGGCTTGGTGCGGCTAAGAGGCTGTTGAATTCTTCATCCTATTATTCTGATTTCACAGAAAAGATTCTGTATGCTAATGACTATAGGTTGGGACAAACTCAAGTTTCCCCTACAAAGAGTGTGGTAATAGCAAAAAGTTCAGCCAACTTTTCTCCAAGCTATCCATTGTCGAATCGGCACTCTCAGCAATGCATCAAAGCTGTGAAGGAACATGTAGAAACTCCATCTTCTCCGACTGCAGAGCCATGGCTTCCTAACACCACAATCTGGGAAGATGAAGAAACTGATCTGAAATGTACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCCATGCTGGAGAAGCAATGGAATCTATCTTTTGAACAAACTGTGTCGACGGATATGCCTAGAGAAAAAACGCTGAAGAAAGTACCTGTCACTTGTTCCGGTGTGTCTGCACGGCAAAGGAGAATGAGTTCTAAGAGGAAAATACAGAGTAAACATGTTTTTATGGCTCAACCAAAAATCAGCAAACAGTTAAGACCTACCATTAGTCCTGAGCTACTCCAAAATCGATTAAAGGGCTACGTGAAAGGTTTATTGAGTGAAGAGTTACTTTCTCATGCCGAGGTTGTTCGTCTTTCGAAGAAAATTAAGGTAGGTCTCGCATTGGAGGAGCATAAAACCAGACTGAAGGAAAGGCTAGGATGTGAGCCCTCTGAAGACCAACTAGCAATATCACTTAAGATTTCTCGTGCCGAATTACGATCAAGAATGATGGAATGTTCCTTGGCAAGAGAGAAGCTAGCGATGAGCAATGTTCGTTTGGTAATGTCTATTGCACAAAGATATGATAACATGGGAGCTGAAATGGCTGACTTAGTTCAGGGCGGCTTGATTGGACTTCTCCGTGGGATTGAGAAGTTTGATTCTTCAAAGGGGTTTAAAATCTCAACCTATGTATATTGGTGGATACGGCAGGGTGTTTCAAGAGCATTAGTTGAGAATTCAAGAACGCTGAGATTGCCAACACATTTGCACGAAAGATTAGGATTGATTCGCAACGCCAAAGTTAAACTGCAAGAGAAAGGAATCACTCCATCACTTGATAGGATTGCAGAATCCCTCAACATGTCCAAAAAGAAAGTCAAGAATGCCACTGAGGCAATCAGCAAGGTGTTTTCACTCGACCGAGAAGCATTCCCTTCATTAAATGGTCTTCCTGGCGAAACCCATCACAGTTATATCGCAGATAATTGCCTTGAGAACAACCCATGGCATGGAACAGACACATGGATTCTGAAGGCTGAGGTTAACAAACTCATAAATATGACACTCGGGGACCGAGAAAGAGAGATCATACGCCTTTACCATGGTCTGGATAATGAATGTCTTACATGGGAGGAAATAAGCAAACGCATAGGATTGTCCAGAGAAAGAGTAAGGCAAGTTGGATTGGTGGCATTGGAGAAACTAAAGAAGGCAGCCAAGACAAGGAAGATGGAAGCCATGTTGATTAAACATTAA

Coding sequence (CDS)

ATGATGGCAACAACTGCAATAATTGGGCTTGGTGCGGCTAAGAGGCTGTTGAATTCTTCATCCTATTATTCTGATTTCACAGAAAAGATTCTGTATGCTAATGACTATAGGTTGGGACAAACTCAAGTTTCCCCTACAAAGAGTGTGGTAATAGCAAAAAGTTCAGCCAACTTTTCTCCAAGCTATCCATTGTCGAATCGGCACTCTCAGCAATGCATCAAAGCTGTGAAGGAACATGTAGAAACTCCATCTTCTCCGACTGCAGAGCCATGGCTTCCTAACACCACAATCTGGGAAGATGAAGAAACTGATCTGAAATGTACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCCATGCTGGAGAAGCAATGGAATCTATCTTTTGAACAAACTGTGTCGACGGATATGCCTAGAGAAAAAACGCTGAAGAAAGTACCTGTCACTTGTTCCGGTGTGTCTGCACGGCAAAGGAGAATGAGTTCTAAGAGGAAAATACAGAGTAAACATGTTTTTATGGCTCAACCAAAAATCAGCAAACAGTTAAGACCTACCATTAGTCCTGAGCTACTCCAAAATCGATTAAAGGGCTACGTGAAAGGTTTATTGAGTGAAGAGTTACTTTCTCATGCCGAGGTTGTTCGTCTTTCGAAGAAAATTAAGGTAGGTCTCGCATTGGAGGAGCATAAAACCAGACTGAAGGAAAGGCTAGGATGTGAGCCCTCTGAAGACCAACTAGCAATATCACTTAAGATTTCTCGTGCCGAATTACGATCAAGAATGATGGAATGTTCCTTGGCAAGAGAGAAGCTAGCGATGAGCAATGTTCGTTTGGTAATGTCTATTGCACAAAGATATGATAACATGGGAGCTGAAATGGCTGACTTAGTTCAGGGCGGCTTGATTGGACTTCTCCGTGGGATTGAGAAGTTTGATTCTTCAAAGGGGTTTAAAATCTCAACCTATGTATATTGGTGGATACGGCAGGGTGTTTCAAGAGCATTAGTTGAGAATTCAAGAACGCTGAGATTGCCAACACATTTGCACGAAAGATTAGGATTGATTCGCAACGCCAAAGTTAAACTGCAAGAGAAAGGAATCACTCCATCACTTGATAGGATTGCAGAATCCCTCAACATGTCCAAAAAGAAAGTCAAGAATGCCACTGAGGCAATCAGCAAGGTGTTTTCACTCGACCGAGAAGCATTCCCTTCATTAAATGGTCTTCCTGGCGAAACCCATCACAGTTATATCGCAGATAATTGCCTTGAGAACAACCCATGGCATGGAACAGACACATGGATTCTGAAGGCTGAGGTTAACAAACTCATAAATATGACACTCGGGGACCGAGAAAGAGAGATCATACGCCTTTACCATGGTCTGGATAATGAATGTCTTACATGGGAGGAAATAAGCAAACGCATAGGATTGTCCAGAGAAAGAGTAAGGCAAGTTGGATTGGTGGCATTGGAGAAACTAAAGAAGGCAGCCAAGACAAGGAAGATGGAAGCCATGTTGATTAAACATTAA

