MELO3C024681.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C024681.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionIntegrase, catalytic core
Locationchr02: 18979341 .. 18979796 (+)
RNA-Seq ExpressionMELO3C024681.jh1
SyntenyMELO3C024681.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACCAACAAATCTTTCTCAACATCAATCAAGAAAAATCCCCTACGTTTCAAAGCCTTCCCAAAATTCTTCAGAAAAGGTTGCACGTCCTTCCGCAAAGCTTGGACAGGCTTGGCAAATTCAAATCTCTTGGAAGAAAGCTGCGTGAAGATTCCTACTTCGGATTCACTTGTTTGGTCAGCTAGCTCCTCCCCTTCCTTTTCAAACGTTCAATTTCATCATTCTCCCTTCGAAAGCCCAAGCTCAGATTGTGACTTTGTGCGAGGTATTCCATGTCCATCCTCAACAAATTCAAGGGTAGTAGAAGAAGAGTCCGAGGATGAAGACTCAGTGTTCAGTCCCAATAGTGAAGAATTAATACTAGAAGAAGAGCTTTGTATAGAGGAAGAAGAATTACAAAGTGGAGAGGCAGAGAACATAGATTCTTTTGGAGCTGAATTTGCTTCTTCTTAG

mRNA sequence

ATGCCAACCAACAAATCTTTCTCAACATCAATCAAGAAAAATCCCCTACGTTTCAAAGCCTTCCCAAAATTCTTCAGAAAAGGTTGCACGTCCTTCCGCAAAGCTTGGACAGGCTTGGCAAATTCAAATCTCTTGGAAGAAAGCTGCGTGAAGATTCCTACTTCGGATTCACTTGTTTGGTCAGCTAGCTCCTCCCCTTCCTTTTCAAACGTTCAATTTCATCATTCTCCCTTCGAAAGCCCAAGCTCAGATTGTGACTTTGTGCGAGGTATTCCATGTCCATCCTCAACAAATTCAAGGGTAGTAGAAGAAGAGTCCGAGGATGAAGACTCAGTGTTCAGTCCCAATAGTGAAGAATTAATACTAGAAGAAGAGCTTTGTATAGAGGAAGAAGAATTACAAAGTGGAGAGGCAGAGAACATAGATTCTTTTGGAGCTGAATTTGCTTCTTCTTAG

Coding sequence (CDS)

ATGCCAACCAACAAATCTTTCTCAACATCAATCAAGAAAAATCCCCTACGTTTCAAAGCCTTCCCAAAATTCTTCAGAAAAGGTTGCACGTCCTTCCGCAAAGCTTGGACAGGCTTGGCAAATTCAAATCTCTTGGAAGAAAGCTGCGTGAAGATTCCTACTTCGGATTCACTTGTTTGGTCAGCTAGCTCCTCCCCTTCCTTTTCAAACGTTCAATTTCATCATTCTCCCTTCGAAAGCCCAAGCTCAGATTGTGACTTTGTGCGAGGTATTCCATGTCCATCCTCAACAAATTCAAGGGTAGTAGAAGAAGAGTCCGAGGATGAAGACTCAGTGTTCAGTCCCAATAGTGAAGAATTAATACTAGAAGAAGAGCTTTGTATAGAGGAAGAAGAATTACAAAGTGGAGAGGCAGAGAACATAGATTCTTTTGGAGCTGAATTTGCTTCTTCTTAG

Protein sequence

MPTNKSFSTSIKKNPLRFKAFPKFFRKGCTSFRKAWTGLANSNLLEESCVKIPTSDSLVWSASSSPSFSNVQFHHSPFESPSSDCDFVRGIPCPSSTNSRVVEEESEDEDSVFSPNSEELILEEELCIEEEELQSGEAENIDSFGAEFASS
Homology
[Close]
BLAST of MELO3C024681.jh1 vs. NCBI nr
Match: KAA0051398.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 8.69e-20
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = 0 

Query: 57  SLVWSASSSPSFSNVQFHHSPFESPSSDCDFVRGIPCPSSTNSRVVEEESEDEDSVFSPN 116
           S V SASSSPS SNV  H SPF+ P  +CDF RG+P  SST S  V+E SEDEDSV S +
Sbjct: 431 SFVHSASSSPSSSNV--HFSPFKIPGLNCDFERGVP--SSTISSAVDEGSEDEDSVISVS 490

Query: 117 SEELILEEELCIEEEELQSGEAENIDSFGAEFASS 151
           SEELI EE+LC EE E  SGEA++IDSFG EFA+S
Sbjct: 491 SEELIPEEDLCTEETETPSGEADDIDSFGPEFANS 521

[Close]
BLAST of MELO3C024681.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U808 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001400 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.21e-20
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = 0 

Query: 57  SLVWSASSSPSFSNVQFHHSPFESPSSDCDFVRGIPCPSSTNSRVVEEESEDEDSVFSPN 116
           S V SASSSPS SNV  H SPF+ P  +CDF RG+P  SST S  V+E SEDEDSV S +
Sbjct: 431 SFVHSASSSPSSSNV--HFSPFKIPGLNCDFERGVP--SSTISSAVDEGSEDEDSVISVS 490

Query: 117 SEELILEEELCIEEEELQSGEAENIDSFGAEFASS 151
           SEELI EE+LC EE E  SGEA++IDSFG EFA+S
Sbjct: 491 SEELIPEEDLCTEETETPSGEADDIDSFGPEFANS 521

[Close]
BLAST of MELO3C024681.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TTX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00450 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 7.33e-04
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 3  TNKSFS-TSIKKNPLRFKAFPKFFRKGCTSFRKAWTGLANSNLLEESCVKIPT 54
          TN++F  T+I K+  +FK+  +F+ KG +SF+ AW  L NS+LLEES VKI T
Sbjct: 2  TNQNFPCTNIGKDLKKFKSSLRFYIKGRSSFQNAWAALMNSDLLEESGVKIQT 54

The following BLAST results are available for this feature:
BLAST of MELO3C024681.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051398.18.69e-2065.26Integrase, catalytic core [Cucumis melo var. makuwa][more]
BLAST of MELO3C024681.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C024681.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U8084.21e-2065.26Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A5A7TTX57.33e-0450.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C024681.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024681.jh1.t1MELO3C024681.jh1.t1mRNA