Protein sequence

MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSPSYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSMLEKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEPSEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKKAAKTRKMEAMLIKH

Homology

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BLAST of MELO3C024760 vs. NCBI nr
Match: XP_016902935.1 (PREDICTED: RNA polymerase sigma factor sigA [Cucumis melo] >KAA0066336.1 RNA polymerase sigma factor sigA [Cucumis melo var. makuwa] >TYK00943.1 RNA polymerase sigma factor sigA [Cucumis melo var. makuwa])

HSP 1 Score: 983.8 bits (2542), Expect = 5.6e-283
Identity = 509/509 (100.00%), Postives = 509/509 (100.00%), Query Frame = 0


Query: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60
           MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120
           SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML
Sbjct: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240
           LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
           CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 510
           RVRQVGLVALEKLKKAAKTRKMEAMLIKH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of MELO3C024760 vs. NCBI nr
Match: XP_038902049.1 (RNA polymerase sigma factor sigA [Benincasa hispida])

HSP 1 Score: 943.7 bits (2438), Expect = 6.4e-271
Identity = 494/510 (96.86%), Postives = 499/510 (97.84%), Query Frame = 0


Query: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYA-NDYRLGQTQVSPTKSVVIAKSSANFS 60
           MMAT AIIGLGAAKRLLNSSSYYSDFTEKILY  ND+RLGQTQVSPTKSVVIAKSSANFS
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYVNNDHRLGQTQVSPTKSVVIAKSSANFS 60

Query: 61  PSYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSM 120
           PSYP SNRHS QCIKAVKEHV+TPSSPTAEPWL NTTIWEDEE DLKCTVEALLLLQKSM
Sbjct: 61  PSYPSSNRHS-QCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEEIDLKCTVEALLLLQKSM 120

Query: 121 LEKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISK 180
           LEKQWNLSFEQTVSTD PR KT KKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISK
Sbjct: 121 LEKQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISK 180

Query: 181 QLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCE 240
           QLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEE KTRLKERLGCE
Sbjct: 181 QLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE 240

Query: 241 PSEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 300
           PSEDQLAISLKISRAELRSR+MECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGG
Sbjct: 241 PSEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 300

Query: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV 360
           LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV
Sbjct: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV 360

Query: 361 KLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420
           +LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD
Sbjct: 361 RLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420

Query: 421 NCLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 480
           NCLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR
Sbjct: 421 NCLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 480

Query: 481 ERVRQVGLVALEKLKKAAKTRKMEAMLIKH 510
           ERVRQVGLVALEKLKKAAKTRKMEAML+KH
Sbjct: 481 ERVRQVGLVALEKLKKAAKTRKMEAMLLKH 509

[Close]

BLAST of MELO3C024760 vs. NCBI nr
Match: XP_004151855.1 (RNA polymerase sigma factor sigA [Cucumis sativus] >KGN63339.1 hypothetical protein Csa_022342 [Cucumis sativus])

HSP 1 Score: 932.6 bits (2409), Expect = 1.5e-267
Identity = 487/509 (95.68%), Postives = 495/509 (97.25%), Query Frame = 0


Query: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60
           MMAT AIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVS +KSVVIAKSSANFSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60

Query: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120
            YP SNRHSQQCIKAVKEHVETPSSP AEPW  NTT WEDEET+LK TVEALLLLQKSML
Sbjct: 61  RYPSSNRHSQQCIKAVKEHVETPSSPIAEPW-HNTTSWEDEETELKYTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQW+LSFEQTVSTD P+EKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWSLSFEQTVSTDTPKEKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240
           LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGL LEE KTRLK+RLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQRLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSRMME SLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKV+NATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVQNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
           CLENNPWHGTDTWILK EVN+LINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 510
           RVRQVGLVALEKLKKAAKTRKMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 508

[Close]

BLAST of MELO3C024760 vs. NCBI nr
Match: XP_023533104.1 (RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533105.1 RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533106.1 RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 914.1 bits (2361), Expect = 5.5e-262
Identity = 475/509 (93.32%), Postives = 492/509 (96.66%), Query Frame = 0


Query: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60
           MMAT AIIGLGAAKRLLNSSSYYSDFTEK+LY ND+RLGQ QVS TKSVVIAK SA+FSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSP 60

Query: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120
           SYP SNRH  QCIKAVKEHV+TPSSPTAEPWL NTTIWEDEETDLKCTVEALLLLQKSML
Sbjct: 61  SYPPSNRH-VQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQWNLSFEQTVSTD+PR KT KKVPVTCSGVSARQRRMSSKRKIQSKHVF+AQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFIAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240
           L+P+ISPELLQNRL+GYVKGL+SEE+L H+EVVRLSKKIKVGLALEEHKTRLKERL CEP
Sbjct: 181 LKPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SE+QLAISL+ISRAELRSR+MECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LENNPWHGTDTWILK EVNKLINMTL DREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 RLENNPWHGTDTWILKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 510
           RVRQVGLVALEKLKKAAK RKMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of MELO3C024760 vs. NCBI nr
Match: KAG6605170.1 (RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035161.1 RNA polymerase sigma factor sigA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 912.5 bits (2357), Expect = 1.6e-261
Identity = 475/509 (93.32%), Postives = 490/509 (96.27%), Query Frame = 0


Query: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60
           MMAT AIIGLGAAKRLLNSSSYYSDFTEK+LY ND+RLGQ QVS TKSVVIAK SA+FSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSP 60

Query: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120
           SYP SNRH  QCIKAVKEHV+TPSSPTAEPWL NTTIWEDEETDLKCTVEALLLLQKSML
Sbjct: 61  SYPPSNRH-VQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQWNLSFEQTVSTD PR KT KKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240
           L+P+ISPELLQNRL+GYVKGL+SEE+L H+EVVRLSKKIKVGLALEEHKTRLKERL CEP
Sbjct: 181 LKPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SE+QLAISL+ISRAELRSR+MECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LENNPWHGTDTW LK EVNKLINMTL DREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 RLENNPWHGTDTWSLKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 510
           RVRQVGLVALEKLKKAAK RKMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of MELO3C024760 vs. ExPASy Swiss-Prot
Match: O24629 (RNA polymerase sigma factor sigA OS=Arabidopsis thaliana OX=3702 GN=SIGA PE=1 SV=1)

HSP 1 Score: 672.5 bits (1734), Expect = 3.6e-192
Identity = 358/517 (69.25%), Postives = 427/517 (82.59%), Query Frame = 0


Query: 2   MATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSPS 61
           MAT A+IGL   KRLL+SS Y+SD TEK L  ND+   Q  ++ TKS + AK ++N+SPS
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 62  YPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWE------DEETDLKCTVEALLLL 121
           +P SNRH+Q   KA+KE V+  S  T +PWLPN T  E      D++  +  +VEA+LLL
Sbjct: 61  FPSSNRHTQSA-KALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 120

Query: 122 QKSMLEKQWNLSFEQTVSTDMPREKTL--KKVPV-TCSGVSARQRRMSSKRKIQSKHVFM 181
           QKSMLEK WNLSFE+ VS++ P + T+  KK+PV TCSG+SARQRR+ +K+K    HV  
Sbjct: 121 QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV-- 180

Query: 182 AQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRL 241
                       +S      +++GYVKG++SE++LSH EVVRLSKKIK GL L++HK+RL
Sbjct: 181 ----------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRL 240

Query: 242 KERLGCEPSEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEM 301
           K+RLGCEPS++QLA+SLKISRAEL++ +MEC LAREKLAMSNVRLVMSIAQRYDN+GAEM
Sbjct: 241 KDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEM 300

Query: 302 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG 361
           +DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERLG
Sbjct: 301 SDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG 360

Query: 362 LIRNAKVKLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGET 421
           LIRNAK++LQEKGITPS+DRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGET
Sbjct: 361 LIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGET 420

Query: 422 HHSYIADNCLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEIS 481
           HHSYIAD  LENNPWHG D   LK EV+KLI+ TLG+RE+EIIRLY+GLD ECLTWE+IS
Sbjct: 421 HHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDIS 480

Query: 482 KRIGLSRERVRQVGLVALEKLKKAAKTRKMEAMLIKH 510
           KRIGLSRERVRQVGLVALEKLK AA+ RKMEAM++K+
Sbjct: 481 KRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[Close]

BLAST of MELO3C024760 vs. ExPASy Swiss-Prot
Match: Q0J7T6 (RNA polymerase sigma factor sigA OS=Oryza sativa subsp. japonica OX=39947 GN=SIGA PE=2 SV=2)

HSP 1 Score: 471.5 bits (1212), Expect = 1.2e-131
Identity = 274/531 (51.60%), Postives = 358/531 (67.42%), Query Frame = 0


Query: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60
           M AT A+IGL A  RLL++S     F    L  +   LG               + +F+P
Sbjct: 1   MTATPAVIGLSAGNRLLSAS-----FGPTDLMPDKVSLGVGGGGGGGGGGGGGDAMSFAP 60

Query: 61  SYP--------------LSNRHSQQCIKAVKEHVE-----TPSSPTAEPWLPNTTIWEDE 120
             P              LS     Q ++A++ H        P  P   P  P+       
Sbjct: 61  PAPATPKLTAVAAHRLKLSPHGRAQVMRALRHHSSAAAALAPPPPPPPPPTPSPASRAAH 120

Query: 121 ETDLKCTVEALLLLQKSMLEKQWNLSFE-----QTVSTDMPREKTLK-KVPVTCSGVSAR 180
             DL+ ++EA++LLQ+SMLEKQW L F+       +      + T K  V V  S VSAR
Sbjct: 121 AHDLESSLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSAR 180

Query: 181 QRRMSSKRKIQSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRL 240
           QRRMS +R+ ++K         +      +SPEL+Q+R + Y++G +S+ELL+H +VV L
Sbjct: 181 QRRMSGRRRGRTK---------NGAAHFAVSPELIQSRNRIYLRGTVSKELLTHKQVVHL 240

Query: 241 SKKIKVGLALEEHKTRLKERLGCEPSEDQLAISLKISRAELRSRMMECSLAREKLAMSNV 300
           S KIK G+ L++ +++LKE+LG EPS  QLA SLKIS  ELRSRM E  LARE L MSN+
Sbjct: 241 SHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNL 300

Query: 301 RLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV 360
           RLV+SIAQ+YDN+G E+ADL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL 
Sbjct: 301 RLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALA 360

Query: 361 ENSRTLRLPTHLHERLGLIRNAKVKLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVF 420
           ENS+T RLPT+LHERL  IR AK +L+++GI P+++ IA SLN+S+KKV NATEA++KV 
Sbjct: 361 ENSKTFRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVL 420

Query: 421 SLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWILKAEVNKLINMTLGDREREII 480
           SLD++AFPSLNGLPGET HSYI D  + N+PWHG + W LK EVNKL+N TL +RER+II
Sbjct: 421 SLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDII 480

Query: 481 RLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKKAAKTRKMEAML 507
           RLYHG+  +C TWE+IS++ GLSRERVRQVGL+A+EKLK AA+ + +EA+L
Sbjct: 481 RLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALL 517

[Close]

BLAST of MELO3C024760 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.8e-40
Identity = 113/330 (34.24%), Postives = 185/330 (56.06%), Query Frame = 0


Query: 176 KISKQLRPTISPE--LLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLK 235
           K +K  R T S +    ++ ++ Y++ +    LL   E + L++KI   L LE  + RL 
Sbjct: 62  KAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLS 121

Query: 236 ERLGCEPSEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 295
           E+L  +P + + A ++++     R R+     A++K+  SN+RLV+SIA++Y N G    
Sbjct: 122 EKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQ 181

Query: 296 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 355
           DL+Q G +GL+R  EKFD  KG+K STY  WWIRQ ++RA+ + SRT+RLP HL+E +  
Sbjct: 182 DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISR 241

Query: 356 I-RNAKVKLQEKGITPSLDRIAESLNMSKKKV----KNATEAISKVFSLDREAFPSLNGL 415
           I +  K+  QE G  P+ + IA  + M+ +K+    K+A   IS    + +E    L   
Sbjct: 242 IKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDF 301

Query: 416 ---PGETHHSYIADNCLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDN-E 475
               GET    ++ N             +L+ ++ K+++ +L  RER+++RL +GLD+  
Sbjct: 302 IESDGETPEDQVSKN-------------LLREDLEKVLD-SLSPRERDVLRLRYGLDDGR 361

Query: 476 CLTWEEISKRIGLSRERVRQVGLVALEKLK 495
             T EEI +   ++RER+RQ+   AL KL+
Sbjct: 362 MKTLEEIGQIFNVTRERIRQIEAKALRKLR 377

[Close]

BLAST of MELO3C024760 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 6.5e-40
Identity = 114/331 (34.44%), Postives = 183/331 (55.29%), Query Frame = 0


Query: 173 AQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRL 232
           A  K   ++R T +    ++ ++ Y++ +    LL   E + L+++I   LALE  +  L
Sbjct: 74  AAAKAKAKVRKTYT----EDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDEL 133

Query: 233 KERLGCEPSEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEM 292
            E+L   PS+ + A ++     E R R+     A++K+  SN+RLV+SIA++Y N G   
Sbjct: 134 LEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 193

Query: 293 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG 352
            DL+Q G +GL+R  EKFD  KG+K STY  WWIRQ ++RA+ + SRT+RLP HL+E + 
Sbjct: 194 QDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETIS 253

Query: 353 LI-RNAKVKLQEKGITPSLDRIAESLNMSKKKV----KNATEAISKVFSLDREAFPSLNG 412
            I +  K+  QE G  P+ + IA  + M+ +K+    K+A   IS    + +E    L  
Sbjct: 254 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 313

Query: 413 L---PGETHHSYIADNCLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDN- 472
                GET    +A N             +L+ ++  +++ TL  RER+++RL +GLD+ 
Sbjct: 314 FIEADGETPEDEVAKN-------------LLREDLEGVLS-TLSPRERDVLRLRYGLDDG 373

Query: 473 ECLTWEEISKRIGLSRERVRQVGLVALEKLK 495
              T EEI +   ++RER+RQ+   AL KL+
Sbjct: 374 RMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386

[Close]

BLAST of MELO3C024760 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-39
Identity = 114/312 (36.54%), Postives = 176/312 (56.41%), Query Frame = 0


Query: 203 SEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEPSEDQLAISLKISRAELRSRMME 262
           S +LL+  E   LS  I+  L LE  +T L ER G +P+  Q A +  + +  LR R+  
Sbjct: 269 SSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHH 328

Query: 263 CSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 322
            +L ++K+  SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD++KGFK STY 
Sbjct: 329 GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 388

Query: 323 YWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKL-QEKGITPSLDRIAESLNMSK 382
           +WWI+Q V ++L + SR +RLP H+ E    ++ A+ +L  E G  P  + IAE+  +S 
Sbjct: 389 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSM 448

Query: 383 KKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWIL-----K 442
           K++     +     SLD++   + N  P E     IAD      P   T   IL     +
Sbjct: 449 KRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV----IAD------PEAVTSEDILIKEFMR 508

Query: 443 AEVNKLINMTLGDREREIIRLYHGL-DNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 502
            +++K+++ +LG RE+++IR   G+ D    T +EI + +G+SRERVRQ+   A  KLK 
Sbjct: 509 QDLDKVLD-SLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 568

Query: 503 AAKTRKMEAMLI 508
             +   ++  L+
Sbjct: 569 KKRNNHLQQYLV 569

[Close]

BLAST of MELO3C024760 vs. ExPASy TrEMBL
Match: A0A5D3BME8 (RNA polymerase sigma factor sigA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001180 PE=3 SV=1)

HSP 1 Score: 983.8 bits (2542), Expect = 2.7e-283
Identity = 509/509 (100.00%), Postives = 509/509 (100.00%), Query Frame = 0


Query: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60
           MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120
           SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML
Sbjct: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240
           LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
           CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 510
           RVRQVGLVALEKLKKAAKTRKMEAMLIKH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of MELO3C024760 vs. ExPASy TrEMBL
Match: A0A1S4E4N5 (RNA polymerase sigma factor sigA OS=Cucumis melo OX=3656 GN=LOC103501092 PE=3 SV=1)

HSP 1 Score: 983.8 bits (2542), Expect = 2.7e-283
Identity = 509/509 (100.00%), Postives = 509/509 (100.00%), Query Frame = 0


Query: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60
           MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120
           SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML
Sbjct: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240
           LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
           CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 510
           RVRQVGLVALEKLKKAAKTRKMEAMLIKH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of MELO3C024760 vs. ExPASy TrEMBL
Match: A0A0A0LQR2 (RNA_pol_sigma70 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G431090 PE=3 SV=1)

HSP 1 Score: 932.6 bits (2409), Expect = 7.2e-268
Identity = 487/509 (95.68%), Postives = 495/509 (97.25%), Query Frame = 0


Query: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60
           MMAT AIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVS +KSVVIAKSSANFSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60

Query: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120
            YP SNRHSQQCIKAVKEHVETPSSP AEPW  NTT WEDEET+LK TVEALLLLQKSML
Sbjct: 61  RYPSSNRHSQQCIKAVKEHVETPSSPIAEPW-HNTTSWEDEETELKYTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQW+LSFEQTVSTD P+EKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWSLSFEQTVSTDTPKEKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240
           LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGL LEE KTRLK+RLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQRLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSRMME SLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKV+NATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVQNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
           CLENNPWHGTDTWILK EVN+LINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 510
           RVRQVGLVALEKLKKAAKTRKMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 508

[Close]

BLAST of MELO3C024760 vs. ExPASy TrEMBL
Match: A0A6J1KWY7 (RNA polymerase sigma factor sigA-like OS=Cucurbita maxima OX=3661 GN=LOC111499522 PE=3 SV=1)

HSP 1 Score: 908.7 bits (2347), Expect = 1.1e-260
Identity = 473/509 (92.93%), Postives = 488/509 (95.87%), Query Frame = 0


Query: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60
           MMAT AIIGLGAAKRLLNSSSYYSDFTEK+LY ND+RLGQ QVS TK VVIAK SA+FSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKGVVIAKHSADFSP 60

Query: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120
           SY  SNRH  QCIKAVKEHV+TPSSPTAEPWL NTTIWEDEETDLKCTVEALLLLQKSML
Sbjct: 61  SYSPSNRH-VQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQWNLSFEQTVSTD PR KT KKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240
           L+P ISPELLQNRL+GYVKGL+SEE+L H+EVVRLSKKIKVGLALEEHKTRLKERL C+P
Sbjct: 181 LKPNISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCDP 240

Query: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SE+QLAISL+ISRAELRSR+MECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LENNPWHGTDTWILK EVNKLINMTL DREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 RLENNPWHGTDTWILKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 510
           RVRQVGLVALEKLKKAAK RKMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of MELO3C024760 vs. ExPASy TrEMBL
Match: A0A6J1D604 (RNA polymerase sigma factor sigA OS=Momordica charantia OX=3673 GN=LOC111017241 PE=3 SV=1)

HSP 1 Score: 907.5 bits (2344), Expect = 2.5e-260
Identity = 472/509 (92.73%), Postives = 489/509 (96.07%), Query Frame = 0


Query: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60
           MMAT AIIGLGAAKRLLNSSSYYSDF EK+LYAND+RLGQ+QVSPTKSVVIAKSSANFSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKLLYANDHRLGQSQVSPTKSVVIAKSSANFSP 60

Query: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120
           S+P SNRH+ QCIKAVKEHV+TPSSPT EPWL N+T WEDEE DLKCTVEALLLLQKSML
Sbjct: 61  SFPSSNRHT-QCIKAVKEHVDTPSSPTVEPWLQNSTQWEDEEIDLKCTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQWNLSFEQTV TD  R +T KKVPVTCSGVSARQRRMSSKRKIQSK+ FM QPKISKQ
Sbjct: 121 EKQWNLSFEQTVPTDASRGRTQKKVPVTCSGVSARQRRMSSKRKIQSKNCFMVQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240
           LR TISPELLQ RLKGYVKGL+SEELLSHAEVVRLSKKIKVGLALEE KTRLKERLGCEP
Sbjct: 181 LRSTISPELLQTRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISR ELRSR++ECSLA+EKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRTELRSRVIECSLAKEKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+
Sbjct: 301 IGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LEN+PWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 XLENDPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 510
           RVRQVGLVALEKLKKAAKTRKMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 508

[Close]

BLAST of MELO3C024760 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 672.5 bits (1734), Expect = 2.6e-193
Identity = 358/517 (69.25%), Postives = 427/517 (82.59%), Query Frame = 0


Query: 2   MATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSPS 61
           MAT A+IGL   KRLL+SS Y+SD TEK L  ND+   Q  ++ TKS + AK ++N+SPS
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 62  YPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWE------DEETDLKCTVEALLLL 121
           +P SNRH+Q   KA+KE V+  S  T +PWLPN T  E      D++  +  +VEA+LLL
Sbjct: 61  FPSSNRHTQSA-KALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 120

Query: 122 QKSMLEKQWNLSFEQTVSTDMPREKTL--KKVPV-TCSGVSARQRRMSSKRKIQSKHVFM 181
           QKSMLEK WNLSFE+ VS++ P + T+  KK+PV TCSG+SARQRR+ +K+K    HV  
Sbjct: 121 QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV-- 180

Query: 182 AQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRL 241
                       +S      +++GYVKG++SE++LSH EVVRLSKKIK GL L++HK+RL
Sbjct: 181 ----------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRL 240

Query: 242 KERLGCEPSEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEM 301
           K+RLGCEPS++QLA+SLKISRAEL++ +MEC LAREKLAMSNVRLVMSIAQRYDN+GAEM
Sbjct: 241 KDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEM 300

Query: 302 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG 361
           +DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERLG
Sbjct: 301 SDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG 360

Query: 362 LIRNAKVKLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGET 421
           LIRNAK++LQEKGITPS+DRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGET
Sbjct: 361 LIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGET 420

Query: 422 HHSYIADNCLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEIS 481
           HHSYIAD  LENNPWHG D   LK EV+KLI+ TLG+RE+EIIRLY+GLD ECLTWE+IS
Sbjct: 421 HHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDIS 480

Query: 482 KRIGLSRERVRQVGLVALEKLKKAAKTRKMEAMLIKH 510
           KRIGLSRERVRQVGLVALEKLK AA+ RKMEAM++K+
Sbjct: 481 KRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[Close]

BLAST of MELO3C024760 vs. TAIR 10
Match: AT1G64860.2 (sigma factor A )

HSP 1 Score: 624.4 bits (1609), Expect = 8.1e-179
Identity = 330/483 (68.32%), Postives = 395/483 (81.78%), Query Frame = 0


Query: 2   MATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSPS 61
           MAT A+IGL   KRLL+SS Y+SD TEK L  ND+   Q  ++ TKS + AK ++N+SPS
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 62  YPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWE------DEETDLKCTVEALLLL 121
           +P SNRH+Q   KA+KE V+  S  T +PWLPN T  E      D++  +  +VEA+LLL
Sbjct: 61  FPSSNRHTQSA-KALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 120

Query: 122 QKSMLEKQWNLSFEQTVSTDMPREKTL--KKVPV-TCSGVSARQRRMSSKRKIQSKHVFM 181
           QKSMLEK WNLSFE+ VS++ P + T+  KK+PV TCSG+SARQRR+ +K+K    HV  
Sbjct: 121 QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV-- 180

Query: 182 AQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRL 241
                       +S      +++GYVKG++SE++LSH EVVRLSKKIK GL L++HK+RL
Sbjct: 181 ----------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRL 240

Query: 242 KERLGCEPSEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEM 301
           K+RLGCEPS++QLA+SLKISRAEL++ +MEC LAREKLAMSNVRLVMSIAQRYDN+GAEM
Sbjct: 241 KDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEM 300

Query: 302 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG 361
           +DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERLG
Sbjct: 301 SDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG 360

Query: 362 LIRNAKVKLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGET 421
           LIRNAK++LQEKGITPS+DRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGET
Sbjct: 361 LIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGET 420

Query: 422 HHSYIADNCLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEIS 476
           HHSYIAD  LENNPWHG D   LK EV+KLI+ TLG+RE+EIIRLY+GLD ECLTWE+IS
Sbjct: 421 HHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDIS 468

[Close]

BLAST of MELO3C024760 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 165.6 bits (418), Expect = 1.0e-40
Identity = 114/312 (36.54%), Postives = 176/312 (56.41%), Query Frame = 0


Query: 203 SEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEPSEDQLAISLKISRAELRSRMME 262
           S +LL+  E   LS  I+  L LE  +T L ER G +P+  Q A +  + +  LR R+  
Sbjct: 269 SSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHH 328

Query: 263 CSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 322
            +L ++K+  SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD++KGFK STY 
Sbjct: 329 GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 388

Query: 323 YWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKL-QEKGITPSLDRIAESLNMSK 382
           +WWI+Q V ++L + SR +RLP H+ E    ++ A+ +L  E G  P  + IAE+  +S 
Sbjct: 389 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSM 448

Query: 383 KKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWIL-----K 442
           K++     +     SLD++   + N  P E     IAD      P   T   IL     +
Sbjct: 449 KRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV----IAD------PEAVTSEDILIKEFMR 508

Query: 443 AEVNKLINMTLGDREREIIRLYHGL-DNECLTWEEISKRIGLSRERVRQVGLVALEKLKK 502
            +++K+++ +LG RE+++IR   G+ D    T +EI + +G+SRERVRQ+   A  KLK 
Sbjct: 509 QDLDKVLD-SLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKN 568

Query: 503 AAKTRKMEAMLI 508
             +   ++  L+
Sbjct: 569 KKRNNHLQQYLV 569

[Close]

BLAST of MELO3C024760 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 151.4 bits (381), Expect = 2.0e-36
Identity = 102/313 (32.59%), Postives = 173/313 (55.27%), Query Frame = 0


Query: 194 LKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEPSEDQLAISLKISR 253
           L+ ++ G  +++LL+  E   L   I+  L LE+ KT+L+ + GCEP+  + A ++ IS 
Sbjct: 235 LQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISS 294

Query: 254 AELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSS 313
             L+S +     +REKL  +N+RLV+ IA++Y N G    DL+Q G +GL++ +EKF   
Sbjct: 295 PVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQ 354

Query: 314 KGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA-KVKLQEKGITPSLDR 373
            G + +TY YWWIRQ + +++ +NSRT+RLP +++  LG +  A K  +QE    PS + 
Sbjct: 355 SGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEE 414

Query: 374 IAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDT 433
           +A  + +S +K+           S+ +  +   +     T      D+ +E  P      
Sbjct: 415 LAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQD----TTFQEITPDSGIE-TPTMSVGK 474

Query: 434 WILKAEVNKLINMTLGDREREIIRLYHGLD-NECLTWEEISKRIGLSRERVRQVGLVALE 493
            +++  V  L+N+ L  +ER II+L  G+D  +  +  EI +  GLS+ERVRQ+   AL 
Sbjct: 475 QLMRNHVRNLLNV-LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALY 534

Query: 494 KLKKAAKTRKMEA 505
           +LK+   +  + A
Sbjct: 535 RLKQNMNSHGLHA 541

[Close]

BLAST of MELO3C024760 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 143.3 bits (360), Expect = 5.4e-34
Identity = 112/341 (32.84%), Postives = 166/341 (48.68%), Query Frame = 0


Query: 160 SSKRKIQSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKI 219
           S KR+ + +   +   ++  +       E     +   V G      LS  E V+L   +
Sbjct: 76  SEKRRKRRRRRRVGYERLEPEEEENAGVEAEAETISVPVVGASRSGFLSRLEEVQLCLYL 135

Query: 220 KVGLALEEHKTRLKERLGCEPSEDQLAISLKISRAELRSRMMEC----SLAREKLAMSNV 279
           K G  LE   T ++E        + +++ L   R + +    E       AREK+     
Sbjct: 136 KEGAKLENLGTSVEE-------NEMVSVLLASGRGKKKRSANEILCRRKEAREKITRCYR 195

Query: 280 RLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV 339
           RLV+SIA  Y   G  + DL+Q G IGLLRG E+FD  +G+K+STYVYWWI+Q + RA+ 
Sbjct: 196 RLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIA 255

Query: 340 ENSRTLRLPTHLHERLGLIRNAKVKLQEK-GITPSLDRIAESLNMSKKKVKNATEAISKV 399
             SR ++LP  + E    +  A   L  K    PS + IAE LN++   V+ A E     
Sbjct: 256 HKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSP 315

Query: 400 FSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWILKAEVNKLINMTLGDREREI 459
            SLDR A  +     G      I     E  P        +K E+ +L+  +L  RE  +
Sbjct: 316 VSLDRVASQN-----GRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLG-SLTARESRV 375

Query: 460 IRLYHGLDNEC-LTWEEISKRIGLSRERVRQVGLVALEKLK 495
           + LY GL+ E  +++EEI K + LSRERVRQ+  +AL+KL+
Sbjct: 376 LGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLR 403

The following BLAST results are available for this feature:

BLAST of MELO3C024760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902935.1	5.6e-283	100.00	PREDICTED: RNA polymerase sigma factor sigA [Cucumis melo] >KAA0066336.1 RNA pol...	[more]
XP_038902049.1	6.4e-271	96.86	RNA polymerase sigma factor sigA [Benincasa hispida]	[more]
XP_004151855.1	1.5e-267	95.68	RNA polymerase sigma factor sigA [Cucumis sativus] >KGN63339.1 hypothetical prot...	[more]
XP_023533104.1	5.5e-262	93.32	RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533105...	[more]
KAG6605170.1	1.6e-261	93.32	RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of MELO3C024760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24629	3.6e-192	69.25	RNA polymerase sigma factor sigA OS=Arabidopsis thaliana OX=3702 GN=SIGA PE=1 SV...	[more]
Q0J7T6	1.2e-131	51.60	RNA polymerase sigma factor sigA OS=Oryza sativa subsp. japonica OX=39947 GN=SIG...	[more]
P26683	3.8e-40	34.24	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	6.5e-40	34.44	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
O22056	1.4e-39	36.54	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]

BLAST of MELO3C024760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BME8	2.7e-283	100.00	RNA polymerase sigma factor sigA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4E4N5	2.7e-283	100.00	RNA polymerase sigma factor sigA OS=Cucumis melo OX=3656 GN=LOC103501092 PE=3 SV...	[more]
A0A0A0LQR2	7.2e-268	95.68	RNA_pol_sigma70 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G43...	[more]
A0A6J1KWY7	1.1e-260	92.93	RNA polymerase sigma factor sigA-like OS=Cucurbita maxima OX=3661 GN=LOC11149952...	[more]
A0A6J1D604	2.5e-260	92.73	RNA polymerase sigma factor sigA OS=Momordica charantia OX=3673 GN=LOC111017241 ...	[more]

BLAST of MELO3C024760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64860.1	2.6e-193	69.25	sigma factor A	[more]
AT1G64860.2	8.1e-179	68.32	sigma factor A	[more]
AT1G08540.1	1.0e-40	36.54	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	2.0e-36	32.59	RNApolymerase sigma-subunit F	[more]
AT5G13730.1	5.4e-34	32.84	sigma factor 4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 318..326 score: 64.52 coord: 294..307 score: 49.68 coord: 447..459 score: 37.22 coord: 467..482 score: 48.75 coord: 482..493 score: 46.67
IPR000943	RNA polymerase sigma-70	PROSITE	PS00715	SIGMA70_1	coord: 294..307
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 266..496 e-value: 7.6E-26 score: 88.7
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 98..340 e-value: 9.5E-33 score: 116.1
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 2..509
None	No IPR available	PANTHER	PTHR30603:SF14	RNA POLYMERASE SIGMA FACTOR SIGA	coord: 2..509
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 436..494 e-value: 2.02374E-7 score: 45.9434
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 425..503 e-value: 1.3E-20 score: 75.0
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 341..391 e-value: 4.7E-7 score: 31.8
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 446..495 e-value: 1.2E-10 score: 40.7
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 350..420 e-value: 2.9E-11 score: 43.3
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 272..339 e-value: 1.5E-16 score: 59.9
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 423..499
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 342..398
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 193..340

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024760.1	MELO3C024760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity